Rh1CG277400

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001398
Physical Location & Seq
Reverse (-)
54669568 .. 54672437
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG277400.1

Sequence Viewer

Length: 1356 bp
ATGGCGACTGCTCAAGCGGCCGCCGTCCAAGTGGCTCGGCTGACCAAGCCATCTAACCATGCCAGAGAGCAACTTCAGTTTGCAGCCATTGTCATTCAGACCGCTTTTAGAGGTTACTTGGCAAGGAGGGCGCTTCGTGCGCTTAAAGGGCTTGTGAAGCTGCAAGCTTTGGTGAGAGGACACAATGTGAGGAAGCAAGCGAAGATGACTCTCAGGTGTATGCAAGCTCTTGTTCGAGTTCAAGCTCGGGTTCTTGATCAGAGAACTAGGCTTTCCCATGAAGGTAGTAGAAAATCGGCCTTTAGCGACACTAATAGCAATAGCGCTTGGGAATCGCGGTATCTTCAAGACATTTCAGACCGAAAATCCATTCAGTCTAGAGAGGGAAGTAGTATAGCAGATGATTGGGATGAAAGGCCTCACACTATTGAGGAAGTAAAAGCAATGTTGCAACATAGAAAAGAAGCTGCAATGAAGCGTGAGAAAGCTTTATCCCACGCCTTTTCTCAACAGATATGGAGAAATGGGAGGAGCCCATCAATGGGGAATGAGGAAGAGCTTGAAGAGAAACCCAAATGGTTAGACAGATGGATGGCCCCAAAGCCATGGGAGAGCAGCAGAGGAAGAGCTTCTACTGACCACAAAGACCCCATCAAAACAGTTGAAATCGACACCTCGCAGCCTTATTCAAGTTTATCATCCAATTTCCGAAGATCGAATGCAAGCCAATACCACCAACAAAACCAACAGCAAAGACCTAGTTCACCACTCCATAGAGATAGATCCCACCAAAACCAACACTTCCACCACTCCCCCATCACACCCTCGCCATCAAAGAGCCGCCCTCCTCTCCAAGTGCGGTCTGCGAGCCCTCGTTGCGTTAGAGAAGACCGAAGTTCCAATGCGTCTCAAACCCCTAGCCTGAGGTCTAATTATTACTACAATGGTGGTGTTGTGCACCAGCATAGTAGGGGCAGCACTAGCACTAGTGGCGGCAATGTCGGTGCTACATTGCCTAATTACATGGCGGCAACTGAATCTGCCAAGGCTCGAATTCGCTCCCAAAGTGCACCGAGGCAAAGGCCTTCGACACCTGACAGGGAGCGAGGAGGAGTTGGATCGGTGAAGAAAAGACTTTCGTTTCCAGCTCCCGATCCTTATGGGGTTGTTGGAATGGGGGTTTATGCAGGAGGAGGTTATGGGCATAGCTTGAGGAGTCCGAGCTTTAAGAGTGTGGTGAGTGGATCACACTTTGGGTTGGAGCAACAATCTAACTATTCTTCATGTTGTACTGAGAGTCATGGTGGTGAGGCCTCTCCTTCTTCAACGAGTGACCTTAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

451

Amino Acids

50.39

Weight (kDa)

10.48

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 290 - 406 1.4e-30 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 337
AciI CCGC 8 cut(s) 17, 21, 102, 337, 841, 859, 993, 1028
AclWI GGATC 4 cut(s) 777, 1126, 1148, 1252
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 1053
AcuI CTGAAG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 1291
AfeI AGCGCT 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 541, 542
AgsI TTSAA 6 cut(s) 242, 347, 563, 665, 690, 1326
AhlI ACTAGT 1 cut(s) 986
Alw21I GWGCWC 2 cut(s) 960, 1072
Alw26I GTCTC 1 cut(s) 912
Alw44I GTGCAC 2 cut(s) 956, 1068
AlwI GGATC 4 cut(s) 777, 1126, 1148, 1252
Ama87I CYCGRG 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 325
AoxI GGCC 6 cut(s) 18, 297, 416, 594, 1082, 1311
ApaLI GTGCAC 2 cut(s) 956, 1068
ApeKI GCWGC 6 cut(s) 83, 160, 467, 615, 679, 975
ApoI RAATTY 1 cut(s) 1053
Asp700I GAANNNNTTC 1 cut(s) 628
AspLEI GCGC 3 cut(s) 133, 142, 326
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 5 cut(s) 184, 756, 1135, 1249, 1319
AvaI CYCGRG 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 923
BaeGI GKGCMC 2 cut(s) 960, 1072
BanII GRGCYC 2 cut(s) 536, 872
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 960, 1072
BbvI GCAGC 6 cut(s) 95, 147, 454, 627, 691, 987
BccI CCATC 7 cut(s) 58, 544, 582, 586, 659, 824, 838
BceAI ACGGC 1 cut(s) 8
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 912
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 6 cut(s) 267, 378, 759, 918, 981, 987
BfoI RGCGCY 2 cut(s) 134, 327
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 2 cut(s) 533, 597
BpiI GAAGAC 1 cut(s) 894
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpuEI CTTGAG 1 cut(s) 1231
BsaJI CCNNGG 3 cut(s) 605, 1044, 1073
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 542
Bse21I CCTNAGG 1 cut(s) 923
Bse3DI GCAATG 4 cut(s) 450, 477, 1003, 1010
BseDI CCNNGG 3 cut(s) 605, 1044, 1073
BseGI GGATG 3 cut(s) 415, 597, 698
BseLI CCNNNNNNNGG 2 cut(s) 541, 542
BseMI GCAATG 4 cut(s) 450, 477, 1003, 1010
BseMII CTCAG 3 cut(s) 226, 914, 1284
BseRI GAGGAG 6 cut(s) 544, 837, 1122, 1125, 1206, 1228
BseSI GKGCMC 2 cut(s) 960, 1072
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 6 cut(s) 95, 147, 454, 627, 691, 987
Bsh1236I CGCG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 6 cut(s) 20, 299, 418, 596, 1084, 1313
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 960, 1072
BsiHKCI CYCGRG 1 cut(s) 246
BslI CCNNNNNNNGG 2 cut(s) 541, 542
BsmAI GTCTC 1 cut(s) 912
BsmBI CGTCTC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 6 cut(s) 20, 299, 418, 596, 1084, 1313
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 4 cut(s) 536, 872, 960, 1072
Bsp143I GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
Bsp19I CCATGG 1 cut(s) 605
BspACI CCGC 8 cut(s) 17, 21, 102, 337, 841, 859, 993, 1028
BspANI GGCC 6 cut(s) 20, 299, 418, 596, 1084, 1313
BspCNI CTCAG 3 cut(s) 225, 915, 1285
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 533, 597
BspPI GGATC 4 cut(s) 777, 1126, 1148, 1252
BspQI GCTCTTC 2 cut(s) 549, 619
BsrDI GCAATG 4 cut(s) 450, 477, 1003, 1010
BssECI CCNNGG 3 cut(s) 605, 1044, 1073
BssMI GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
BssT1I CCWWGG 2 cut(s) 605, 1044
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 3 cut(s) 549, 558, 619
BstC8I GCNNGC 5 cut(s) 165, 198, 225, 724, 868
BstDEI CTNAG 4 cut(s) 212, 923, 1293, 1337
BstDSI CCRYGG 1 cut(s) 605
BstF5I GGATG 3 cut(s) 415, 597, 698
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 2 cut(s) 134, 327
BstHHI GCGC 3 cut(s) 133, 142, 326
BstKTI GATC 6 cut(s) 259, 716, 785, 1121, 1156, 1247
BstMAI GTCTC 1 cut(s) 912
BstMBI GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
BstMCI CGRYCG 1 cut(s) 21
BstSLI GKGCMC 2 cut(s) 960, 1072
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 6 cut(s) 95, 147, 454, 627, 691, 987
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 606
BstYI RGATCY 1 cut(s) 782
BstZI CGGCCG 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 923
BsuRI GGCC 6 cut(s) 20, 299, 418, 596, 1084, 1313
BtgI CCRYGG 1 cut(s) 605
BtsCI GGATG 3 cut(s) 415, 597, 698
Cac8I GCNNGC 5 cut(s) 165, 198, 225, 724, 868
CciNI GCGGCCGC 1 cut(s) 18
CfoI GCGC 3 cut(s) 133, 142, 326
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 1 cut(s) 894
Csp6I GTAC 1 cut(s) 1290
CviAII CATG 6 cut(s) 59, 278, 606, 1024, 1284, 1301
CviQI GTAC 1 cut(s) 1290
DdeI CTNAG 4 cut(s) 212, 923, 1293, 1337
DpnI GATC 6 cut(s) 258, 715, 784, 1120, 1155, 1246
DpnII GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
DraIII CACNNNGTG 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 549, 558, 619
EarI CTCTTC 3 cut(s) 549, 558, 619
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 605, 1044
Eco147I AGGCCT 3 cut(s) 418, 1084, 1313
Eco24I GRGCYC 2 cut(s) 536, 872
Eco47III AGCGCT 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 923
Eco88I CYCGRG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 1053
EcoT14I CCWWGG 2 cut(s) 605, 1044
EcoT38I GRGCYC 2 cut(s) 536, 872
ErhI CCWWGG 2 cut(s) 605, 1044
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 6 cut(s) 62, 281, 609, 1027, 1287, 1304
FatI CATG 6 cut(s) 58, 277, 605, 1023, 1283, 1300
FbaI TGATCA 1 cut(s) 256
FokI GGATG 3 cut(s) 422, 604, 685
FriOI GRGCYC 2 cut(s) 536, 872
FspBI CTAG 6 cut(s) 267, 378, 759, 918, 981, 987
GlaI GCGC 3 cut(s) 132, 141, 325
HaeII RGCGCY 2 cut(s) 134, 327
HaeIII GGCC 6 cut(s) 20, 299, 418, 596, 1084, 1313
HgaI GACGC 1 cut(s) 894
HhaI GCGC 3 cut(s) 133, 142, 326
Hin1II CATG 6 cut(s) 62, 281, 609, 1027, 1287, 1304
Hin6I GCGC 3 cut(s) 131, 140, 324
HinP1I GCGC 3 cut(s) 131, 140, 324
HindIII AAGCTT 2 cut(s) 165, 486
HinfI GANTC 5 cut(s) 208, 332, 1037, 1216, 1297
HphI GGTGA 5 cut(s) 184, 756, 1135, 1249, 1319
Hpy166II GTNNAC 3 cut(s) 764, 958, 1070
Hpy188I TCNGA 5 cut(s) 99, 261, 358, 710, 1221
Hpy188III TCNNGA 4 cut(s) 254, 347, 378, 1151
Hpy8I GTNNAC 3 cut(s) 764, 958, 1070
HpyAV CCTTC 4 cut(s) 275, 1095, 1329, 1335
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 9 cut(s) 83, 163, 223, 451, 470, 722, 958, 1070, 1187
HpyF3I CTNAG 4 cut(s) 212, 923, 1293, 1337
Hsp92II CATG 6 cut(s) 62, 281, 609, 1027, 1287, 1304
HspAI GCGC 3 cut(s) 131, 140, 324
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
LguI GCTCTTC 2 cut(s) 549, 619
LmnI GCTCC 5 cut(s) 531, 1064, 1102, 1153, 1261
LpnPI CCDG 8 cut(s) 76, 199, 935, 974, 1084, 1107, 1158, 1173
Lsp1109I GCAGC 6 cut(s) 95, 147, 454, 627, 691, 987
MaeI CTAG 6 cut(s) 267, 378, 759, 918, 981, 987
MaeIII GTNAC 2 cut(s) 113, 1331
MalI GATC 6 cut(s) 258, 715, 784, 1120, 1155, 1246
MboI GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 4 cut(s) 536, 872, 960, 1072
MluCI AATT 4 cut(s) 703, 931, 1018, 1053
MlyI GAGTC 3 cut(s) 202, 1225, 1306
MmeI TCCRAC 3 cut(s) 1096, 1150, 1239
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 2 cut(s) 144, 1227
MslI CAYNNNNRTG 1 cut(s) 1305
Mva1269I GAATGC 1 cut(s) 724
MvnI CGCG 1 cut(s) 337
NcoI CCATGG 1 cut(s) 605
NdeII GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
NlaIII CATG 6 cut(s) 62, 281, 609, 1027, 1287, 1304
NlaIV GGNNCC 2 cut(s) 533, 597
NmeAIII GCCGAG 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 1331
NotI GCGGCCGC 1 cut(s) 18
PceI AGGCCT 3 cut(s) 418, 1084, 1313
PciSI GCTCTTC 2 cut(s) 549, 619
PctI GAATGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 2 cut(s) 332, 1037
PleI GAGTC 3 cut(s) 202, 1224, 1305
PpsI GAGTC 3 cut(s) 202, 1224, 1305
PspN4I GGNNCC 2 cut(s) 533, 597
PspPI GGNCC 1 cut(s) 595
PsuI RGATCY 1 cut(s) 782
RsaI GTAC 1 cut(s) 1291
RsaNI GTAC 1 cut(s) 1290
RseI CAYNNNNRTG 1 cut(s) 1305
SapI GCTCTTC 2 cut(s) 549, 619
SaqAI TTAA 2 cut(s) 144, 1227
Sau3AI GATC 6 cut(s) 256, 713, 782, 1118, 1153, 1244
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 3 cut(s) 202, 1225, 1306
SduI GDGCHC 4 cut(s) 536, 872, 960, 1072
SmiMI CAYNNNNRTG 1 cut(s) 1305
SmlI CTYRAG 2 cut(s) 12, 1210
SmoI CTYRAG 2 cut(s) 12, 1210
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 4 cut(s) 703, 931, 1018, 1053
SseBI AGGCCT 3 cut(s) 418, 1084, 1313
SsiI CCGC 8 cut(s) 17, 21, 102, 337, 841, 859, 993, 1028
SspMI CTAG 6 cut(s) 267, 378, 759, 918, 981, 987
StuI AGGCCT 3 cut(s) 418, 1084, 1313
StyI CCWWGG 2 cut(s) 605, 1044
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 5 cut(s) 235, 669, 716, 1051, 1088
TaqII GACCGA 2 cut(s) 375, 906
TasI AATT 4 cut(s) 703, 931, 1018, 1053
TatI WGTACW 1 cut(s) 1289
TauI GCSGC 5 cut(s) 20, 23, 843, 996, 1031
TfiI GAWTC 2 cut(s) 332, 1037
Tru1I TTAA 2 cut(s) 144, 1227
Tru9I TTAA 2 cut(s) 144, 1227
TseFI GTSAC 1 cut(s) 1331
TseI GCWGC 6 cut(s) 83, 160, 467, 615, 679, 975
Tsp45I GTSAC 1 cut(s) 1331
TspDTI ATGAA 4 cut(s) 294, 426, 488, 1272
VneI GTGCAC 2 cut(s) 956, 1068
XapI RAATTY 1 cut(s) 1053
XbaI TCTAGA 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 6 cut(s) 267, 378, 759, 918, 981, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.