RLG00000027766

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001398
Physical Location & Seq
Forward (+)
14952644 .. 14954660
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027766

Sequence Viewer

Length: 1590 bp
ATGGGGAAGAAGGGAAGCTCCTCTTGGTTGACTGCTGTGAAAAGAGCTTTCAGATCTCCCACTAAGGATGATGAAGATCATAAGAAAAGAGAGAAGCGTAGGTGGATTTTCAGGAAGCCCACGAATTTAAGTCAAGAAAGTCCAAAGGAGAAAACTGAAAATGTATCAGTTGCTGCTGCAGAGCAGAGGCATGCTCTTGATGTTGCTGTGGCCACAGCCGAAGCAGCAATGGCGACTGCTCAAGCGGCTGCCGTCGAAGTGGCTCGGCTGACCAAGCCATCTAACCATGCCAGAGAGCAACTTCAGTTTGCAGCCATTGTCATTCAGACCGCTTTTAGAGGTTACTTGGCAAGGAGGGCGCTTCGTGCGCTTAAAGGGCTCGTGAAGCTGCAAGCTTTGGTGAGAGGACATAATGTGAGGAAGCAAGCGAAGATGACTCTCAGGTGTATGCAAGCTCTGGTTCGAGTTCAAGCTCGGGTTCTTGATCAGAGAACTAGGCTTTCCCATGAAGGTAGTAGAAAATCGGCCTTTAGCGACACTAATAGCAATAGCGCTTGGGAATCGCGGTATCTTCATGACATTTCAGACCGAAAATCCATTCAGTCTAGAGAGGGAGGTAGTATAGCAGATGATTGGGATGAAAGGCCTCACACTATTGAGGAAGTAAAAGCAATGTTGCAACATAGAAAAGATGCTGCAATGAAGCGTGAGAAAGCTTTATCCCACGCCTTTTCTCAACAGATATGGAGAAATGGGAGGAGCCCATCAATGGGGAATGAGGAAGAGCTTGAAGAGAAACCCAAATGGTTAGACAGATGGATGGCCCCAAAGCCATGGGAGAGCAGCAGAGGAAGAGCTTCTACTGACCACAAAGACCCCATCAAAACAGTTGAAATCGACACCTCACAGCCTTATTCAAGTTTATCATCCACTCTCCGAAGATCAAATGCAAGCCAATACCACCAACAAAACCAACAGCAAAGACCTAGTTCACCACTCCATAGAGATAGATCCCACCAAAACCAACACTACCACCACTCCCCCATCACACCCTCGCCATCAAAGAGCCGCCCTCCTCTCCAAGTGCGGTCTGCGAGCCCTCGTTGCGTTAGAGAAGACCGAAGCTCCAATGCGTCTCAAACCCCTAGCCTGAGGTCTAATTATTACTACAATGGTGGTGTTGTGCACCAACATAGCAGGGGCAGCACCAGCACTAGTGGCGGCGGCAATGTTGGTGCTACATTGCCTAATTACATGGCAGCAACTGAATCTGCCAAGGCTCGAATTCGCTCCCAAAGTGCACCGAGGCAAAGGCCTTCGACACCTGATAGGGAGCGAGGAGGAGGAGTTGGATCAGTGAAGAAAAGACTTTCATTTCCAGCTCCCGATCCTTATGGGGTTGTTGGAATGGGGGTTTATGCAGGAGGAGGTTATGGGCATAGCTTGAGGAGTCCGAGCTTTAAGAGTGTGGTGAGTGGATCACACTTTGGGTTGGAGCAACAATCTAACTATTCTTCATGTTGTACTGAGAGTCATGGTGGTGAGGCCTCTCCTTCTTCAACTAGTGACCTTAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

530

Amino Acids

58.99

Weight (kDa)

10.33

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 366 - 484 1.4e-30 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 565
AciI CCGC 7 cut(s) 245, 330, 565, 1069, 1087, 1221, 1224
AclWI GGATC 4 cut(s) 1005, 1360, 1382, 1486
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 124, 1284
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 1525
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 769, 770
AgsI TTSAA 5 cut(s) 470, 791, 893, 918, 1560
AhlI ACTAGT 2 cut(s) 1214, 1562
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
Alw21I GWGCWC 2 cut(s) 1188, 1303
Alw26I GTCTC 1 cut(s) 1140
Alw44I GTGCAC 2 cut(s) 1184, 1299
AlwI GGATC 4 cut(s) 1005, 1360, 1382, 1486
AlwNI CAGNNNCTG 2 cut(s) 173, 1265
Ama87I CYCGRG 1 cut(s) 474
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 6 cut(s) 210, 525, 644, 822, 1313, 1545
ApaLI GTGCAC 2 cut(s) 1184, 1299
ApoI RAATTY 2 cut(s) 124, 1284
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 3 cut(s) 361, 370, 554
AspS9I GGNCC 1 cut(s) 823
AsuHPI GGTGA 4 cut(s) 412, 984, 1483, 1553
AvaI CYCGRG 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 1151
BaeGI GKGCMC 2 cut(s) 1188, 1303
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 3 cut(s) 381, 764, 1100
BarI GAAGNNNNNNTAC 2 cut(s) 844, 876
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 2 cut(s) 1188, 1303
BccI CCATC 7 cut(s) 286, 772, 810, 814, 887, 1052, 1066
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 1140
BcuI ACTAGT 2 cut(s) 1214, 1562
BfaI CTAG 6 cut(s) 495, 606, 987, 1146, 1215, 1563
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 362, 555
BglII AGATCT 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 2 cut(s) 761, 825
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 1122
BplI GAGNNNNNCTC 4 cut(s) 178, 210, 1057, 1089
BpuEI CTTGAG 2 cut(s) 225, 1465
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 833, 1275, 1304
BsaXI ACNNNNNCTCC 6 cut(s) 1022, 1052, 1109, 1139, 1332, 1362
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 770
Bse21I CCTNAGG 1 cut(s) 1151
Bse3DI GCAATG 5 cut(s) 234, 678, 705, 1234, 1241
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 833, 1275, 1304
BseGI GGATG 4 cut(s) 73, 643, 825, 926
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 769, 770
BseMI GCAATG 5 cut(s) 234, 678, 705, 1234, 1241
BseMII CTCAG 3 cut(s) 454, 1142, 1518
BseRI GAGGAG 8 cut(s) 10, 772, 1065, 1353, 1356, 1359, 1440, 1462
BseSI GKGCMC 2 cut(s) 1188, 1303
Bsh1236I CGCG 1 cut(s) 565
BshFI GGCC 6 cut(s) 212, 527, 646, 824, 1315, 1547
BsiHKAI GWGCWC 2 cut(s) 1188, 1303
BsiHKCI CYCGRG 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 769, 770
BsmAI GTCTC 1 cut(s) 1140
BsmBI CGTCTC 1 cut(s) 1140
BsnI GGCC 6 cut(s) 212, 527, 646, 824, 1315, 1547
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 5 cut(s) 381, 764, 1100, 1188, 1303
Bsp143I GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
Bsp19I CCATGG 1 cut(s) 833
BspACI CCGC 7 cut(s) 245, 330, 565, 1069, 1087, 1221, 1224
BspANI GGCC 6 cut(s) 212, 527, 646, 824, 1315, 1547
BspCNI CTCAG 3 cut(s) 453, 1143, 1519
BspFNI CGCG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 761, 825
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 4 cut(s) 1005, 1360, 1382, 1486
BspQI GCTCTTC 2 cut(s) 777, 847
BsrDI GCAATG 5 cut(s) 234, 678, 705, 1234, 1241
BssECI CCNNGG 3 cut(s) 833, 1275, 1304
BssMI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 833, 1275
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 889
Bst6I CTCTTC 3 cut(s) 777, 786, 847
BstC8I GCNNGC 6 cut(s) 192, 393, 426, 453, 952, 1096
BstDEI CTNAG 5 cut(s) 63, 440, 1151, 1527, 1571
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 4 cut(s) 73, 643, 825, 926
BstFNI CGCG 1 cut(s) 565
BstH2I RGCGCY 2 cut(s) 362, 555
BstHHI GCGC 3 cut(s) 361, 370, 554
BstKTI GATC 8 cut(s) 56, 79, 487, 944, 1013, 1355, 1390, 1481
BstMAI GTCTC 1 cut(s) 1140
BstMBI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 1188, 1303
BstUI CGCG 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 1122
BstX2I RGATCY 2 cut(s) 53, 1010
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 2 cut(s) 53, 1010
Bsu36I CCTNAGG 1 cut(s) 1151
BsuRI GGCC 6 cut(s) 212, 527, 646, 824, 1315, 1547
BtgI CCRYGG 1 cut(s) 833
BtsCI GGATG 4 cut(s) 73, 643, 825, 926
BtsIMutI CAGTG 1 cut(s) 1362
Cac8I GCNNGC 6 cut(s) 192, 393, 426, 453, 952, 1096
CaiI CAGNNNCTG 2 cut(s) 173, 1265
CciI TCATGA 1 cut(s) 574
CfoI GCGC 3 cut(s) 361, 370, 554
Cfr13I GGNCC 1 cut(s) 823
CseI GACGC 1 cut(s) 1122
Csp6I GTAC 1 cut(s) 1524
CviAII CATG 8 cut(s) 191, 287, 506, 575, 834, 1255, 1518, 1535
CviQI GTAC 1 cut(s) 1524
DdeI CTNAG 5 cut(s) 63, 440, 1151, 1527, 1571
DpnI GATC 8 cut(s) 55, 78, 486, 943, 1012, 1354, 1389, 1480
DpnII GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 777, 786, 847
EarI CTCTTC 3 cut(s) 777, 786, 847
Eco130I CCWWGG 2 cut(s) 833, 1275
Eco147I AGGCCT 3 cut(s) 646, 1315, 1547
Eco24I GRGCYC 3 cut(s) 381, 764, 1100
Eco47III AGCGCT 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 1151
Eco88I CYCGRG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 1284
EcoT14I CCWWGG 2 cut(s) 833, 1275
EcoT38I GRGCYC 3 cut(s) 381, 764, 1100
ErhI CCWWGG 2 cut(s) 833, 1275
Esp3I CGTCTC 1 cut(s) 1140
FaeI CATG 8 cut(s) 194, 290, 509, 578, 837, 1258, 1521, 1538
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FatI CATG 8 cut(s) 190, 286, 505, 574, 833, 1254, 1517, 1534
FbaI TGATCA 1 cut(s) 484
FokI GGATG 4 cut(s) 80, 650, 832, 913
FriOI GRGCYC 3 cut(s) 381, 764, 1100
FspBI CTAG 6 cut(s) 495, 606, 987, 1146, 1215, 1563
GlaI GCGC 3 cut(s) 360, 369, 553
HaeII RGCGCY 2 cut(s) 362, 555
HaeIII GGCC 6 cut(s) 212, 527, 646, 824, 1315, 1547
HgaI GACGC 1 cut(s) 1122
HhaI GCGC 3 cut(s) 361, 370, 554
Hin1II CATG 8 cut(s) 194, 290, 509, 578, 837, 1258, 1521, 1538
Hin6I GCGC 3 cut(s) 359, 368, 552
HinP1I GCGC 3 cut(s) 359, 368, 552
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 393, 714
HinfI GANTC 5 cut(s) 436, 560, 1268, 1450, 1531
HphI GGTGA 4 cut(s) 412, 984, 1483, 1553
Hpy166II GTNNAC 4 cut(s) 30, 992, 1186, 1301
Hpy188I TCNGA 6 cut(s) 53, 327, 489, 586, 938, 1455
Hpy188III TCNNGA 8 cut(s) 112, 134, 197, 382, 482, 575, 606, 1385
Hpy8I GTNNAC 4 cut(s) 30, 992, 1186, 1301
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 4, 503, 1326, 1563, 1569
HpyCH4III ACNGT 1 cut(s) 889
HpyF3I CTNAG 5 cut(s) 63, 440, 1151, 1527, 1571
Hsp92II CATG 8 cut(s) 194, 290, 509, 578, 837, 1258, 1521, 1538
HspAI GCGC 3 cut(s) 359, 368, 552
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
LguI GCTCTTC 2 cut(s) 777, 847
LmnI GCTCC 7 cut(s) 23, 759, 1130, 1295, 1333, 1387, 1495
LweI GCATC 1 cut(s) 682
MaeI CTAG 6 cut(s) 495, 606, 987, 1146, 1215, 1563
MaeIII GTNAC 2 cut(s) 341, 1565
MalI GATC 8 cut(s) 55, 78, 486, 943, 1012, 1354, 1389, 1480
MboI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
MflI RGATCY 2 cut(s) 53, 1010
MhlI GDGCHC 5 cut(s) 381, 764, 1100, 1188, 1303
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 124, 1159, 1249, 1284
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 3 cut(s) 430, 1459, 1540
MmeI TCCRAC 3 cut(s) 1330, 1384, 1473
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 856
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 128, 372, 1461
MslI CAYNNNNRTG 1 cut(s) 1539
Msp20I TGGCCA 1 cut(s) 212
MvnI CGCG 1 cut(s) 565
NcoI CCATGG 1 cut(s) 833
NdeII GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
NlaIII CATG 8 cut(s) 194, 290, 509, 578, 837, 1258, 1521, 1538
NlaIV GGNNCC 2 cut(s) 761, 825
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 1565
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PagI TCATGA 1 cut(s) 574
PceI AGGCCT 3 cut(s) 646, 1315, 1547
PciSI GCTCTTC 2 cut(s) 777, 847
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 2 cut(s) 560, 1268
PleI GAGTC 3 cut(s) 430, 1458, 1539
PpsI GAGTC 3 cut(s) 430, 1458, 1539
PspN4I GGNNCC 2 cut(s) 761, 825
PspPI GGNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 173, 1265
PsuI RGATCY 2 cut(s) 53, 1010
RsaI GTAC 1 cut(s) 1525
RsaNI GTAC 1 cut(s) 1524
RseI CAYNNNNRTG 1 cut(s) 1539
SapI GCTCTTC 2 cut(s) 777, 847
SaqAI TTAA 3 cut(s) 128, 372, 1461
Sau3AI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1352, 1387, 1478
Sau96I GGNCC 1 cut(s) 823
SchI GAGTC 3 cut(s) 430, 1459, 1540
SduI GDGCHC 5 cut(s) 381, 764, 1100, 1188, 1303
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 1539
SmlI CTYRAG 2 cut(s) 240, 1444
SmoI CTYRAG 2 cut(s) 240, 1444
SpeI ACTAGT 2 cut(s) 1214, 1562
SphI GCATGC 1 cut(s) 194
Sse9I AATT 4 cut(s) 124, 1159, 1249, 1284
SseBI AGGCCT 3 cut(s) 646, 1315, 1547
SsiI CCGC 7 cut(s) 245, 330, 565, 1069, 1087, 1221, 1224
SspMI CTAG 6 cut(s) 495, 606, 987, 1146, 1215, 1563
StuI AGGCCT 3 cut(s) 646, 1315, 1547
StyI CCWWGG 2 cut(s) 833, 1275
TaaI ACNGT 1 cut(s) 889
TaqI TCGA 5 cut(s) 255, 463, 897, 1282, 1319
TaqII GACCGA 2 cut(s) 603, 1134
TasI AATT 4 cut(s) 124, 1159, 1249, 1284
TatI WGTACW 1 cut(s) 1523
TauI GCSGC 4 cut(s) 248, 1071, 1224, 1227
TfiI GAWTC 2 cut(s) 560, 1268
Tru1I TTAA 3 cut(s) 128, 372, 1461
Tru9I TTAA 3 cut(s) 128, 372, 1461
TscAI CASTG 1 cut(s) 1362
TseFI GTSAC 1 cut(s) 1565
Tsp45I GTSAC 1 cut(s) 1565
TspDTI ATGAA 7 cut(s) 87, 522, 563, 654, 716, 1362, 1506
TspRI CASTG 1 cut(s) 1362
VneI GTGCAC 2 cut(s) 1184, 1299
XapI RAATTY 2 cut(s) 124, 1284
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 6 cut(s) 495, 606, 987, 1146, 1215, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.