Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001398

Physical Location & Seq

Genomic Coordinates Forward (+)

60278557 .. 60279935

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0481500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGAAGGCGGCAAGCAACTATGCGAGGCGGCGAAGAACGGCGACGCCGAGAAGCTCAAAACTGTAATAGACTCCGGAGCCGACGTTTCGTACTTCGACGGCGAAGGCCTCACTCCGCTTATGCACGCAGCCCAGCTTGGCCACGCCGCCGCAGTGAAGGCCCTTCTGGAAGCTGGTGCCCCCTGGAACGCTCTCAACCCTTCCAATCTCTCCGCCGGCGATTTAGCCATGAACGCCGGTCACGAGGAAGCCTACGAGCTCCTCCTCAATGCCGGGATTCAAGCTGAGTTGGTACTGGGAACAATTGCTAGGAGAGAAAATAACAATGGGGAGTGGAATGATGATTACTTGGAGGATAGAGTGAGCTTTAGTGAGGATAAGTTGATGGATGGCGAAAATAAGGCGGTGATGATGGCTTGGGAGAATCCATTAATGGAGGCACATGCGAAAGCTGTGTGCTCAAATGGGGGTCATATACTGAACATTGGATTTGGGATGGGTCTGGTGGACACTGCCATTCAGAAATACTCCCCTGCTTCGCATACTATCGTTGAGGCTCACCCTAATGTTTTCCAGCGTATGCTTGATGACGGTTGGGATAAGAAGGAAAATGTGACTATAATTTGTGGCCGGTGGCAGGATGTTGTGCATGAACTTCCGACTTTTGATGGGATTTTCTTTGATACGTATGGAGAGTATTATGATGACCTGAGAGAGTTTCACCAGCAACTTCCGGTGTTGCTGAAGCCCGGGGGAATCTACTCTTTCTTCAATGGACTTTGTGGAGGTAATGCATTCTTCCATGTAGTTTACTGTCACATAGTTCAGCTAGAGCTTCAGAGTTTGGGTTACTCTACACAGTTCATTCCCTTGCCTGTTAAGGATTGCTTAGGAGAACAAGTTTGGGAGGGTGTCAAACAGAAGTATTGGCAGCTTGATACATATTACCTCCCTGTATGTCAGTCCTTGGAGGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

328

Amino Acids

36.36

Weight (kDa)

4.57

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	8 - 95	2.4e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	28 - 77	4.5e-07	Ankyrin repeats (many copies)
Ank	PF00023	37 - 67	6.8e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01110 AT1G01110 AT4G00820
fragaria_vesca	FvH4_5g10710 FvH4_7g17520 FvH4_7g17520 FvH4_7g17520 FvH4_7g32790
malus_domestica	MD01G1087900.v1.1 MD01G1227500.v1.1 MD06G1121100.v1.1 MD07G1158100.v1.1 MD07G1170800.v1.1 MD07G1297900.v1.1 MD14G1137700.v1.1
prunus_persica	Prupe.2G196500_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.5G131700_v2.0.a1
pyrus_communis	pycom01g11180 pycom07g15460 pycom07g27030 pycom14g11290
rosa_chinensis	RchiOBHm_Chr1g0360961 RchiOBHm_Chr1g0382751 RchiOBHm_Chr7g0187421
rosa_laevigata	RLG00000004782 RLG00000026164 RLG00000027766
rosa_multiflora	Rmu_co8094202.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267450 Rroxscaffold_4G00277940 Rroxscaffold_4G00295660
rosa_rugosa	Rorug01G0283900 Rorug01G0284000 Rorug01G0435500 Rorug06G0481500
rosa_samantha	Rh1AG295200 Rh1AG460700 Rh1BG260000 Rh1BG417500 Rh1CG277400 Rh1CG431100 Rh1DG290000 Rh1DG449700 Rh7AG086000 Rh7BG087500 Rh7CG086900 Rh7DG088500
rosa_wichuraiana	Rw1G026120 Rw1G041090 Rw7G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
AcoI	YGGCCR	2 cut(s)	142, 631
AcuI	CTGAAG	2 cut(s)	767, 824
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	95, 297
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	2 cut(s)	284, 775
AjnI	CCWGG	1 cut(s)	185
Alw21I	GWGCWC	2 cut(s)	264, 464
Ama87I	CYCGRG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	4 cut(s)	109, 142, 162, 631
ApeKI	GCWGC	2 cut(s)	131, 934
AseI	ATTAAT	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	3 cut(s)	277, 753, 754
AsuHPI	GGTGA	3 cut(s)	421, 554, 716
AvaI	CYCGRG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	264, 464
BbvI	GCAGC	2 cut(s)	143, 946
BccI	CCATC	5 cut(s)	382, 386, 409, 493, 665
BceAI	ACGGC	2 cut(s)	58, 118
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	3 cut(s)	277, 753, 754
BfaI	CTAG	2 cut(s)	312, 833
BisI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
BlsI	GCNGC	6 cut(s)	14, 34, 133, 151, 154, 936
Bme1390I	CCNGG	4 cut(s)	187, 277, 753, 754
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	82, 181
BmrFI	CCNGG	4 cut(s)	187, 277, 753, 754
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	892
BpuMI	CCSGG	3 cut(s)	277, 753, 754
BsaAI	YACGTR	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	185, 752, 753, 969
BsaWI	WCCGGW	2 cut(s)	77, 736
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	3 cut(s)	218, 239, 633
Bse1I	ACTGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	4 cut(s)	185, 752, 753, 969
BseGI	GGATG	3 cut(s)	397, 504, 649
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	279, 704
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	143, 946
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	4 cut(s)	111, 144, 164, 633
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	264, 464
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	7 cut(s)	78, 219, 240, 276, 634, 737, 753
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	4 cut(s)	111, 144, 164, 633
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	3 cut(s)	184, 264, 464
Bsp13I	TCCGGA	1 cut(s)	77
BspACI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
BspANI	GGCC	4 cut(s)	111, 144, 164, 633
BspCNI	CTCAG	2 cut(s)	280, 705
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	82, 181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	3 cut(s)	218, 239, 633
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	3 cut(s)	218, 239, 633
BssECI	CCNNGG	4 cut(s)	185, 752, 753, 969
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	969
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	4 cut(s)	67, 596, 818, 864
BstACI	GRCGYC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	690
BstC8I	GCNNGC	3 cut(s)	17, 129, 220
BstDEI	CTNAG	3 cut(s)	288, 713, 892
BstF5I	GGATG	3 cut(s)	397, 504, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 236
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	185, 275, 751, 752
BstSLI	GKGCMC	1 cut(s)	184
BstSNI	TACGTA	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	143, 946
BsuRI	GGCC	4 cut(s)	111, 144, 164, 633
BtsCI	GGATG	3 cut(s)	397, 504, 649
BtsI	GCAGTG	2 cut(s)	162, 513
BtsIMutI	CAGTG	2 cut(s)	162, 513
Cac8I	GCNNGC	3 cut(s)	17, 129, 220
Cfr10I	RCCGGY	3 cut(s)	218, 239, 633
Cfr13I	GGNCC	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	752
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	94, 296
CviAII	CATG	4 cut(s)	232, 446, 653, 806
CviQI	GTAC	2 cut(s)	94, 296
DdeI	CTNAG	3 cut(s)	288, 713, 892
EaeI	YGGCCR	2 cut(s)	142, 631
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	262
Eco105I	TACGTA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	969
Eco147I	AGGCCT	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	767, 824
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	969
EcoT22I	ATGCAT	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	4 cut(s)	235, 449, 656, 809
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FatI	CATG	4 cut(s)	231, 445, 652, 805
Fnu4HI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
FokI	GGATG	3 cut(s)	404, 511, 656
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
FspBI	CTAG	2 cut(s)	312, 833
GluI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	111, 144, 164, 633
HapII	CCGG	7 cut(s)	78, 219, 240, 276, 634, 737, 753
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	235, 449, 656, 809
HinfI	GANTC	5 cut(s)	74, 280, 427, 759, 977
HpaII	CCGG	7 cut(s)	78, 219, 240, 276, 634, 737, 753
HphI	GGTGA	3 cut(s)	421, 554, 716
Hpy166II	GTNNAC	2 cut(s)	511, 814
Hpy188I	TCNGA	4 cut(s)	525, 663, 843, 982
Hpy188III	TCNNGA	3 cut(s)	78, 170, 245
Hpy8I	GTNNAC	2 cut(s)	511, 814
Hpy99I	CGWCG	3 cut(s)	50, 89, 104
HpyAV	CCTTC	5 cut(s)	101, 154, 176, 213, 601
HpyCH4III	ACNGT	4 cut(s)	67, 596, 818, 864
HpyCH4IV	ACGT	2 cut(s)	87, 689
HpyCH4V	TGCA	3 cut(s)	127, 652, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 236
HpyF3I	CTNAG	3 cut(s)	288, 713, 892
HpySE526I	ACGT	2 cut(s)	87, 689
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	235, 449, 656, 809
Kpn2I	TCCGGA	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	80, 267
Lsp1109I	GCAGC	2 cut(s)	143, 946
MaeI	CTAG	2 cut(s)	312, 833
MaeII	ACGT	2 cut(s)	87, 689
MaeIII	GTNAC	4 cut(s)	242, 616, 818, 851
MboII	GAAGA	4 cut(s)	17, 49, 763, 793
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	184, 264, 464
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	306, 624
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	686
Mox20I	TGGCCA	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	799
MreI	CGCCGGCG	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	2 cut(s)	434, 882
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	7 cut(s)	78, 219, 240, 276, 634, 737, 753
MspR9I	CCNGG	4 cut(s)	187, 277, 753, 754
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	161, 236
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	3 cut(s)	277, 753, 754
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	235, 449, 656, 809
NlaIV	GGNNCC	2 cut(s)	82, 181
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	3 cut(s)	242, 616, 818
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 243
PctI	GAATGC	1 cut(s)	797
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	280, 427, 759, 977
PkrI	GCNGC	6 cut(s)	14, 34, 133, 151, 154, 936
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	82, 181
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	95, 297
RsaNI	GTAC	2 cut(s)	94, 296
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	434, 882
SatI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	187, 277, 753, 754
SduI	GDGCHC	3 cut(s)	184, 264, 464
SgrAI	CRCCGGYG	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	567
SnaBI	TACGTA	1 cut(s)	690
Sse9I	AATT	2 cut(s)	306, 624
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
SspMI	CTAG	2 cut(s)	312, 833
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	4 cut(s)	185, 275, 751, 752
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	4 cut(s)	67, 596, 818, 864
TaiI	ACGT	2 cut(s)	90, 692
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	306, 624
TauI	GCSGC	4 cut(s)	15, 35, 152, 155
TfiI	GAWTC	4 cut(s)	280, 427, 759, 977
Tru1I	TTAA	2 cut(s)	434, 882
Tru9I	TTAA	2 cut(s)	434, 882
TscAI	CASTG	2 cut(s)	162, 520
TseFI	GTSAC	3 cut(s)	242, 616, 818
TseI	GCWGC	2 cut(s)	131, 934
Tsp45I	GTSAC	3 cut(s)	242, 616, 818
TspDTI	ATGAA	3 cut(s)	248, 669, 856
TspMI	CCCGGG	1 cut(s)	752
TspRI	CASTG	2 cut(s)	162, 520
VspI	ATTAAT	1 cut(s)	434
XceI	RCATGY	1 cut(s)	449
XmaI	CCCGGG	1 cut(s)	752
XspI	CTAG	2 cut(s)	312, 833
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.