Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

47225435 .. 47226100

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1356500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAAGAAGCTCTACCGAAGGGGCACGGTTCATCCGTCACCGCCAATCATATCAGACCACCTGGCCTTCCTTCCCGCCACCATCCTCACCCTGGCGTCGGCTCTGTCACCCGAGGATAGAGAAGTTCTGGCTTACCTCATCTCCTGTTCTAACAGCTCCGTTAACTTATCCTCTTCCTCCTCGTACGCTGCTCCACGTAAAAAGACAACCACCGCCGCCTCCAAAAAGACGGCAGCAGCAAAGGGCGTCATCGGCGGCGGTGGGGTCGGCGGGGACCACCCGGCTAGGTTTAACTGCAACTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCGAATCGCCAACTCATCCACGAGATCATCGATGCTTTCGAAGATGAGCTGCTGACTGAGAGCAAAGGATTTTCATCAAAGAGTAGTAGGAAAGAGAGGAGGAACAAGAGTAGGGTTAATAATGGCTCGGGTGAATTGAAGCGGTCAGAGTTGAGTGTGAAAAAGAAGGAGCTGGCTCAGTCTCACACGGCGGACCAAGAGGCCGGTGGCGGTGGCGGTGGCGGTGGCGGAGAGGTTGACGAGGAAGACTCGGAAAAAGGGTCAGTGAGAAGGTTTGTGGGCTTTCTTGGAGAGAGAATATGGGGTGTGTGGAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

23.95

Weight (kDa)

9.16

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	289
AcyI	GRCGYC	2 cut(s)	95, 246
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	91, 97
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	60, 90
AluBI	AGCT	4 cut(s)	10, 156, 394, 517
AluI	AGCT	4 cut(s)	10, 156, 394, 517
Alw26I	GTCTC	1 cut(s)	531
Ama87I	CYCGRG	2 cut(s)	110, 472
AoxI	GGCC	2 cut(s)	63, 546
ApeKI	GCWGC	4 cut(s)	188, 233, 236, 394
AspS9I	GGNCC	2 cut(s)	274, 538
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	30, 79, 99, 488
AsuII	TTCGAA	1 cut(s)	384
AvaI	CYCGRG	2 cut(s)	110, 472
AvaII	GGWCC	2 cut(s)	274, 538
BaeGI	GKGCMC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	316, 365
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	175, 245, 248, 381
BccI	CCATC	2 cut(s)	89, 327
BceAI	ACGGC	2 cut(s)	246, 549
BciT130I	CCWGG	2 cut(s)	62, 92
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	6 cut(s)	189, 216, 234, 237, 256, 395
BlsI	GCNGC	6 cut(s)	190, 217, 235, 238, 257, 396
Bme1390I	CCNGG	3 cut(s)	62, 92, 281
Bme18I	GGWCC	2 cut(s)	274, 538
BmeT110I	CYCGRG	2 cut(s)	110, 472
BmgT120I	GGNCC	2 cut(s)	274, 538
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	3 cut(s)	62, 92, 281
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu14I	TTCGAA	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	418
BsaHI	GRCGYC	2 cut(s)	95, 246
BsaJI	CCNNGG	2 cut(s)	90, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 97
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	62, 92
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	90, 111
BseGI	GGATG	3 cut(s)	31, 81, 360
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	91, 97
BseMII	CTCAG	2 cut(s)	393, 536
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	169, 457
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	175, 245, 248, 381
BshFI	GGCC	2 cut(s)	65, 548
BshVI	ATCGAT	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	110, 472
BsiSI	CCGG	2 cut(s)	281, 549
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	287, 350
BslI	CCNNNNNNNGG	2 cut(s)	91, 97
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	287, 350
BsnI	GGCC	2 cut(s)	65, 548
BsoBI	CYCGRG	2 cut(s)	110, 472
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	65, 548
BspCNI	CTCAG	2 cut(s)	394, 535
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	90, 111
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	2 cut(s)	95, 246
BssSI	CACGAG	2 cut(s)	316, 365
Bst2BI	CACGAG	2 cut(s)	316, 365
Bst2UI	CCWGG	2 cut(s)	62, 92
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	95, 246
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	402, 522
BstF5I	GGATG	3 cut(s)	31, 81, 360
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 309
BstNI	CCWGG	2 cut(s)	62, 92
BstSCI	CCNGG	3 cut(s)	60, 90, 279
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	4 cut(s)	175, 245, 248, 381
BstV2I	GAAGAC	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	65, 548
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	31, 81, 360
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	274, 538
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	2 cut(s)	84, 235
Csp6I	GTAC	1 cut(s)	184
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	402, 522
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	2 cut(s)	551, 588
Eco47I	GGWCC	2 cut(s)	274, 538
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	2 cut(s)	110, 472
EcoRII	CCWGG	2 cut(s)	60, 90
FaiI	YATR	2 cut(s)	50, 646
FaqI	GGGAC	2 cut(s)	287, 350
FauI	CCCGC	2 cut(s)	82, 263
Fnu4HI	GCNGC	6 cut(s)	189, 216, 234, 237, 256, 395
FokI	GGATG	3 cut(s)	18, 68, 347
Fsp4HI	GCNGC	6 cut(s)	189, 216, 234, 237, 256, 395
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	6 cut(s)	189, 216, 234, 237, 256, 395
HaeIII	GGCC	2 cut(s)	65, 548
HapII	CCGG	2 cut(s)	281, 549
HgaI	GACGC	2 cut(s)	84, 235
Hin1I	GRCGYC	2 cut(s)	95, 246
HincII	GTYRAC	2 cut(s)	163, 583
HindII	GTYRAC	2 cut(s)	163, 583
HinfI	GANTC	4 cut(s)	341, 349, 593, 658
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	281, 549
HphI	GGTGA	4 cut(s)	30, 79, 99, 488
Hpy166II	GTNNAC	2 cut(s)	163, 583
Hpy188I	TCNGA	4 cut(s)	55, 332, 493, 598
Hpy8I	GTNNAC	2 cut(s)	163, 583
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	5 cut(s)	12, 76, 80, 505, 609
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 309
HpyF3I	CTNAG	2 cut(s)	402, 522
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	2 cut(s)	95, 246
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	161, 196, 514
Lsp1109I	GCAGC	4 cut(s)	175, 245, 248, 381
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	36, 105, 320
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	4 cut(s)	16, 165, 398, 602
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	350, 587
MseI	TTAA	3 cut(s)	162, 291, 462
MspI	CCGG	2 cut(s)	281, 549
MspR9I	CCNGG	3 cut(s)	62, 92, 281
MvaI	CCWGG	2 cut(s)	62, 92
MwoI	GCNNNNNNNGC	2 cut(s)	252, 309
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	36, 105
NspV	TTCGAA	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 372, 381
PfeI	GAWTC	1 cut(s)	349
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	6 cut(s)	190, 217, 235, 238, 257, 396
PleI	GAGTC	2 cut(s)	349, 587
PpsI	GAGTC	2 cut(s)	349, 587
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	60, 90
PspGI	CCWGG	2 cut(s)	60, 90
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	274, 538
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	162, 291, 462
SatI	GCNGC	6 cut(s)	189, 216, 234, 237, 256, 395
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	2 cut(s)	274, 538
SchI	GAGTC	2 cut(s)	350, 587
ScrFI	CCNGG	3 cut(s)	62, 92, 281
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	2 cut(s)	274, 538
Sse9I	AATT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	60, 90, 279
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	375, 384
TasI	AATT	1 cut(s)	479
TauI	GCSGC	2 cut(s)	218, 258
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	162, 291, 462
Tru9I	TTAA	3 cut(s)	162, 291, 462
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	2 cut(s)	36, 105
TseI	GCWGC	4 cut(s)	188, 233, 236, 394
Tsp45I	GTSAC	2 cut(s)	36, 105
TspDTI	ATGAA	3 cut(s)	17, 20, 408
TspGWI	ACGGA	2 cut(s)	24, 148
TspRI	CASTG	1 cut(s)	615
VpaK11BI	GGWCC	2 cut(s)	274, 538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 548
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.