Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

556416 .. 557404

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGAAGCTGTACCGCAGAGGCACGGTTCATCCGTCGCCGCCAATCGTCTCCGACCACCTGTCCTTCCTTCCCGCCACCATCCTCGCCCTCGCGGCCGCCCTGTCCCTCGAAGACAGGGAGGTCCTTGCTTACCTCATCTCATGCTCCAACACTAACAACAACAACAACAACAACAACTTAACAGCCTCACCTTCCTCACGTAAGACCACAACCGCCAACAACAACAGAAAGAGTTCCGCCGCAAAAGGAGGCGGTGGAAGCGGCGGCGGAGACCACCCGGCCAGGTTCAACTGCAGCTGCTTCAGATGCTACACGAGTTACTGGGTCAGATGGGACGAGTCCCCGAATCGAGAATTGATCCATGAGATCATCGATGCTTTTGAATATGACTTACTTTCATCTCAGACTAAAACGGCAGGGTCCAAGTATGGCAAGAAAGACAAGAGGCAGAATAACAAGAGAGGTAAAGGGCAGGGTCAAGGATCCGACTTGAGTCTGAATAAAAAGAAGGATCATCAGCTGGTGAAGACTAACATGGTGGAGGAGATCACTAATAGTAGCAATAGTACTGATCACTCTGGTGATCTTGATGGCGATGAGGAAAGCAAAGGATCAGTGAGAAGATTTGTGAGCTTTCTTGGTGAGAGGATATGGGGTGGTGTCTGGAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.79

Weight (kDa)

9.24

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	95
AclWI	GGATC	5 cut(s)	355, 480, 493, 522, 622
AcoI	YGGCCR	2 cut(s)	96, 282
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	14, 571
AgsI	TTSAA	2 cut(s)	292, 386
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	582
AluBI	AGCT	4 cut(s)	10, 300, 523, 636
AluI	AGCT	4 cut(s)	10, 300, 523, 636
Alw26I	GTCTC	2 cut(s)	55, 267
AlwI	GGATC	5 cut(s)	355, 480, 493, 522, 622
AoxI	GGCC	2 cut(s)	96, 282
ApeKI	GCWGC	2 cut(s)	297, 300
Asp700I	GAANNNNTTC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	124, 423
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	183, 538, 596, 656
AvaII	GGWCC	2 cut(s)	124, 423
BamHI	GGATCC	1 cut(s)	485
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	120, 536
BbvI	GCAGC	2 cut(s)	287, 309
BccI	CCATC	3 cut(s)	89, 327, 587
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	55, 267
BfmI	CTRYAG	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	8 cut(s)	41, 96, 99, 243, 265, 268, 298, 301
BlsI	GCNGC	8 cut(s)	42, 97, 100, 244, 266, 269, 299, 302
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	2 cut(s)	281, 286
Bme18I	GGWCC	2 cut(s)	124, 423
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	124, 423
BmiI	GGNNCC	3 cut(s)	424, 487, 671
BmrFI	CCNGG	2 cut(s)	281, 286
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	299, 367
BmuI	ACTGGG	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	120, 536
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	329, 673
BseBI	CCWGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	375
BseGI	GGATG	2 cut(s)	31, 81
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	329, 673
BseRI	GAGGAG	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	287, 309
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 284
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	3 cut(s)	91, 328, 350
BsmAI	GTCTC	2 cut(s)	55, 267
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	91, 328, 350
BsnI	GGCC	2 cut(s)	98, 284
Bso31I	GGTCTC	1 cut(s)	267
Bsp143I	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
BspANI	GGCC	2 cut(s)	98, 284
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	424, 487, 671
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	5 cut(s)	355, 480, 493, 522, 622
BspTNI	GGTCTC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	329, 673
BssMI	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	31, 81
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	8 cut(s)	363, 372, 488, 517, 552, 577, 589, 617
BstMAI	GTCTC	2 cut(s)	55, 267
BstMBI	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 261, 309
BstNI	CCWGG	1 cut(s)	286
BstPAI	GACNNNNGTC	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	279, 284
BstSFI	CTRYAG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	287, 309
BstV2I	GAAGAC	2 cut(s)	120, 536
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	98, 284
BsuTUI	ATCGAT	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	31, 81
BtsIMutI	CAGTG	1 cut(s)	624
CciNI	GCGGCCGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	124, 423
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	13, 570
CviAII	CATG	3 cut(s)	144, 365, 538
CviJI	RGCY	8 cut(s)	10, 98, 188, 284, 300, 523, 636, 672
CviKI_1	RGCY	8 cut(s)	10, 98, 188, 284, 300, 523, 636, 672
CviQI	GTAC	2 cut(s)	13, 570
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	8 cut(s)	362, 371, 487, 516, 551, 576, 588, 616
DpnII	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	96, 282
EagI	CGGCCG	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	229, 285
EclXI	CGGCCG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	124, 423
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	147, 368, 541
FaiI	YATR	6 cut(s)	145, 366, 390, 432, 539, 655
FaqI	GGGAC	3 cut(s)	91, 328, 350
FatI	CATG	3 cut(s)	143, 364, 537
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	8 cut(s)	41, 96, 99, 243, 265, 268, 298, 301
FokI	GGATG	2 cut(s)	18, 68
Fsp4HI	GCNGC	8 cut(s)	41, 96, 99, 243, 265, 268, 298, 301
GluI	GCNGC	8 cut(s)	41, 96, 99, 243, 265, 268, 298, 301
HaeIII	GGCC	2 cut(s)	98, 284
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	3 cut(s)	147, 368, 541
HinfI	GANTC	3 cut(s)	341, 349, 496
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	4 cut(s)	183, 538, 596, 656
Hpy188I	TCNGA	6 cut(s)	55, 308, 332, 408, 490, 501
Hpy188III	TCNNGA	3 cut(s)	353, 590, 667
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	76, 80, 204, 505
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 261, 309
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	147, 368, 541
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
LmnI	GCTCC	2 cut(s)	152, 669
Lsp1109I	GCAGC	2 cut(s)	287, 309
LweI	GCATC	2 cut(s)	299, 367
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	8 cut(s)	362, 371, 487, 516, 551, 576, 588, 616
MboI	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
MboII	GAAGA	4 cut(s)	16, 125, 541, 636
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	350, 505
MmeI	TCCRAC	3 cut(s)	78, 174, 513
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	300, 523
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	281, 286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	95, 261, 309
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
NlaIII	CATG	3 cut(s)	147, 368, 541
NlaIV	GGNNCC	3 cut(s)	424, 487, 671
NotI	GCGGCCGC	1 cut(s)	96
OliI	CACNNNNGTG	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	8 cut(s)	42, 97, 100, 244, 266, 269, 299, 302
PleI	GAGTC	2 cut(s)	349, 504
PpsI	GAGTC	2 cut(s)	349, 504
Ppu21I	YACGTR	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	124
PshAI	GACNNNNGTC	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	424, 487, 671
PspPI	GGNCC	2 cut(s)	124, 423
PspPPI	RGGWCCY	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	485
PvuII	CAGCTG	2 cut(s)	300, 523
RsaI	GTAC	2 cut(s)	14, 571
RsaNI	GTAC	2 cut(s)	13, 570
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	8 cut(s)	41, 96, 99, 243, 265, 268, 298, 301
Sau3AI	GATC	8 cut(s)	360, 369, 485, 514, 549, 574, 586, 614
Sau96I	GGNCC	2 cut(s)	124, 423
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	2 cut(s)	350, 505
ScrFI	CCNGG	2 cut(s)	281, 286
SfaNI	GCATC	2 cut(s)	299, 367
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	124, 423
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	279, 284
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	111, 352, 375
TasI	AATT	1 cut(s)	356
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	6 cut(s)	43, 98, 101, 245, 267, 270
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	624
TseI	GCWGC	2 cut(s)	297, 300
TspDTI	ATGAA	3 cut(s)	17, 20, 390
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	624
VpaK11BI	GGWCC	2 cut(s)	124, 423
XmnI	GAANNNNTTC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.