Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001398

Physical Location & Seq

Genomic Coordinates Forward (+)

24618227 .. 24618913

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1170800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGGAAGAAAATAGGCACTTCCTGGTTGACTGCTGTCAAAAGAGCTTTCAGATCTCCCACTAAAGACTACGAAGATCAAAAGAAAAGAGAGAAGCGCAAGTGGATTTTCAGAAAACCCACAAATTTCAACCAACAAGAAACCGTGACCCAAGAAGCAGTTGCGGAGCAAAAGCATGTTTCAGCAGCTGTAGAGCAAAAACACGTGTTTGCTATGGCGGAGGCTACGGCGGAAGCGGCAATGGCTACTGCCTATGCAGCCGCTAAGGTAGCTTGGCTGACTAGGCCTTCTAATCATGCTAGAGAACACTACTACGCCATTGTTATCCAGACAGCTTTCAGAGGATACTTAGCAAGAAGGGCGCTTTGTGCGCTTAAAGGGCTTATGAAGTTGAAGGCCTTGGTGATAGGCCACAATGTAAGGAAGCAAGCAAAGATGACGCTTAAGTGCATGCAGGCTATGGTTTGGGTGCAGGCTCGGGTGCTCGATCAGCTCACCAGGCTTTCTCACATAGGCAGCAGACAGTCTGCGTTTAGTGACACCACTAGTAGCGTTTGGGAATCACGTTATCTTCAAGACATTTCAGATAGGAAATCCATGTTACCGGATTTCGTGGCCCATCATCTCAAAAGCAAGAAAAGCAAGCACTGTCAGAAAAGGAATATAGAAAGCAAAAGCAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

229

Amino Acids

26.09

Weight (kDa)

10.19

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01110 AT1G01110 AT4G00820
fragaria_vesca	FvH4_5g10710 FvH4_7g17520 FvH4_7g17520 FvH4_7g17520 FvH4_7g32790
malus_domestica	MD01G1087900.v1.1 MD01G1227500.v1.1 MD06G1121100.v1.1 MD07G1158100.v1.1 MD07G1170800.v1.1 MD07G1297900.v1.1 MD14G1137700.v1.1
prunus_persica	Prupe.2G196500_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.5G131700_v2.0.a1
pyrus_communis	pycom01g11180 pycom07g15460 pycom07g27030 pycom14g11290
rosa_chinensis	RchiOBHm_Chr1g0360961 RchiOBHm_Chr1g0382751 RchiOBHm_Chr7g0187421
rosa_laevigata	RLG00000004782 RLG00000026164 RLG00000027766
rosa_multiflora	Rmu_co8094202.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267450 Rroxscaffold_4G00277940 Rroxscaffold_4G00295660
rosa_rugosa	Rorug01G0283900 Rorug01G0284000 Rorug01G0435500 Rorug06G0481500
rosa_samantha	Rh1AG295200 Rh1AG460700 Rh1BG260000 Rh1BG417500 Rh1CG277400 Rh1CG431100 Rh1DG290000 Rh1DG449700 Rh7AG086000 Rh7BG087500 Rh7CG086900 Rh7DG088500
rosa_wichuraiana	Rw1G026120 Rw1G041090 Rw7G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	164, 218, 230, 236, 261
AcsI	RAATTY	1 cut(s)	124
AcvI	CACGTG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	2 cut(s)	202, 204
AgsI	TTSAA	3 cut(s)	130, 394, 575
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	23, 497
AluBI	AGCT	5 cut(s)	47, 188, 272, 335, 493
AluI	AGCT	5 cut(s)	47, 188, 272, 335, 493
Alw21I	GWGCWC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	4 cut(s)	284, 396, 409, 615
ApeKI	GCWGC	3 cut(s)	185, 257, 516
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	3 cut(s)	99, 364, 373
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	415, 487
AvaI	CYCGRG	1 cut(s)	477
BbrPI	CACGTG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	197, 269, 528
BccI	CCATC	1 cut(s)	627
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	25, 499
BciVI	GTATCC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	3 cut(s)	282, 300, 546
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	5 cut(s)	186, 237, 258, 261, 517
BlsI	GCNGC	5 cut(s)	187, 238, 259, 262, 518
Bme1390I	CCNGG	2 cut(s)	25, 499
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	25, 499
BoxI	GACNNNNGTC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	604
Bse3DI	GCAATG	2 cut(s)	246, 685
BseBI	CCWGG	2 cut(s)	25, 499
BseDI	CCNNGG	1 cut(s)	399
BseMI	GCAATG	2 cut(s)	246, 685
BseXI	GCAGC	3 cut(s)	197, 269, 528
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	4 cut(s)	286, 398, 411, 617
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	605
BsnI	GGCC	4 cut(s)	286, 398, 411, 617
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	53, 76, 487
BspACI	CCGC	5 cut(s)	164, 218, 230, 236, 261
BspANI	GGCC	4 cut(s)	286, 398, 411, 617
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	246, 685
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	53, 76, 487
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	25, 499
Bst4CI	ACNGT	3 cut(s)	145, 525, 650
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	5 cut(s)	429, 452, 456, 474, 644
BstDEI	CTNAG	2 cut(s)	264, 349
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	3 cut(s)	99, 364, 373
BstKTI	GATC	3 cut(s)	56, 79, 490
BstMBI	GATC	3 cut(s)	53, 76, 487
BstNI	CCWGG	2 cut(s)	25, 499
BstNSI	RCATGY	2 cut(s)	179, 454
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	23, 497
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	197, 269, 528
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	286, 398, 411, 617
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	5 cut(s)	429, 452, 456, 474, 644
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	3 cut(s)	99, 364, 373
Cfr13I	GGNCC	1 cut(s)	616
CseI	GACGC	1 cut(s)	448
CviAII	CATG	4 cut(s)	176, 296, 451, 598
DdeI	CTNAG	2 cut(s)	264, 349
DpnI	GATC	3 cut(s)	55, 78, 489
DpnII	GATC	3 cut(s)	53, 76, 487
EciI	GGCGGA	2 cut(s)	233, 245
Eco130I	CCWWGG	1 cut(s)	399
Eco147I	AGGCCT	2 cut(s)	286, 398
Eco72I	CACGTG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	23, 497
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	4 cut(s)	179, 299, 454, 601
FatI	CATG	4 cut(s)	175, 295, 450, 597
Fnu4HI	GCNGC	5 cut(s)	186, 237, 258, 261, 517
Fsp4HI	GCNGC	5 cut(s)	186, 237, 258, 261, 517
FspBI	CTAG	3 cut(s)	282, 300, 546
GlaI	GCGC	3 cut(s)	98, 363, 372
GluI	GCNGC	5 cut(s)	186, 237, 258, 261, 517
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	4 cut(s)	286, 398, 411, 617
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	3 cut(s)	99, 364, 373
Hin1II	CATG	4 cut(s)	179, 299, 454, 601
Hin6I	GCGC	3 cut(s)	97, 362, 371
HinP1I	GCGC	3 cut(s)	97, 362, 371
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	415, 487
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	5 cut(s)	53, 113, 341, 586, 654
Hpy188III	TCNNGA	2 cut(s)	328, 575
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	3 cut(s)	297, 351, 388
HpyCH4III	ACNGT	3 cut(s)	145, 525, 650
HpyCH4IV	ACGT	2 cut(s)	204, 565
HpyCH4V	TGCA	4 cut(s)	257, 450, 454, 472
HpyF3I	CTNAG	2 cut(s)	264, 349
HpySE526I	ACGT	2 cut(s)	204, 565
Hsp92II	CATG	4 cut(s)	179, 299, 454, 601
HspAI	GCGC	3 cut(s)	97, 362, 371
Kzo9I	GATC	3 cut(s)	53, 76, 487
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	10, 37, 341, 440, 458, 484, 511, 618
Lsp1109I	GCAGC	3 cut(s)	197, 269, 528
MaeI	CTAG	3 cut(s)	282, 300, 546
MaeII	ACGT	2 cut(s)	204, 565
MaeIII	GTNAC	3 cut(s)	145, 536, 600
MalI	GATC	3 cut(s)	55, 78, 489
MboI	GATC	3 cut(s)	53, 76, 487
MboII	GAAGA	3 cut(s)	19, 86, 563
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	1 cut(s)	124
MnlI	CCTC	2 cut(s)	214, 335
MseI	TTAA	2 cut(s)	375, 444
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	25, 499
MvaI	CCWGG	2 cut(s)	25, 499
NdeII	GATC	3 cut(s)	53, 76, 487
NlaIII	CATG	4 cut(s)	179, 299, 454, 601
NmuCI	GTSAC	2 cut(s)	145, 536
NspI	RCATGY	2 cut(s)	179, 454
PaeI	GCATGC	1 cut(s)	454
PceI	AGGCCT	2 cut(s)	286, 398
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	5 cut(s)	187, 238, 259, 262, 518
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	23, 497
PspCI	CACGTG	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	23, 497
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	375, 444
SatI	GCNGC	5 cut(s)	186, 237, 258, 261, 517
Sau3AI	GATC	3 cut(s)	53, 76, 487
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	2 cut(s)	25, 499
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	8 cut(s)	49, 190, 207, 270, 274, 337, 495, 568
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	545
SphI	GCATGC	1 cut(s)	454
Sse9I	AATT	1 cut(s)	124
SseBI	AGGCCT	2 cut(s)	286, 398
SsiI	CCGC	5 cut(s)	164, 218, 230, 236, 261
SspMI	CTAG	3 cut(s)	282, 300, 546
StuI	AGGCCT	2 cut(s)	286, 398
StyD4I	CCNGG	2 cut(s)	23, 497
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	145, 525, 650
TaiI	ACGT	2 cut(s)	207, 568
TaqI	TCGA	1 cut(s)	486
TasI	AATT	1 cut(s)	124
TauI	GCSGC	2 cut(s)	239, 263
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	375, 444
Tru9I	TTAA	2 cut(s)	375, 444
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	2 cut(s)	145, 536
TseI	GCWGC	3 cut(s)	185, 257, 516
Tsp45I	GTSAC	2 cut(s)	145, 536
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	653
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	2 cut(s)	179, 454
XspI	CTAG	3 cut(s)	282, 300, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.