Rroxscaffold_2G00091970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003154
Physical Location & Seq
Reverse (-)
13528704 .. 13529866
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091970.1

Sequence Viewer

Length: 597 bp
ATGAAGAAGCTCTACAACAAGAAAGGCAAGGTCCACCCGTCGCCACCGCCTTCGACACCCGACCCGTTCGCCCTGCTTCCGGCCACTATTTTGACTCTGACCACAGCTCTCTCCGTCCAGGACCGAGAGGTCCTCGCCTATCTCATCTCCTACACCAACAACAACAACAACAATTCGACCAGCATCAACACCAACAAGGCCAACGATGCCCATAAAGCTGGAAACGATCACCCTGATCCTCCGATGTCCCAGTGCGACTGCTTTAGGTGCTACAAGAGCTTCTGGGCACGATGGGATGCTTCCCCCAACCGGCAGCTCATACATGAAATCATCGAGGCGTACGAGGAAAAGTTGGCTGAGAAGAAAAGGAGAAATCCCAAGGTGAAGAAAGTGAGGAAGAAGAAAATTGAGGAGGAAACCAAGGGTAATATTGATGATCTACCAGTCATGAAAGAGGAGCTGAGTAATAATCCAGAAGTGGATGTGGAAAACTGTGATGGTGATGAGGAAGGCTGTGAGGTTGAGGTTCAGAAAGGATCCTCCATAAGGAGGTTGGCGAGCTTCATTGGAGATAGGATTTGGGGTGTTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

6.9

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AciI CCGC 1 cut(s) 47
AclWI GGATC 3 cut(s) 230, 531, 544
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 4 cut(s) 79, 309, 546, 549
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 7 cut(s) 10, 107, 218, 279, 316, 460, 561
AluI AGCT 7 cut(s) 10, 107, 218, 279, 316, 460, 561
AlwI GGATC 3 cut(s) 230, 531, 544
AoxI GGCC 2 cut(s) 81, 198
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 3 cut(s) 31, 121, 130
AsuHPI GGTGA 3 cut(s) 221, 394, 512
AvaII GGWCC 3 cut(s) 31, 121, 130
BaeGI GKGCMC 1 cut(s) 289
BamHI GGATCC 1 cut(s) 536
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 285, 491
BciT130I CCWGG 1 cut(s) 119
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 3 cut(s) 31, 121, 130
BmgT120I GGNCC 3 cut(s) 31, 121, 130
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 192, 196, 286
BmuI ACTGGG 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BsaJI CCNNGG 2 cut(s) 378, 420
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 309, 546, 549
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 2 cut(s) 250, 443
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 378, 420
BseGI GGATG 2 cut(s) 301, 487
BseLI CCNNNNNNNGG 4 cut(s) 79, 309, 546, 549
BseMII CTCAG 2 cut(s) 348, 452
BseNI ACTGG 2 cut(s) 250, 443
BseRI GAGGAG 2 cut(s) 425, 470
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 83, 200
BsiSI CCGG 2 cut(s) 80, 310
BsiWI CGTACG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 4 cut(s) 79, 309, 546, 549
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 83, 200
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 4 cut(s) 226, 235, 436, 536
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 83, 200
BspCNI CTCAG 2 cut(s) 349, 453
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 538
BspPI GGATC 3 cut(s) 230, 531, 544
BsrFI RCCGGY 1 cut(s) 309
BsrI ACTGG 2 cut(s) 250, 443
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 378, 420
BssMI GATC 4 cut(s) 226, 235, 436, 536
BssT1I CCWWGG 2 cut(s) 378, 420
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 2 cut(s) 357, 461
BstENI CCTNNNNNAGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 301, 487
BstKTI GATC 4 cut(s) 229, 238, 439, 539
BstMBI GATC 4 cut(s) 226, 235, 436, 536
BstMWI GCNNNNNNNGC 4 cut(s) 206, 215, 267, 276
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 536
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 536
BsuRI GGCC 2 cut(s) 83, 200
BtsCI GGATG 2 cut(s) 301, 487
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 559
CciI TCATGA 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 31, 121, 130
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 323, 448
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 357, 461
DpnI GATC 4 cut(s) 228, 237, 438, 538
DpnII GATC 4 cut(s) 226, 235, 436, 536
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 378, 420
Eco47I GGWCC 3 cut(s) 31, 121, 130
EcoNI CCTNNNNNAGG 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 378, 420
ErhI CCWWGG 2 cut(s) 378, 420
FaeI CATG 2 cut(s) 326, 451
FaiI YATR 5 cut(s) 213, 320, 324, 449, 545
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 322, 447
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 308, 494
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 2 cut(s) 83, 200
HapII CCGG 2 cut(s) 80, 310
Hin1II CATG 2 cut(s) 326, 451
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 80, 310
HphI GGTGA 3 cut(s) 221, 394, 512
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 99, 243, 531
Hpy188III TCNNGA 2 cut(s) 448, 473
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 60, 503
HpyCH4III ACNGT 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 215, 267, 276
HpyF3I CTNAG 2 cut(s) 357, 461
Hsp92II CATG 2 cut(s) 326, 451
Kzo9I GATC 4 cut(s) 226, 235, 436, 536
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 3 cut(s) 192, 196, 286
MalI GATC 4 cut(s) 228, 237, 438, 538
MboI GATC 4 cut(s) 226, 235, 436, 536
MboII GAAGA 5 cut(s) 16, 373, 397, 409, 412
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 3 cut(s) 172, 405, 592
MlyI GAGTC 1 cut(s) 88
MspI CCGG 2 cut(s) 80, 310
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 206, 215, 267, 276
NdeII GATC 4 cut(s) 226, 235, 436, 536
NlaIII CATG 2 cut(s) 326, 451
NlaIV GGNNCC 1 cut(s) 538
PagI TCATGA 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 339
Pfl23II CGTACG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspLI CGTACG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 3 cut(s) 31, 121, 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 536
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 4 cut(s) 226, 235, 436, 536
Sau96I GGNCC 3 cut(s) 31, 121, 130
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 3 cut(s) 192, 196, 286
SinI GGWCC 3 cut(s) 31, 121, 130
Sse9I AATT 3 cut(s) 172, 405, 592
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 2 cut(s) 378, 420
TaaI ACNGT 1 cut(s) 494
TaqI TCGA 3 cut(s) 53, 176, 333
TaqII GACCGA 1 cut(s) 138
TasI AATT 3 cut(s) 172, 405, 592
TscAI CASTG 1 cut(s) 257
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 4 cut(s) 17, 339, 464, 553
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 3 cut(s) 31, 121, 130
XagI CCTNNNNNAGG 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.