RchiOBHm_Chr1g0382751

IQ-DOMAIN 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001398
Physical Location & Seq
Reverse (-)
67425264 .. 67428014
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60569

Sequence Viewer

Length: 1626 bp
ATGGGGAAGACTGGAGGAGGAGGCTCATGGTTAACTGCGGTCAAAAGGGCTTTCAGATCTCCCACCAAGAATGAGAAAAGCAACACCAGGAGGAGAGAAGAACTACAAGAACATGAGGAAGAAGAAAAGAAGAGAGGAAAAAGGAGATGGATTTTCAGGAAGCCTGTGAATCAGGAAACAGTCATACATGTGCAGCATACTGAAGAGAAAGCCTTATCTAAAAATGCCACAGAAACTGCTCAGACTGCAACTGCGGCTTTAGTAACTCCTGTTTGCCAAGATAATGAGACTGTTACTAATGGAGCTGCTGAAGAACAAAGAAATGCTCTTGCAATGGCCGTGGCGACGAAAGCAGCTGCTCAGGCAGCGGTTGCAACTGTCCAAGCAGCGGTGGAAGCTGTTCGTTTCAGTACTAATTCTAGTTCTAGTAACTGTAATCTCTATAGGCCGCGACCTTCTATTTTCGTTAGAGATTATGCTGCCATTGCTATTCAGACTGCCTTCAGAGGATATCTGGCGAGGAGAGCTCTTCGGGCGTTGAAGGCGCTGGTGAAGCTTCAAGCATTAGTGAGAGGCCACAATGTTAGAAAGCGAGCAAAGACGACTCTACAATGCATGCAAGCACTGGTTCGAGTCCAAGCTCGGGTTCTTGACCAACGAACTAAGAGGCTTTCGCATCAAGGAAGCCTAGATTCCATGTTCAGTACAGATCATCCCAATTCTAGCTTATGGGGGTCACATTTCTCAGACAGGAAGTCCATTGTAAGCAATTCAAGAGAAGAAGAAAGTAGTACCTTGGATGATGATGAGGATGATTGGGTCCATTGGGATGATCTCCAGCCAAAAACACTAGAGCATATTCAAGCCATGTTGCAGAAAGCGAAAAAAGCTGCAGCATCAAATCGCAAAAGGACTACTCTTGCGTATGCCTTGTCCAACACAAACCAGGAGGAGCTAGAGGAGAAGTTTAATATGCTTGATGGGTGGACAAGAAGAAAGCAGTGGGAGAATGGGAGAGCTTCTTGTGATCAGCAAAGAGCAGACCCTATTGTAAAAACAGTTGAAATGGACACCTCTAGACCTTACTCTTATAGTCCAACCACCCCCAATTTGAAACGAGCAGAATATCAATACCAGTGCCATCACTACCAACAACAACAAAGACCTCATCAGTACTCATATCCGGTTGCCTCTCCACAAGCACCAACCACACCATTTGCATCCCTTACAAGAATTCCGCAAGTGCACTCGGCTAGCCCTCGTTGCTACATTAGAGAAACCGGTCATGGAGTTGGAATGGGGGAGAGTGAAGTGCCAAACTACATGGCTGCAACAGCTTCAGCCAAGGCTAGGATTCGGTCACAAAGCGCACCAAGGCACAGACCTGCAACACAGGACAGAGAAAAACAGTGCTCAGCAAGGAAGCGCCTTTCATTCCCGGTTCCATCTGAGCCATCTGGTACTGATTGCACTTCAGACATCGAGTTGAAGAGCCCGAATTATAAGGGGATTAATGGAGGCCAAGCAATCCGAAGAGAGCACAAAGCAAGCAATGTGTCTTATTATGTAACAGACAGTGAGACATCTCCAACTTCCAGAGGTGAACTAAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

541

Amino Acids

60.98

Weight (kDa)

9.77

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 392 - 492 1.4e-18 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1503
Acc36I ACCTGC 1 cut(s) 1393
AccII CGCG 1 cut(s) 451
AciI CCGC 6 cut(s) 38, 254, 368, 389, 449, 1238
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 1233
AcuI CTGAAG 5 cut(s) 222, 330, 487, 1323, 1458
AfaI GTAC 5 cut(s) 412, 706, 793, 1175, 1462
AfiI CCNNNNNNNGG 3 cut(s) 388, 643, 1350
AflIII ACRYGT 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 1280
AgsI TTSAA 7 cut(s) 541, 560, 774, 863, 1064, 1114, 1489
AhdI GACNNNNNGTC 1 cut(s) 754
AjnI CCWGG 2 cut(s) 86, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
Alw21I GWGCWC 4 cut(s) 529, 1248, 1415, 1542
Alw26I GTCTC 2 cut(s) 281, 1574
Alw44I GTGCAC 1 cut(s) 1244
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 4 cut(s) 336, 446, 574, 1519
ApaLI GTGCAC 1 cut(s) 1244
ApoI RAATTY 1 cut(s) 1233
AseI ATTAAT 1 cut(s) 1512
AsiGI ACCGGT 1 cut(s) 1280
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 3 cut(s) 547, 1370, 1428
AspS9I GGNCC 1 cut(s) 820
AsuC2I CCSGG 1 cut(s) 1439
AsuHPI GGTGA 2 cut(s) 562, 1613
AsuNHI GCTAGC 1 cut(s) 1253
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 1248
BanII GRGCYC 2 cut(s) 529, 1496
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 4 cut(s) 529, 1248, 1415, 1542
BccI CCATC 5 cut(s) 141, 974, 1149, 1453, 1462
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 88, 947
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 1439
BcoDI GTCTC 2 cut(s) 281, 1574
BfaI CTAG 9 cut(s) 420, 426, 689, 723, 851, 956, 1077, 1254, 1350
BfmI CTRYAG 2 cut(s) 442, 891
BfoI RGCGCY 2 cut(s) 548, 1429
BfuAI ACCTGC 1 cut(s) 1393
BglII AGATCT 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 1414
BmcAI AGTACT 2 cut(s) 412, 1175
Bme1390I CCNGG 3 cut(s) 88, 947, 1439
Bme18I GGWCC 1 cut(s) 820
BmeRI GACNNNNNGTC 1 cut(s) 754
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 821, 1443
BmrFI CCNGG 3 cut(s) 88, 947, 1439
BmsI GCATC 3 cut(s) 685, 905, 1229
BmtI GCTAGC 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 511, 543
BpmI CTGGAG 2 cut(s) 33, 821
Bpu10I CCTNAGC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 1414
BpuMI CCSGG 1 cut(s) 1439
BsaJI CCNNGG 4 cut(s) 339, 795, 1344, 1373
BsaWI WCCGGW 2 cut(s) 1183, 1280
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 643, 1350
Bse118I RCCGGY 1 cut(s) 1280
Bse1I ACTGG 3 cut(s) 16, 630, 1135
Bse3DI GCAATG 3 cut(s) 339, 483, 1558
BseBI CCWGG 2 cut(s) 88, 947
BseDI CCNNGG 4 cut(s) 339, 795, 1344, 1373
BseGI GGATG 5 cut(s) 712, 805, 817, 835, 1220
BseLI CCNNNNNNNGG 3 cut(s) 388, 643, 1350
BseMI GCAATG 3 cut(s) 339, 483, 1558
BseMII CTCAG 5 cut(s) 254, 374, 759, 1428, 1440
BseNI ACTGG 3 cut(s) 16, 630, 1135
BseRI GAGGAG 6 cut(s) 30, 33, 106, 535, 965, 974
BseSI GKGCMC 1 cut(s) 1248
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 4 cut(s) 338, 448, 576, 1521
BshTI ACCGGT 1 cut(s) 1280
BsiHKAI GWGCWC 4 cut(s) 529, 1248, 1415, 1542
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 3 cut(s) 1184, 1281, 1439
BslI CCNNNNNNNGG 3 cut(s) 388, 643, 1350
BsmAI GTCTC 2 cut(s) 281, 1574
BsnI GGCC 4 cut(s) 338, 448, 576, 1521
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 5 cut(s) 529, 1248, 1415, 1496, 1542
Bsp143I GATC 4 cut(s) 56, 709, 832, 1027
Bsp1720I GCTNAGC 1 cut(s) 1414
BspACI CCGC 6 cut(s) 38, 254, 368, 389, 449, 1238
BspANI GGCC 4 cut(s) 338, 448, 576, 1521
BspCNI CTCAG 5 cut(s) 253, 373, 758, 1427, 1441
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 821, 1443
BspMAI CTGCAG 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 1393
BspOI GCTAGC 1 cut(s) 1257
BspQI GCTCTTC 2 cut(s) 534, 1484
BsrDI GCAATG 3 cut(s) 339, 483, 1558
BsrFI RCCGGY 1 cut(s) 1280
BsrI ACTGG 3 cut(s) 16, 630, 1135
BssAI RCCGGY 1 cut(s) 1280
BssECI CCNNGG 4 cut(s) 339, 795, 1344, 1373
BssMI GATC 4 cut(s) 56, 709, 832, 1027
BssT1I CCWWGG 3 cut(s) 795, 1344, 1373
Bst2UI CCWGG 2 cut(s) 88, 947
Bst4CI ACNGT 7 cut(s) 181, 292, 379, 434, 1060, 1410, 1577
Bst6I CTCTTC 5 cut(s) 125, 198, 534, 1484, 1528
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 5 cut(s) 594, 617, 621, 1255, 1549
BstDEI CTNAG 7 cut(s) 240, 360, 663, 745, 1414, 1449, 1607
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 712, 805, 817, 835, 1220
BstFNI CGCG 1 cut(s) 451
BstH2I RGCGCY 2 cut(s) 548, 1429
BstHHI GCGC 3 cut(s) 547, 1370, 1428
BstKTI GATC 4 cut(s) 59, 712, 835, 1030
BstMAI GTCTC 2 cut(s) 281, 1574
BstMBI GATC 4 cut(s) 56, 709, 832, 1027
BstNI CCWGG 2 cut(s) 88, 947
BstNSI RCATGY 2 cut(s) 191, 619
BstSCI CCNGG 3 cut(s) 86, 945, 1437
BstSFI CTRYAG 2 cut(s) 442, 891
BstSLI GKGCMC 1 cut(s) 1248
BstUI CGCG 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 4 cut(s) 338, 448, 576, 1521
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 5 cut(s) 712, 805, 817, 835, 1220
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 5 cut(s) 623, 1007, 1142, 1415, 1582
BveI ACCTGC 1 cut(s) 1393
Cac8I GCNNGC 5 cut(s) 594, 617, 621, 1255, 1549
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 3 cut(s) 547, 1370, 1428
Cfr10I RCCGGY 1 cut(s) 1280
Cfr13I GGNCC 1 cut(s) 820
Csp6I GTAC 5 cut(s) 411, 705, 792, 1174, 1461
CspAI ACCGGT 1 cut(s) 1280
CspCI CAANNNNNGTGG 4 cut(s) 321, 356, 1198, 1233
CviAII CATG 8 cut(s) 27, 113, 188, 616, 697, 868, 1286, 1324
CviQI GTAC 5 cut(s) 411, 705, 792, 1174, 1461
DdeI CTNAG 7 cut(s) 240, 360, 663, 745, 1414, 1449, 1607
DpnI GATC 4 cut(s) 58, 711, 834, 1029
DpnII GATC 4 cut(s) 56, 709, 832, 1027
DriI GACNNNNNGTC 1 cut(s) 754
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 5 cut(s) 125, 198, 534, 1484, 1528
Eam1105I GACNNNNNGTC 1 cut(s) 754
EarI CTCTTC 5 cut(s) 125, 198, 534, 1484, 1528
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 3 cut(s) 795, 1344, 1373
Eco24I GRGCYC 2 cut(s) 529, 1496
Eco32I GATATC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 820
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 5 cut(s) 222, 330, 487, 1323, 1458
Eco88I CYCGRG 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 1233
EcoRII CCWGG 2 cut(s) 86, 945
EcoRV GATATC 1 cut(s) 512
EcoT14I CCWWGG 3 cut(s) 795, 1344, 1373
EcoT22I ATGCAT 1 cut(s) 617
EcoT38I GRGCYC 2 cut(s) 529, 1496
ErhI CCWWGG 3 cut(s) 795, 1344, 1373
FaeI CATG 8 cut(s) 30, 116, 191, 619, 700, 871, 1289, 1327
FatI CATG 8 cut(s) 26, 112, 187, 615, 696, 867, 1285, 1323
FbaI TGATCA 1 cut(s) 1027
FokI GGATG 5 cut(s) 699, 812, 824, 842, 1207
FriOI GRGCYC 2 cut(s) 529, 1496
FspBI CTAG 9 cut(s) 420, 426, 689, 723, 851, 956, 1077, 1254, 1350
GlaI GCGC 3 cut(s) 546, 1369, 1427
GsuI CTGGAG 2 cut(s) 33, 821
HaeII RGCGCY 2 cut(s) 548, 1429
HaeIII GGCC 4 cut(s) 338, 448, 576, 1521
HapII CCGG 3 cut(s) 1184, 1281, 1439
HhaI GCGC 3 cut(s) 547, 1370, 1428
Hin1II CATG 8 cut(s) 30, 116, 191, 619, 700, 871, 1289, 1327
Hin6I GCGC 3 cut(s) 545, 1368, 1426
HinP1I GCGC 3 cut(s) 545, 1368, 1426
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 5 cut(s) 169, 604, 633, 692, 1354
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 1184, 1281, 1439
HphI GGTGA 2 cut(s) 562, 1613
Hpy166II GTNNAC 4 cut(s) 33, 987, 1246, 1604
Hpy188I TCNGA 8 cut(s) 56, 243, 495, 506, 748, 1450, 1477, 1532
Hpy188III TCNNGA 6 cut(s) 157, 173, 650, 774, 1077, 1596
Hpy8I GTNNAC 4 cut(s) 33, 987, 1246, 1604
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 4 cut(s) 465, 511, 535, 1605
HpyCH4III ACNGT 7 cut(s) 181, 292, 379, 434, 1060, 1410, 1577
HpyF3I CTNAG 7 cut(s) 240, 360, 663, 745, 1414, 1449, 1607
Hsp92II CATG 8 cut(s) 30, 116, 191, 619, 700, 871, 1289, 1327
HspAI GCGC 3 cut(s) 545, 1368, 1426
Ksp22I TGATCA 1 cut(s) 1027
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 56, 709, 832, 1027
LguI GCTCTTC 2 cut(s) 534, 1484
LmnI GCTCC 2 cut(s) 302, 952
LweI GCATC 3 cut(s) 685, 905, 1229
MaeI CTAG 9 cut(s) 420, 426, 689, 723, 851, 956, 1077, 1254, 1350
MaeIII GTNAC 6 cut(s) 262, 292, 428, 735, 1359, 1567
MalI GATC 4 cut(s) 58, 711, 834, 1029
MboI GATC 4 cut(s) 56, 709, 832, 1027
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 5 cut(s) 529, 1248, 1415, 1496, 1542
MluCI AATT 6 cut(s) 415, 718, 769, 1108, 1233, 1498
MlyI GAGTC 2 cut(s) 598, 642
MmeI TCCRAC 4 cut(s) 960, 1121, 1273, 1613
Mph1103I ATGCAT 1 cut(s) 617
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 3 cut(s) 32, 969, 1512
MslI CAYNNNNRTG 2 cut(s) 188, 828
MspA1I CMGCKG 3 cut(s) 356, 368, 389
MspI CCGG 3 cut(s) 1184, 1281, 1439
MspR9I CCNGG 3 cut(s) 88, 947, 1439
MvaI CCWGG 2 cut(s) 88, 947
MvnI CGCG 1 cut(s) 451
NciI CCSGG 1 cut(s) 1439
NdeII GATC 4 cut(s) 56, 709, 832, 1027
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 8 cut(s) 30, 116, 191, 619, 700, 871, 1289, 1327
NlaIV GGNNCC 2 cut(s) 821, 1443
NmeAIII GCCGAG 1 cut(s) 1229
NmuCI GTSAC 2 cut(s) 735, 1359
NsiI ATGCAT 1 cut(s) 617
NspI RCATGY 2 cut(s) 191, 619
PaeI GCATGC 1 cut(s) 619
PciI ACATGT 1 cut(s) 187
PciSI GCTCTTC 2 cut(s) 534, 1484
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 169, 692, 1354
PinAI ACCGGT 1 cut(s) 1280
PleI GAGTC 2 cut(s) 598, 641
PpsI GAGTC 2 cut(s) 598, 641
PscI ACATGT 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 1512
PsiI TTATAA 1 cut(s) 1503
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 86, 945
PspGI CCWGG 2 cut(s) 86, 945
PspN4I GGNNCC 2 cut(s) 821, 1443
PspPI GGNCC 1 cut(s) 820
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 5 cut(s) 412, 706, 793, 1175, 1462
RsaNI GTAC 5 cut(s) 411, 705, 792, 1174, 1461
RseI CAYNNNNRTG 2 cut(s) 188, 828
SacI GAGCTC 1 cut(s) 529
SapI GCTCTTC 2 cut(s) 534, 1484
SaqAI TTAA 3 cut(s) 32, 969, 1512
Sau3AI GATC 4 cut(s) 56, 709, 832, 1027
Sau96I GGNCC 1 cut(s) 820
ScaI AGTACT 2 cut(s) 412, 1175
SchI GAGTC 2 cut(s) 598, 642
ScrFI CCNGG 3 cut(s) 88, 947, 1439
SduI GDGCHC 5 cut(s) 529, 1248, 1415, 1496, 1542
SfaNI GCATC 3 cut(s) 685, 905, 1229
SfcI CTRYAG 2 cut(s) 442, 891
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 2 cut(s) 188, 828
SphI GCATGC 1 cut(s) 619
Sse9I AATT 6 cut(s) 415, 718, 769, 1108, 1233, 1498
SsiI CCGC 6 cut(s) 38, 254, 368, 389, 449, 1238
SspMI CTAG 9 cut(s) 420, 426, 689, 723, 851, 956, 1077, 1254, 1350
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 86, 945, 1437
StyI CCWWGG 3 cut(s) 795, 1344, 1373
TaaI ACNGT 7 cut(s) 181, 292, 379, 434, 1060, 1410, 1577
TaqI TCGA 2 cut(s) 631, 1482
TaqII GACCGA 1 cut(s) 1347
TasI AATT 6 cut(s) 415, 718, 769, 1108, 1233, 1498
TatI WGTACW 3 cut(s) 410, 704, 1173
TauI GCSGC 2 cut(s) 257, 451
TfiI GAWTC 3 cut(s) 169, 692, 1354
Tru1I TTAA 3 cut(s) 32, 969, 1512
Tru9I TTAA 3 cut(s) 32, 969, 1512
TscAI CASTG 5 cut(s) 630, 1007, 1142, 1415, 1582
TseFI GTSAC 2 cut(s) 735, 1359
Tsp45I GTSAC 2 cut(s) 735, 1359
TspDTI ATGAA 1 cut(s) 1422
TspRI CASTG 5 cut(s) 630, 1007, 1142, 1415, 1582
VneI GTGCAC 1 cut(s) 1244
VpaK11BI GGWCC 1 cut(s) 820
VspI ATTAAT 1 cut(s) 1512
XapI RAATTY 1 cut(s) 1233
XbaI TCTAGA 1 cut(s) 1076
XceI RCATGY 2 cut(s) 191, 619
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 9 cut(s) 420, 426, 689, 723, 851, 956, 1077, 1254, 1350
ZrmI AGTACT 2 cut(s) 412, 1175
Zsp2I ATGCAT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.