Prupe.2G196500_v2.0.a1

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001398
Physical Location & Seq
Reverse (-)
23378983 .. 23382293
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G196500.1

Sequence Viewer

Length: 1596 bp
ATGGGGAAGAAGGGAGGCACTTCGTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGACGATGAAGATCAAAAGAAAAGAGAGAAGCGAAGGTGGTTCAGGAAACCCACAAATTTAAATCAACAAGAAACAGCTACACAACAAGCTCAAGCGCCAAAGGCCACAGACCATGTATCAGCAGCCAACAGTTCAGCAGCTGCAGAGCAAAAGCATGTGCTGGCTGTGGCTGTGGCCACAGCTGAGGCTGCAATGGCAACTGCCCAAGCAGCAGCCGAAGTGGCTCGGCTAACTAGGCCTTCTAATCATGCTAGAGAGCAGTATTATGCCATTGTTATCCAGACTGCCTTTAGAGGATACTTGGCAAGGAGGGCACTTCGTGCGCTTAAAGGGCTTGTAAAGTTGCAAGCTTTGGTGAGAGGTCACAATGTGAGAAAGCAAGCAAAGATGACTCTCAAGTGCATGCAAGCTCTGGTTCGTGTGCAGGCTCGGGTGCTTGATCAGCGCACCAGGCTCTCTCATGAAGGCAGCAGAAAGTCTGCATTTAGTGACACCAATAGCGTTTGGGAATCAAGGTATCTTCAGGACATTTCAGACAGAAAGTCCATGCAGTCTAGAGAGGGAAGTAGCATAGCAGATGATTGGGATGAACGCCCCCACACAATTGAGGAGGTAAAAGCTATGTTGCAACACAGAAAAGATGCTGCAATGAAGCGTGAGAAAGCCTTGTCCCACGCCTTCTCTCAACAGATATGGAGGAACGGTAGGAGCCCATCAATCGGAAATGAGGATGAGCTTGAAGAGAGACCCAAATGGCTAGATAGATGGATGGCCCCAAAGCCATGGGATAGCAGAGGAAGAGCCTCAACTGACCATAGAGACCCCATCAAGACAGTTGAAATCGACACCTCTCAGCCTTATTCAAGTTTAGCACCTAACTTCCGAAGATCAAGTTCAAGCCAATACCACCAACACCAACAACAAAGACCCAGTTCACCAAAACAAAGACCTAGTTCACCACTCCATAGAGATAGAACCCACCAAAGCCAACCTTTTCATCACCAGTCCCCTGTCACACCATCCCCATCAAAAACCCGGCCTATCCAAGTCCGGTCTGCCAGCCCTCGTTGTGTTAGAGAAGATAGAAGCTCTAATGCATCTCAAACTCCAAGCCTTAGGTCAAACTATTTCTACAGTGGTGCTATGCACCAACATAGCAGGGGTGGTGGTACAAGCACTATTGGCAATAGTGTTGCTACATTGCCTAATTACATGGCAGCAACTGAGTCTGCCAAAGCTCGGATACGCTCTCAGAGTGCACCGCGACAAAGACCATCGACACCAGACCGGGAACGAGGAGCTGGATCAGCAAAGAAAAGGCTTTCATTCCCAGCTCCTGATCCTTACGGTGTGGCAATGGGGTATGGCGGTTATGGACATAGCTTGAGGAGCCCAAGCTTCAAGAGTGTGGCTACATCGCATTTTGGTGTGGAGCAACGGTCTAACTATTCTTCTTGTTGCACTGAGAGTCATGGTGGTGAGGTTTCCCCTTCTTCAACTAGTGACCTTAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

532

Amino Acids

59.5

Weight (kDa)

10.53

Isoelectric Point (pI)

71.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1333
AciI CCGC 2 cut(s) 1331, 1437
AclWI GGATC 2 cut(s) 1381, 1403
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 575
AdeI CACNNNGTG 2 cut(s) 389, 439
AfaI GTAC 1 cut(s) 1240
AfiI CCNNNNNNNGG 2 cut(s) 788, 1308
AgsI TTSAA 6 cut(s) 809, 908, 933, 966, 1471, 1566
AhdI GACNNNNNGTC 1 cut(s) 610
AhlI ACTAGT 1 cut(s) 1568
AjnI CCWGG 1 cut(s) 518
Alw21I GWGCWC 1 cut(s) 1330
Alw26I GTCTC 2 cut(s) 808, 882
Alw44I GTGCAC 1 cut(s) 1326
AlwI GGATC 2 cut(s) 1381, 1403
AlwNI CAGNNNCTG 3 cut(s) 209, 1292, 1406
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 5 cut(s) 171, 243, 305, 840, 1106
ApaLI GTGCAC 1 cut(s) 1326
ApeKI GCWGC 9 cut(s) 191, 206, 209, 257, 278, 281, 537, 713, 1286
ApoI RAATTY 1 cut(s) 124
AspLEI GCGC 3 cut(s) 166, 394, 516
AspS9I GGNCC 1 cut(s) 841
AsuC2I CCSGG 2 cut(s) 1105, 1358
AsuHPI GGTGA 5 cut(s) 436, 996, 1017, 1061, 1559
AvaI CYCGRG 1 cut(s) 498
AxyI CCTNAGG 1 cut(s) 1184
BaeGI GKGCMC 2 cut(s) 385, 1330
BalI TGGCCA 1 cut(s) 245
BanII GRGCYC 2 cut(s) 782, 1463
Bbv12I GWGCWC 1 cut(s) 1330
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 9 cut(s) 196, 203, 218, 244, 290, 293, 549, 700, 1298
BccI CCATC 7 cut(s) 790, 828, 832, 902, 1096, 1102, 1351
BciT130I CCWGG 1 cut(s) 520
BciVI GTATCC 2 cut(s) 359, 1305
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 2 cut(s) 1105, 1358
BcoDI GTCTC 2 cut(s) 808, 882
BcuI ACTAGT 1 cut(s) 1568
BfaI CTAG 6 cut(s) 303, 321, 624, 827, 1020, 1569
BfmI CTRYAG 2 cut(s) 210, 1201
BfoI RGCGCY 1 cut(s) 167
BfuI GTATCC 2 cut(s) 359, 1305
BglI GCCNNNNNGGC 1 cut(s) 290
BglII AGATCT 1 cut(s) 56
BisI GCNGC 9 cut(s) 192, 207, 210, 258, 279, 282, 538, 714, 1287
BlsI GCNGC 9 cut(s) 193, 208, 211, 259, 280, 283, 539, 715, 1288
Bme1390I CCNGG 3 cut(s) 520, 1105, 1358
BmeRI GACNNNNNGTC 1 cut(s) 610
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 3 cut(s) 779, 843, 1460
BmrFI CCNGG 3 cut(s) 520, 1105, 1358
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 2 cut(s) 700, 1175
BmuI ACTGGG 1 cut(s) 993
BoxI GACNNNNGTC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 3 cut(s) 144, 449, 1474
BpuMI CCSGG 2 cut(s) 1105, 1358
BsaBI GATNNNNATC 1 cut(s) 78
BsaI GGTCTC 2 cut(s) 808, 882
BsaJI CCNNGG 1 cut(s) 851
BsaWI WCCGGW 1 cut(s) 1119
BsaXI ACNNNNNCTCC 4 cut(s) 757, 787, 1493, 1523
Bsc4I CCNNNNNNNGG 2 cut(s) 788, 1308
Bse1I ACTGG 2 cut(s) 999, 1072
Bse21I CCTNAGG 1 cut(s) 1184
Bse3DI GCAATG 4 cut(s) 267, 723, 1268, 1431
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 4 cut(s) 661, 805, 843, 1088
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 788, 1308
BseMI GCAATG 4 cut(s) 267, 723, 1268, 1431
BseMII CTCAG 5 cut(s) 243, 935, 1284, 1334, 1524
BseNI ACTGG 2 cut(s) 999, 1072
BseRI GAGGAG 3 cut(s) 692, 1380, 1471
BseSI GKGCMC 2 cut(s) 385, 1330
BseXI GCAGC 9 cut(s) 196, 203, 218, 244, 290, 293, 549, 700, 1298
BseYI CCCAGC 1 cut(s) 1399
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 1333
BshFI GGCC 5 cut(s) 173, 245, 307, 842, 1108
BsiHKAI GWGCWC 1 cut(s) 1330
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 3 cut(s) 1105, 1120, 1357
BslFI GGGAC 2 cut(s) 724, 1060
BslI CCNNNNNNNGG 2 cut(s) 788, 1308
BsmAI GTCTC 2 cut(s) 808, 882
BsmFI GGGAC 2 cut(s) 724, 1060
BsnI GGCC 5 cut(s) 173, 245, 307, 842, 1108
Bso31I GGTCTC 2 cut(s) 808, 882
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 4 cut(s) 385, 782, 1330, 1463
Bsp143I GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 2 cut(s) 1331, 1437
BspANI GGCC 5 cut(s) 173, 245, 307, 842, 1108
BspCNI CTCAG 5 cut(s) 244, 934, 1285, 1333, 1525
BspFNI CGCG 1 cut(s) 1333
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 779, 843, 1460
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 2 cut(s) 1381, 1403
BspQI GCTCTTC 1 cut(s) 862
BspTNI GGTCTC 2 cut(s) 808, 882
BsrDI GCAATG 4 cut(s) 267, 723, 1268, 1431
BsrI ACTGG 2 cut(s) 999, 1072
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
BssT1I CCWWGG 1 cut(s) 851
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 6 cut(s) 200, 773, 904, 1205, 1418, 1509
Bst6I CTCTTC 2 cut(s) 804, 862
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 7 cut(s) 231, 417, 450, 473, 477, 495, 1129
BstDEI CTNAG 7 cut(s) 252, 921, 1184, 1293, 1320, 1533, 1577
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 4 cut(s) 661, 805, 843, 1088
BstFNI CGCG 1 cut(s) 1333
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 3 cut(s) 166, 394, 516
BstKTI GATC 6 cut(s) 59, 82, 511, 959, 1376, 1411
BstMAI GTCTC 2 cut(s) 808, 882
BstMBI GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 2 cut(s) 227, 475
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 518, 1103, 1356
BstSFI CTRYAG 2 cut(s) 210, 1201
BstSLI GKGCMC 2 cut(s) 385, 1330
BstUI CGCG 1 cut(s) 1333
BstV1I GCAGC 9 cut(s) 196, 203, 218, 244, 290, 293, 549, 700, 1298
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 1 cut(s) 56
Bsu36I CCTNAGG 1 cut(s) 1184
BsuI GTATCC 2 cut(s) 359, 1305
BsuRI GGCC 5 cut(s) 173, 245, 307, 842, 1108
BtgI CCRYGG 1 cut(s) 851
BtgZI GCGATG 1 cut(s) 1470
BtsCI GGATG 4 cut(s) 661, 805, 843, 1088
BtsIMutI CAGTG 2 cut(s) 1210, 1530
Cac8I GCNNGC 7 cut(s) 231, 417, 450, 473, 477, 495, 1129
CaiI CAGNNNCTG 3 cut(s) 209, 1292, 1406
CciI TCATGA 1 cut(s) 529
CfoI GCGC 3 cut(s) 166, 394, 516
Cfr13I GGNCC 1 cut(s) 841
Csp6I GTAC 1 cut(s) 1239
CviQI GTAC 1 cut(s) 1239
DdeI CTNAG 7 cut(s) 252, 921, 1184, 1293, 1320, 1533, 1577
DpnI GATC 6 cut(s) 58, 81, 510, 958, 1375, 1410
DpnII GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
DraI TTTAAA 1 cut(s) 129
DraIII CACNNNGTG 2 cut(s) 389, 439
DriI GACNNNNNGTC 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 804, 862
Eam1105I GACNNNNNGTC 1 cut(s) 610
EarI CTCTTC 2 cut(s) 804, 862
Eco130I CCWWGG 1 cut(s) 851
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 782, 1463
Eco31I GGTCTC 2 cut(s) 808, 882
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 1184
Eco88I CYCGRG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 851
EcoT22I ATGCAT 1 cut(s) 1168
EcoT38I GRGCYC 2 cut(s) 782, 1463
ErhI CCWWGG 1 cut(s) 851
FalI AAGNNNNNCTT 2 cut(s) 1045, 1077
FaqI GGGAC 2 cut(s) 724, 1060
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 9 cut(s) 192, 207, 210, 258, 279, 282, 538, 714, 1287
FokI GGATG 4 cut(s) 668, 812, 850, 1075
FriOI GRGCYC 2 cut(s) 782, 1463
Fsp4HI GCNGC 9 cut(s) 192, 207, 210, 258, 279, 282, 538, 714, 1287
FspBI CTAG 6 cut(s) 303, 321, 624, 827, 1020, 1569
GlaI GCGC 3 cut(s) 165, 393, 515
GluI GCNGC 9 cut(s) 192, 207, 210, 258, 279, 282, 538, 714, 1287
GsaI CCCAGC 1 cut(s) 1403
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 5 cut(s) 173, 245, 307, 842, 1108
HapII CCGG 3 cut(s) 1105, 1120, 1357
HhaI GCGC 3 cut(s) 166, 394, 516
Hin6I GCGC 3 cut(s) 164, 392, 514
HinP1I GCGC 3 cut(s) 164, 392, 514
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 2 cut(s) 417, 1465
HinfI GANTC 4 cut(s) 460, 578, 1295, 1537
HpaII CCGG 3 cut(s) 1105, 1120, 1357
HphI GGTGA 5 cut(s) 436, 996, 1017, 1061, 1559
Hpy166II GTNNAC 4 cut(s) 33, 1004, 1025, 1328
Hpy188I TCNGA 6 cut(s) 56, 604, 791, 953, 1311, 1323
Hpy188III TCNNGA 8 cut(s) 112, 349, 530, 593, 624, 898, 1406, 1471
Hpy8I GTNNAC 4 cut(s) 33, 1004, 1025, 1328
HpyAV CCTTC 7 cut(s) 4, 96, 318, 527, 757, 1569, 1575
HpyCH4III ACNGT 6 cut(s) 200, 773, 904, 1205, 1418, 1509
HpyF3I CTNAG 7 cut(s) 252, 921, 1184, 1293, 1320, 1533, 1577
HspAI GCGC 3 cut(s) 164, 392, 514
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
LguI GCTCTTC 1 cut(s) 862
LmnI GCTCC 5 cut(s) 777, 1367, 1408, 1458, 1501
Lsp1109I GCAGC 9 cut(s) 196, 203, 218, 244, 290, 293, 549, 700, 1298
LweI GCATC 2 cut(s) 700, 1175
MaeI CTAG 6 cut(s) 303, 321, 624, 827, 1020, 1569
MaeIII GTNAC 4 cut(s) 431, 557, 1081, 1571
MalI GATC 6 cut(s) 58, 81, 510, 958, 1375, 1410
MboI GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
MboII GAAGA 9 cut(s) 19, 89, 581, 821, 879, 966, 1160, 1512, 1554
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 4 cut(s) 385, 782, 1330, 1463
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 3 cut(s) 124, 672, 1276
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 3 cut(s) 454, 1304, 1546
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 1168
MscI TGGCCA 1 cut(s) 245
MseI TTAA 2 cut(s) 128, 396
MslI CAYNNNNRTG 2 cut(s) 1494, 1545
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 2 cut(s) 209, 251
MspI CCGG 3 cut(s) 1105, 1120, 1357
MspR9I CCNGG 3 cut(s) 520, 1105, 1358
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 520
MvnI CGCG 1 cut(s) 1333
NciI CCSGG 2 cut(s) 1105, 1358
NcoI CCATGG 1 cut(s) 851
NdeII GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
NlaIV GGNNCC 3 cut(s) 779, 843, 1460
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 4 cut(s) 431, 557, 1081, 1571
NsiI ATGCAT 1 cut(s) 1168
NspI RCATGY 2 cut(s) 227, 475
PaeI GCATGC 1 cut(s) 475
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 862
PfeI GAWTC 1 cut(s) 578
PkrI GCNGC 9 cut(s) 193, 208, 211, 259, 280, 283, 539, 715, 1288
PleI GAGTC 3 cut(s) 454, 1303, 1545
PpsI GAGTC 3 cut(s) 454, 1303, 1545
PshAI GACNNNNGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 1399
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 3 cut(s) 779, 843, 1460
PspPI GGNCC 1 cut(s) 841
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 3 cut(s) 209, 1292, 1406
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 2 cut(s) 209, 251
RsaI GTAC 1 cut(s) 1240
RsaNI GTAC 1 cut(s) 1239
RseI CAYNNNNRTG 2 cut(s) 1494, 1545
SapI GCTCTTC 1 cut(s) 862
SaqAI TTAA 2 cut(s) 128, 396
SatI GCNGC 9 cut(s) 192, 207, 210, 258, 279, 282, 538, 714, 1287
Sau3AI GATC 6 cut(s) 56, 79, 508, 956, 1373, 1408
Sau96I GGNCC 1 cut(s) 841
SchI GAGTC 3 cut(s) 454, 1304, 1546
ScrFI CCNGG 3 cut(s) 520, 1105, 1358
SduI GDGCHC 4 cut(s) 385, 782, 1330, 1463
SfaNI GCATC 2 cut(s) 700, 1175
SfcI CTRYAG 2 cut(s) 210, 1201
SmiI ATTTAAAT 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 1494, 1545
SmlI CTYRAG 3 cut(s) 159, 464, 1453
SmoI CTYRAG 3 cut(s) 159, 464, 1453
SpeI ACTAGT 1 cut(s) 1568
SphI GCATGC 1 cut(s) 475
Sse9I AATT 3 cut(s) 124, 672, 1276
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 2 cut(s) 1331, 1437
SspMI CTAG 6 cut(s) 303, 321, 624, 827, 1020, 1569
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 518, 1103, 1356
StyI CCWWGG 1 cut(s) 851
SwaI ATTTAAAT 1 cut(s) 129
TaaI ACNGT 6 cut(s) 200, 773, 904, 1205, 1418, 1509
TaqI TCGA 2 cut(s) 912, 1346
TasI AATT 3 cut(s) 124, 672, 1276
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 2 cut(s) 128, 396
Tru9I TTAA 2 cut(s) 128, 396
TscAI CASTG 2 cut(s) 1210, 1537
TseFI GTSAC 4 cut(s) 431, 557, 1081, 1571
TseI GCWGC 9 cut(s) 191, 206, 209, 257, 278, 281, 537, 713, 1286
Tsp45I GTSAC 4 cut(s) 431, 557, 1081, 1571
TspDTI ATGAA 6 cut(s) 90, 546, 672, 734, 1055, 1383
TspRI CASTG 2 cut(s) 1210, 1537
VneI GTGCAC 1 cut(s) 1326
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 2 cut(s) 227, 475
XspI CTAG 6 cut(s) 303, 321, 624, 827, 1020, 1569
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.