RchiOBHm_Chr1g0360961

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001398
Physical Location & Seq
Reverse (-)
52892628 .. 52895475
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58590

Sequence Viewer

Length: 1587 bp
ATGGGGAAGAAGGGGGGCTCCTCTTGGTTGACTGCTGTGAAAAGAGCTTTCAGATCTCCCACCAAGGACGATGAAGATCATAAGAAAAGAGAGAAGCGTCGGTGGATTTTCAGGAAGCCCACGAATTTAAGTCAAGAAAGTCCAAAGGAGAAAACTGAAAATGTATCAGTAGCTGCTGCAGAGCAGAGGCATGCTCTTGATGTTGCTGTGGCCACAGCCGAAGCAGCAATGGCGACTGCTCAAGCGGCCGCCGTCGAAGTGGCTCGGCTGACCAAGCCATCTAACCATGCCAGAGAGCAACTTCAGTTTGCAGCCATTGTCATTCAGACCGCTTTTAGAGGTTACTTGGCAAGGAGGGCGCTTCGTGCGCTTAAAGGGCTTGTGAAGCTGCAAGCTTTGGTGAGAGGACACAATGTGAGGAAGCAAGCGAAGATGACTCTCAGGTGTATGCAAGCTCTGGTTCGAGTTCAAGCTCGGGTTCTTGATCAGAGAACTAGGCTTTCCCATGAAGGTAGTAGAAAATCGGCCTTTAGCGACACTAATAGCAATAGCGCTTGGGAATCGCGGTATCTTCAAGACATTTCAGACCGAAAATCCATTCAGTCTAGAGAGGGAAGTAGTATAGCAGATGATTGGGATGAAAGGCCTCACACTATTGAGGAAGTAAAAGCAATGTTGCAACATAGAAAAGAAGCTGCAATGAAGCGTGAGAAAGCTTTATCACACGCCTTTTCTCAACAGATATGGAGAAATGGGAGGAGCCCATCAATGGGGAATGAGGAAGAGCTTGAAGAGAAACCCAAATGGTTAGACAGATGGATGGCCCCAAAGCCATGGGAGAGCAGCAGAGGAAGAGCTTCTACTGACCGCAAAGACCCCATCAAAACAGTTGAAATCGACACCTCGCAGCCTTATTCAAGTTTATCATCCAATTTCCGAAGATCGAATGCAAGCCAATACCACCAACAAAACCAACAGCAAAGACCTAGTTCACCACTCCATAAAGATAGATCCCACCAAAACCAACACTTCCACCACTCCCCCATCACACCCTCACCATCAAAGAGCCGCCCTCCTCTCCAAGTGCGGTCTGCGAGCCCTCGTTGCGTTAGAGAAGACCGAAGCTCCAATGCGTCTCAAACCCCTAGCCTGAGGTCTAATTATTACTACAATGGTGGTGTTGTGCACCAACATAGTAGGGGCAGCACTAGCACTAGTGGCGGCAATGTTGGTGCTACATTGCCTAATTACATGGCAGCAACTGAATCTGCCAAGGCTCGAATTCGCTCCCAAAGTGCACCGAGGCAAAGGCCTTCGACACCTGACAGGGAGCGAGGAGGAGGAGTTGGATCGGTGAAGAAAAGACTTTCGTTTCCAGCTCCCGATCCTTATGGGGTTGTTGGAATGGGGGTTTATGCAGGAGGAGGTTATGGGCATAGCTTGAGGAGTCCGAGCTTTAAGAGTGTGGTGAGTGGATCACACTTTGGGTTGGAGCAACAATCTAACTATTCTTCATGTTGTACTGAGAGTCATGGTGGTGAGGCCTCTCCTTCTTCAACGAGTGACCTTAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

528

Amino Acids

58.96

Weight (kDa)

10.37

Isoelectric Point (pI)

70.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 366 - 483 1.7e-30 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 565
AciI CCGC 8 cut(s) 245, 249, 330, 565, 868, 1069, 1087, 1221
AclWI GGATC 4 cut(s) 1005, 1357, 1379, 1483
AcoI YGGCCR 2 cut(s) 210, 246
AcsI RAATTY 2 cut(s) 124, 1281
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 1 cut(s) 1522
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 769, 770
AgsI TTSAA 6 cut(s) 470, 575, 791, 893, 918, 1557
AhlI ACTAGT 1 cut(s) 1214
Alw21I GWGCWC 2 cut(s) 1188, 1300
Alw26I GTCTC 1 cut(s) 1140
Alw44I GTGCAC 2 cut(s) 1184, 1296
AlwI GGATC 4 cut(s) 1005, 1357, 1379, 1483
AlwNI CAGNNNCTG 2 cut(s) 173, 1262
Ama87I CYCGRG 1 cut(s) 474
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 7 cut(s) 210, 246, 525, 644, 822, 1310, 1542
ApaLI GTGCAC 2 cut(s) 1184, 1296
ApoI RAATTY 2 cut(s) 124, 1281
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 3 cut(s) 361, 370, 554
AspS9I GGNCC 1 cut(s) 823
AsuHPI GGTGA 6 cut(s) 412, 984, 1047, 1366, 1480, 1550
AvaI CYCGRG 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 1151
BaeGI GKGCMC 2 cut(s) 1188, 1300
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 3 cut(s) 20, 764, 1100
BarI GAAGNNNNNNTAC 2 cut(s) 844, 876
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 2 cut(s) 1188, 1300
BccI CCATC 7 cut(s) 286, 772, 810, 814, 887, 1052, 1066
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 1140
BcuI ACTAGT 1 cut(s) 1214
BfaI CTAG 6 cut(s) 495, 606, 987, 1146, 1209, 1215
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 362, 555
BglII AGATCT 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 3 cut(s) 19, 761, 825
BpiI GAAGAC 1 cut(s) 1122
BplI GAGNNNNNCTC 4 cut(s) 178, 210, 1057, 1089
BpuEI CTTGAG 2 cut(s) 225, 1462
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 63, 833, 1272, 1301
BsaXI ACNNNNNCTCC 4 cut(s) 1109, 1139, 1329, 1359
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 770
Bse21I CCTNAGG 1 cut(s) 1151
Bse3DI GCAATG 5 cut(s) 234, 678, 705, 1231, 1238
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 4 cut(s) 63, 833, 1272, 1301
BseGI GGATG 3 cut(s) 643, 825, 926
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 769, 770
BseMI GCAATG 5 cut(s) 234, 678, 705, 1231, 1238
BseMII CTCAG 3 cut(s) 454, 1142, 1515
BseRI GAGGAG 8 cut(s) 10, 772, 1065, 1350, 1353, 1356, 1437, 1459
BseSI GKGCMC 2 cut(s) 1188, 1300
BseX3I CGGCCG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 7 cut(s) 212, 248, 527, 646, 824, 1312, 1544
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 1188, 1300
BsiHKCI CYCGRG 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 769, 770
BsmAI GTCTC 1 cut(s) 1140
BsmBI CGTCTC 1 cut(s) 1140
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 7 cut(s) 212, 248, 527, 646, 824, 1312, 1544
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 5 cut(s) 20, 764, 1100, 1188, 1300
Bsp143I GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
Bsp19I CCATGG 1 cut(s) 833
BspACI CCGC 8 cut(s) 245, 249, 330, 565, 868, 1069, 1087, 1221
BspANI GGCC 7 cut(s) 212, 248, 527, 646, 824, 1312, 1544
BspCNI CTCAG 3 cut(s) 453, 1143, 1516
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 19, 761, 825
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 4 cut(s) 1005, 1357, 1379, 1483
BspQI GCTCTTC 2 cut(s) 777, 847
BsrDI GCAATG 5 cut(s) 234, 678, 705, 1231, 1238
BssECI CCNNGG 4 cut(s) 63, 833, 1272, 1301
BssMI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
BssT1I CCWWGG 3 cut(s) 63, 833, 1272
Bst4CI ACNGT 1 cut(s) 889
Bst6I CTCTTC 3 cut(s) 777, 786, 847
BstC8I GCNNGC 6 cut(s) 192, 393, 426, 453, 952, 1096
BstDEI CTNAG 4 cut(s) 440, 1151, 1524, 1568
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 3 cut(s) 643, 825, 926
BstFNI CGCG 1 cut(s) 565
BstH2I RGCGCY 2 cut(s) 362, 555
BstHHI GCGC 3 cut(s) 361, 370, 554
BstKTI GATC 8 cut(s) 56, 79, 487, 944, 1013, 1352, 1387, 1478
BstMAI GTCTC 1 cut(s) 1140
BstMBI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
BstMCI CGRYCG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 1188, 1300
BstUI CGCG 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 1122
BstX2I RGATCY 2 cut(s) 53, 1010
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 2 cut(s) 53, 1010
BstZI CGGCCG 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 1151
BsuRI GGCC 7 cut(s) 212, 248, 527, 646, 824, 1312, 1544
BtgI CCRYGG 1 cut(s) 833
BtsCI GGATG 3 cut(s) 643, 825, 926
Cac8I GCNNGC 6 cut(s) 192, 393, 426, 453, 952, 1096
CaiI CAGNNNCTG 2 cut(s) 173, 1262
CciNI GCGGCCGC 1 cut(s) 246
CfoI GCGC 3 cut(s) 361, 370, 554
Cfr13I GGNCC 1 cut(s) 823
CseI GACGC 2 cut(s) 86, 1122
Csp6I GTAC 1 cut(s) 1521
CviAII CATG 7 cut(s) 191, 287, 506, 834, 1252, 1515, 1532
CviQI GTAC 1 cut(s) 1521
DdeI CTNAG 4 cut(s) 440, 1151, 1524, 1568
DpnI GATC 8 cut(s) 55, 78, 486, 943, 1012, 1351, 1386, 1477
DpnII GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
DraIII CACNNNGTG 1 cut(s) 415
EaeI YGGCCR 2 cut(s) 210, 246
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 777, 786, 847
EarI CTCTTC 3 cut(s) 777, 786, 847
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 3 cut(s) 63, 833, 1272
Eco147I AGGCCT 3 cut(s) 646, 1312, 1544
Eco24I GRGCYC 3 cut(s) 20, 764, 1100
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 1151
Eco88I CYCGRG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 1281
EcoT14I CCWWGG 3 cut(s) 63, 833, 1272
EcoT38I GRGCYC 3 cut(s) 20, 764, 1100
ErhI CCWWGG 3 cut(s) 63, 833, 1272
Esp3I CGTCTC 1 cut(s) 1140
FaeI CATG 7 cut(s) 194, 290, 509, 837, 1255, 1518, 1535
FatI CATG 7 cut(s) 190, 286, 505, 833, 1251, 1514, 1531
FbaI TGATCA 1 cut(s) 484
FokI GGATG 3 cut(s) 650, 832, 913
FriOI GRGCYC 3 cut(s) 20, 764, 1100
FspBI CTAG 6 cut(s) 495, 606, 987, 1146, 1209, 1215
GlaI GCGC 3 cut(s) 360, 369, 553
HaeII RGCGCY 2 cut(s) 362, 555
HaeIII GGCC 7 cut(s) 212, 248, 527, 646, 824, 1312, 1544
HgaI GACGC 2 cut(s) 86, 1122
HhaI GCGC 3 cut(s) 361, 370, 554
Hin1II CATG 7 cut(s) 194, 290, 509, 837, 1255, 1518, 1535
Hin6I GCGC 3 cut(s) 359, 368, 552
HinP1I GCGC 3 cut(s) 359, 368, 552
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 393, 714
HinfI GANTC 5 cut(s) 436, 560, 1265, 1447, 1528
HphI GGTGA 6 cut(s) 412, 984, 1047, 1366, 1480, 1550
Hpy166II GTNNAC 4 cut(s) 30, 992, 1186, 1298
Hpy188I TCNGA 6 cut(s) 53, 327, 489, 586, 938, 1452
Hpy188III TCNNGA 7 cut(s) 112, 134, 197, 482, 575, 606, 1382
Hpy8I GTNNAC 4 cut(s) 30, 992, 1186, 1298
Hpy99I CGWCG 2 cut(s) 102, 257
HpyAV CCTTC 5 cut(s) 4, 503, 1323, 1560, 1566
HpyCH4III ACNGT 1 cut(s) 889
HpyF3I CTNAG 4 cut(s) 440, 1151, 1524, 1568
Hsp92II CATG 7 cut(s) 194, 290, 509, 837, 1255, 1518, 1535
HspAI GCGC 3 cut(s) 359, 368, 552
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
LguI GCTCTTC 2 cut(s) 777, 847
LmnI GCTCC 7 cut(s) 23, 759, 1130, 1292, 1330, 1384, 1492
LpnPI CCDG 9 cut(s) 97, 304, 427, 443, 1163, 1312, 1335, 1389, 1404
MaeI CTAG 6 cut(s) 495, 606, 987, 1146, 1209, 1215
MaeIII GTNAC 2 cut(s) 341, 1562
MalI GATC 8 cut(s) 55, 78, 486, 943, 1012, 1351, 1386, 1477
MboI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
MflI RGATCY 2 cut(s) 53, 1010
MhlI GDGCHC 5 cut(s) 20, 764, 1100, 1188, 1300
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 5 cut(s) 124, 931, 1159, 1246, 1281
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 3 cut(s) 430, 1456, 1537
MmeI TCCRAC 3 cut(s) 1327, 1381, 1470
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 856
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 128, 372, 1458
MslI CAYNNNNRTG 1 cut(s) 1536
Msp20I TGGCCA 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 952
MvnI CGCG 1 cut(s) 565
NcoI CCATGG 1 cut(s) 833
NdeII GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
NlaIII CATG 7 cut(s) 194, 290, 509, 837, 1255, 1518, 1535
NlaIV GGNNCC 3 cut(s) 19, 761, 825
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 1562
NotI GCGGCCGC 1 cut(s) 246
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PceI AGGCCT 3 cut(s) 646, 1312, 1544
PciSI GCTCTTC 2 cut(s) 777, 847
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 2 cut(s) 560, 1265
PleI GAGTC 3 cut(s) 430, 1455, 1536
PpsI GAGTC 3 cut(s) 430, 1455, 1536
PspN4I GGNNCC 3 cut(s) 19, 761, 825
PspPI GGNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 173, 1262
PsuI RGATCY 2 cut(s) 53, 1010
RsaI GTAC 1 cut(s) 1522
RsaNI GTAC 1 cut(s) 1521
RseI CAYNNNNRTG 1 cut(s) 1536
SapI GCTCTTC 2 cut(s) 777, 847
SaqAI TTAA 3 cut(s) 128, 372, 1458
Sau3AI GATC 8 cut(s) 53, 76, 484, 941, 1010, 1349, 1384, 1475
Sau96I GGNCC 1 cut(s) 823
SchI GAGTC 3 cut(s) 430, 1456, 1537
SduI GDGCHC 5 cut(s) 20, 764, 1100, 1188, 1300
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 1536
SmlI CTYRAG 2 cut(s) 240, 1441
SmoI CTYRAG 2 cut(s) 240, 1441
SpeI ACTAGT 1 cut(s) 1214
SphI GCATGC 1 cut(s) 194
Sse9I AATT 5 cut(s) 124, 931, 1159, 1246, 1281
SseBI AGGCCT 3 cut(s) 646, 1312, 1544
SsiI CCGC 8 cut(s) 245, 249, 330, 565, 868, 1069, 1087, 1221
SspMI CTAG 6 cut(s) 495, 606, 987, 1146, 1209, 1215
StuI AGGCCT 3 cut(s) 646, 1312, 1544
StyI CCWWGG 3 cut(s) 63, 833, 1272
TaaI ACNGT 1 cut(s) 889
TaqI TCGA 6 cut(s) 255, 463, 897, 944, 1279, 1316
TaqII GACCGA 2 cut(s) 603, 1134
TasI AATT 5 cut(s) 124, 931, 1159, 1246, 1281
TatI WGTACW 1 cut(s) 1520
TauI GCSGC 4 cut(s) 248, 251, 1071, 1224
TfiI GAWTC 2 cut(s) 560, 1265
Tru1I TTAA 3 cut(s) 128, 372, 1458
Tru9I TTAA 3 cut(s) 128, 372, 1458
TseFI GTSAC 1 cut(s) 1562
Tsp45I GTSAC 1 cut(s) 1562
TspDTI ATGAA 5 cut(s) 87, 522, 654, 716, 1503
VneI GTGCAC 2 cut(s) 1184, 1296
XapI RAATTY 2 cut(s) 124, 1281
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 6 cut(s) 495, 606, 987, 1146, 1209, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.