Rorug01G0284000

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001398
Physical Location & Seq
Reverse (-)
39766750 .. 39767584
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0284000.1

Sequence Viewer

Length: 705 bp
ATGGACAACGGGAGCTTGGAAGATTGGTTGCATCCATCTAGTGGAACTAGAGAGGTAATAGAAGCACCCAAAAGTTTAAGTCTTATTCAAAGGCTCAACATTGCCATTGATGTTGCCAGTGCATTGGATTATCTTCACAACCATTGTGAAACACCGATTGTTCATTGTGATCTCAAGCCAAGTAATGTTCTCTTGGATGGTGACCTGACTGGACATGTTTCTGACTTTGGGTTGTCAAGGTTTCTCTCAGAACCAACCATGAGTATTTCTGGAAATCAATCAAGCTCCATTGGAATTAGAGGATCGGTTGGTTATGCTGCACCAGAGTATGGTATGGGAAGTGAGGTATCCACATACGGGGATGTCTACAGCTTTGGCATTCTCTTGTTAGAAATATTTACGGGGAAGCGACCCACTAATCACATGTTTAGTGATAGCTTGAATCTTCATAATTATGTGAAGACAACTCTCCCTGAACTGGTTTCAGAGATTTTTGAATCACTTGTTCTTCAAGAAGGCACCACCAATGTCACTGAAGCTCACAGGCAAAGCCGATTGAGTGTGAGAGCACAGAAAATTGAAGAGTGCTTGACTCTGATACTTGGTATAGGAATTGCATGTTCTGCTGAATCCCCCACAAACAGAAAGGATATCAGTGATGTTGCATATGAATTGCAATCCATTAGGCGCAATCTTCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

234

Amino Acids

25.62

Weight (kDa)

5.02

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 146 1.1e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 18 - 154 1.1e-21 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 2 cut(s) 41, 329
AccI GTMKAC 1 cut(s) 366
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 41, 329, 357, 478
AflIII ACRYGT 2 cut(s) 214, 423
AgsI TTSAA 5 cut(s) 89, 442, 497, 512, 581
AluBI AGCT 5 cut(s) 15, 285, 372, 438, 539
AluI AGCT 5 cut(s) 15, 285, 372, 438, 539
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 690
AsuHPI GGTGA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 43, 191
BciVI GTATCC 1 cut(s) 358
BfaI CTAG 3 cut(s) 39, 48, 703
BfmI CTRYAG 1 cut(s) 367
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 520
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 329, 357, 478
Bse1I ACTGG 3 cut(s) 117, 214, 483
Bse3DI GCAATG 1 cut(s) 99
BseGI GGATG 3 cut(s) 31, 202, 367
BseLI CCNNNNNNNGG 4 cut(s) 41, 329, 357, 478
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 3 cut(s) 117, 214, 483
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 571
BslI CCNNNNNNNGG 4 cut(s) 41, 329, 357, 478
BsmI GAATGC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 2 cut(s) 169, 302
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 3 cut(s) 117, 214, 483
BssMI GATC 2 cut(s) 169, 302
Bst6I CTCTTC 1 cut(s) 576
BstAPI GCANNNNNTGC 1 cut(s) 623
BstDEI CTNAG 1 cut(s) 247
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 3 cut(s) 31, 202, 367
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 2 cut(s) 172, 305
BstMBI GATC 2 cut(s) 169, 302
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNSI RCATGY 3 cut(s) 218, 427, 621
BstPI GGTNACC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 467
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuI GTATCC 1 cut(s) 358
BtsCI GGATG 3 cut(s) 31, 202, 367
BtsIMutI CAGTG 3 cut(s) 124, 531, 661
CfoI GCGC 1 cut(s) 690
CviAII CATG 4 cut(s) 215, 259, 424, 618
CviJI RGCY 8 cut(s) 15, 94, 178, 285, 372, 438, 539, 552
CviKI_1 RGCY 8 cut(s) 15, 94, 178, 285, 372, 438, 539, 552
DdeI CTNAG 1 cut(s) 247
DpnI GATC 2 cut(s) 171, 304
DpnII GATC 2 cut(s) 169, 302
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco32I GATATC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoRV GATATC 1 cut(s) 652
FaeI CATG 4 cut(s) 218, 262, 427, 621
FatI CATG 4 cut(s) 214, 258, 423, 617
FauNDI CATATG 1 cut(s) 667
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 3 cut(s) 18, 209, 374
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 3 cut(s) 39, 48, 703
GlaI GCGC 1 cut(s) 689
GluI GCNGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 690
Hin1II CATG 4 cut(s) 218, 262, 427, 621
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HinfI GANTC 4 cut(s) 442, 497, 592, 629
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 223, 250, 487, 597
Hpy188III TCNNGA 2 cut(s) 270, 512
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 509
HpyCH4V TGCA 6 cut(s) 31, 122, 320, 617, 665, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 1 cut(s) 247
Hsp92II CATG 4 cut(s) 218, 262, 427, 621
HspAI GCGC 1 cut(s) 688
Kzo9I GATC 2 cut(s) 169, 302
LmnI GCTCC 2 cut(s) 12, 290
LpnPI CCDG 8 cut(s) 130, 195, 218, 255, 336, 464, 486, 529
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 40
MaeI CTAG 3 cut(s) 39, 48, 703
MaeIII GTNAC 2 cut(s) 200, 529
MalI GATC 2 cut(s) 171, 304
MboI GATC 2 cut(s) 169, 302
MboII GAAGA 7 cut(s) 32, 125, 437, 472, 500, 593, 686
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 5 cut(s) 294, 451, 576, 612, 671
MlyI GAGTC 1 cut(s) 586
MnlI CCTC 3 cut(s) 46, 293, 337
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeI CATATG 1 cut(s) 667
NdeII GATC 2 cut(s) 169, 302
NlaIII CATG 4 cut(s) 218, 262, 427, 621
NlaIV GGNNCC 1 cut(s) 520
NmuCI GTSAC 2 cut(s) 200, 529
NspI RCATGY 3 cut(s) 218, 427, 621
PciI ACATGT 2 cut(s) 214, 423
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 442, 497, 629
PflMI CCANNNNNTGG 2 cut(s) 41, 329
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PscI ACATGT 2 cut(s) 214, 423
PspEI GGTNACC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 169, 302
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 1 cut(s) 571
SetI ASST 9 cut(s) 17, 57, 207, 242, 287, 348, 374, 440, 541
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 5 cut(s) 294, 451, 576, 612, 671
SspI AATATT 1 cut(s) 396
SspMI CTAG 3 cut(s) 39, 48, 703
TasI AATT 5 cut(s) 294, 451, 576, 612, 671
TfiI GAWTC 3 cut(s) 442, 497, 629
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 3 cut(s) 124, 538, 661
TseFI GTSAC 2 cut(s) 200, 529
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 200, 529
TspDTI ATGAA 3 cut(s) 152, 437, 684
TspRI CASTG 3 cut(s) 124, 538, 661
Van91I CCANNNNNTGG 2 cut(s) 41, 329
XceI RCATGY 3 cut(s) 218, 427, 621
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 3 cut(s) 39, 48, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.