Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

4061363 .. 4063549

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGAAGCTCTACAGAAAAGGAACCGTACACCCGTCGCCGCCGCAGATAAAATCCAACGACCACCTTCTTACTCTTCTTCCCGTCGCTATTTTCTCACTAGCGGCGGTTCTCTCACCGGAAGACCGTGAAGTTTTAGCCTATCTCATATCAACCGCATCTTACTCCGGCGAGCGAAACCCTACCTCTCGCCTGAATAAGACCAAAGCCCACAAAAAAGCCCTTTTCGACAATCACTCGCCTCTTTTCCACTGTGACTGCTTTAGCTGCTACACGAGTTACTGGGTTAGATGGGACTCGTCACCGAGTCGGCAGCTTATTCATGAAATCATCGATGCCTTCGAAGATAGCTTGGAGAAGAACAAGAACAAGAAAAAGAACGTTACTGGTAAGAAAGATAGAAGAAAGCGTTCAGGGAAGTCTTCTTCACTTCTTGCTAGTTCTAGCTTTAGTACGGATGACTCAGAGATTCCGAGTCGACTCGGTGAGTCAGTTGTGAATTCGTGTCCGTGTACGAGTTCAAGCGAGTTGACTCAAGATGGAGGTGGTTGCAGCGGCGGTTTGGAACCAATGGAGTTTTTTTGTGCCGGAGACGCTTGTGAGAAGGTGGAGGAGGAGAAGGGAACCGTGAGGAGATTTGTGAGTTTTATTGGTGAGAAAGTTTTTGGTGTTTGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.05

Weight (kDa)

8.57

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	478
AciI	CCGC	7 cut(s)	41, 44, 104, 107, 156, 555, 558
AclI	AACGTT	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	3 cut(s)	30, 454, 514
AgsI	TTSAA	1 cut(s)	522
AluBI	AGCT	5 cut(s)	10, 267, 316, 351, 447
AluI	AGCT	5 cut(s)	10, 267, 316, 351, 447
Alw26I	GTCTC	1 cut(s)	585
ApeKI	GCWGC	3 cut(s)	267, 313, 552
ApoI	RAATTY	1 cut(s)	499
Asp700I	GAANNNNTTC	1 cut(s)	409
AsuHPI	GGTGA	4 cut(s)	108, 294, 497, 665
AsuII	TTCGAA	1 cut(s)	342
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	129, 414
BbvI	GCAGC	3 cut(s)	254, 325, 564
BccI	CCATC	2 cut(s)	285, 533
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	3 cut(s)	101, 438, 444
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	7 cut(s)	41, 44, 105, 268, 314, 553, 556
BlsI	GCNGC	7 cut(s)	42, 45, 106, 269, 315, 554, 557
BmiI	GGNNCC	3 cut(s)	25, 567, 625
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	167, 325
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	129, 414
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	287, 391
BseCI	ATCGAT	1 cut(s)	333
BseGI	GGATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	287, 391
BseRI	GAGGAG	3 cut(s)	626, 629, 646
BseXI	GCAGC	3 cut(s)	254, 325, 564
BshVI	ATCGAT	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	119, 168, 588
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	585
BsmBI	CGTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	342
BspACI	CCGC	7 cut(s)	41, 44, 104, 107, 156, 555, 558
BspCNI	CTCAG	1 cut(s)	476
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	25, 567, 625
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	287, 391
BssSI	CACGAG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	4 cut(s)	28, 128, 254, 628
Bst6I	CTCTTC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	585
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 593
BstSFI	CTRYAG	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	254, 325, 564
BstV2I	GAAGAC	2 cut(s)	129, 414
Bsu15I	ATCGAT	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	3 cut(s)	29, 453, 513
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	8 cut(s)	10, 140, 209, 221, 267, 316, 351, 447
CviKI_1	RGCY	8 cut(s)	10, 140, 209, 221, 267, 316, 351, 447
CviQI	GTAC	3 cut(s)	29, 453, 513
DdeI	CTNAG	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	1 cut(s)	326
FaiI	YATR	2 cut(s)	149, 324
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	7 cut(s)	41, 44, 105, 268, 314, 553, 556
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	7 cut(s)	41, 44, 105, 268, 314, 553, 556
FspBI	CTAG	3 cut(s)	101, 438, 444
GluI	GCNGC	7 cut(s)	41, 44, 105, 268, 314, 553, 556
HapII	CCGG	3 cut(s)	119, 168, 588
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	1 cut(s)	326
HincII	GTYRAC	2 cut(s)	479, 531
HindII	GTYRAC	2 cut(s)	479, 531
HinfI	GANTC	8 cut(s)	296, 307, 461, 469, 475, 480, 488, 532
HpaII	CCGG	3 cut(s)	119, 168, 588
HphI	GGTGA	4 cut(s)	108, 294, 497, 665
Hpy166II	GTNNAC	4 cut(s)	31, 479, 513, 531
Hpy188I	TCNGA	2 cut(s)	466, 474
Hpy188III	TCNNGA	2 cut(s)	323, 536
Hpy8I	GTNNAC	4 cut(s)	31, 479, 513, 531
Hpy99I	CGWCG	2 cut(s)	40, 89
HpyAV	CCTTC	4 cut(s)	77, 349, 598, 613
HpyCH4III	ACNGT	4 cut(s)	28, 128, 254, 628
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 593
HpyF3I	CTNAG	1 cut(s)	463
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	326
LpnPI	CCDG	7 cut(s)	132, 181, 206, 268, 372, 399, 601
Lsp1109I	GCAGC	3 cut(s)	254, 325, 564
LweI	GCATC	2 cut(s)	167, 325
MaeI	CTAG	3 cut(s)	101, 438, 444
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	254, 278, 300, 382
MboII	GAAGA	9 cut(s)	16, 68, 71, 134, 356, 370, 414, 414, 417
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	7 cut(s)	290, 316, 455, 474, 484, 497, 526
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	196, 252, 536, 604, 607, 624
MroXI	GAANNNNTTC	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	555
MspI	CCGG	3 cut(s)	119, 168, 588
MwoI	GCNNNNNNNGC	2 cut(s)	267, 593
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	3 cut(s)	25, 567, 625
NmuCI	GTSAC	2 cut(s)	254, 300
NspV	TTCGAA	1 cut(s)	342
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	7 cut(s)	42, 45, 106, 269, 315, 554, 557
PleI	GAGTC	7 cut(s)	290, 315, 455, 474, 483, 496, 526
PpsI	GAGTC	7 cut(s)	290, 315, 455, 474, 483, 496, 526
Psp1406I	AACGTT	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	25, 567, 625
RsaI	GTAC	3 cut(s)	30, 454, 514
RsaNI	GTAC	3 cut(s)	29, 453, 513
SalI	GTCGAC	1 cut(s)	477
SatI	GCNGC	7 cut(s)	41, 44, 105, 268, 314, 553, 556
SchI	GAGTC	7 cut(s)	290, 316, 455, 474, 484, 497, 526
SfaNI	GCATC	2 cut(s)	167, 325
SfcI	CTRYAG	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	1 cut(s)	499
SsiI	CCGC	7 cut(s)	41, 44, 104, 107, 156, 555, 558
SspMI	CTAG	3 cut(s)	101, 438, 444
TaaI	ACNGT	4 cut(s)	28, 128, 254, 628
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	228, 333, 342, 478
TasI	AATT	1 cut(s)	499
TauI	GCSGC	4 cut(s)	43, 46, 107, 558
TfiI	GAWTC	1 cut(s)	469
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	254, 300
TseI	GCWGC	3 cut(s)	267, 313, 552
Tsp45I	GTSAC	2 cut(s)	254, 300
TspDTI	ATGAA	3 cut(s)	17, 311, 339
TspGWI	ACGGA	2 cut(s)	470, 498
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	3 cut(s)	101, 438, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.