Rw5G001290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003154
Physical Location & Seq
Forward (+)
1057983 .. 1059346
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001290.1

Sequence Viewer

Length: 699 bp
ATGAAGAAGCTGTACCGCAGAGGCACGGTTCATCCGTCACCGCCAACAGTGTCCGACCACCTGTCCTTCCTTCCCGCTACCATCCTCGCCCTCGCGGCCGCCCTGTCCCTCGGGGACAGGGAGGTCCTGGCTTACCTCATCTCCTGCTCCAACACTAACAACGTCAACTTAACATCCTCACCCTCCTCACGTAAGACTACTAACACAACCGCCACCAACAGCAGCAACAAAAAGAGTTCCGCCGCCAAAAGGGGCTGCGGAAGCGGCGGCGGGGACCACCCGGCGCGGTTCAACTGCAGCTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCGAATCGAGAACTGATCCATGAGATCATCGATGCTTTTGAAGATGAGCTACTTTCATCTCAGTGTGCCAGTAGTAGTAGTAGTAGTAAAGCGGCTGGGTCGAAGTATGGTAAGAAGGACAAGAGGCACCATAACAAGAGAGGAAACAGTGGTAACGGGCCGAGTCAAGGATCGGAGTTGAGTCTGAAGAAGAAGGATCAGATGGTGAAGCCTAACATGGTGGAGGAGACTAATAGTAGTAGTAACAGTACTGACTCGGGTGATCTTGATGGTGATGAGGAAAGCAAGGGATCGGTGAGAAGATTTGTGAGCTTTCTTGGAGAGAGGATATGGGGTGGTGTCTGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.16

Weight (kDa)

9.12

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 471
AccII CGCG 2 cut(s) 95, 286
AclWI GGATC 4 cut(s) 355, 523, 549, 643
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 289, 551
AfaI GTAC 2 cut(s) 14, 595
AfiI CCNNNNNNNGG 2 cut(s) 249, 512
AgsI TTSAA 2 cut(s) 292, 386
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 10, 300, 394, 657
AluI AGCT 4 cut(s) 10, 300, 394, 657
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 4 cut(s) 355, 523, 549, 643
Ama87I CYCGRG 2 cut(s) 110, 601
AoxI GGCC 2 cut(s) 96, 503
ApeKI GCWGC 4 cut(s) 222, 255, 297, 300
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 124, 274, 503
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 6 cut(s) 30, 171, 562, 617, 629, 652
AvaI CYCGRG 2 cut(s) 110, 601
AvaII GGWCC 2 cut(s) 124, 274
BanI GGYRCC 1 cut(s) 471
BarI GAAGNNNNNNTAC 3 cut(s) 28, 378, 410
BauI CACGAG 1 cut(s) 316
BbvI GCAGC 4 cut(s) 234, 242, 287, 309
BccI CCATC 4 cut(s) 89, 327, 541, 608
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 2 cut(s) 128, 281
Bme18I GGWCC 2 cut(s) 124, 274
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 2 cut(s) 110, 601
BmgT120I GGNCC 3 cut(s) 124, 274, 503
BmiI GGNNCC 3 cut(s) 275, 473, 692
BmrFI CCNGG 2 cut(s) 128, 281
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 512
Bse1I ACTGG 3 cut(s) 329, 414, 694
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 31, 81, 173
BseLI CCNNNNNNNGG 2 cut(s) 249, 512
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 3 cut(s) 329, 414, 694
BseRI GAGGAG 2 cut(s) 175, 584
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 4 cut(s) 234, 242, 287, 309
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 2 cut(s) 95, 286
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 98, 505
BshNI GGYRCC 1 cut(s) 471
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 110, 601
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 4 cut(s) 91, 128, 287, 350
BslI CCNNNNNNNGG 2 cut(s) 249, 512
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 4 cut(s) 91, 128, 287, 350
BsnI GGCC 2 cut(s) 98, 505
BsoBI CYCGRG 2 cut(s) 110, 601
Bsp143I GATC 6 cut(s) 360, 369, 515, 541, 607, 635
BspANI GGCC 2 cut(s) 98, 505
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 2 cut(s) 95, 286
BspLI GGNNCC 3 cut(s) 275, 473, 692
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 4 cut(s) 355, 523, 549, 643
BspT107I GGYRCC 1 cut(s) 471
BsrI ACTGG 3 cut(s) 329, 414, 694
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 6 cut(s) 360, 369, 515, 541, 607, 635
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 28, 49, 494, 593
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 31, 81, 173
BstFNI CGCG 2 cut(s) 95, 286
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 6 cut(s) 363, 372, 518, 544, 610, 638
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 6 cut(s) 360, 369, 515, 541, 607, 635
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 279
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 2 cut(s) 95, 286
BstV1I GCAGC 4 cut(s) 234, 242, 287, 309
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 98, 505
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 3 cut(s) 31, 81, 173
BtsIMutI CAGTG 3 cut(s) 54, 413, 499
CciNI GCGGCCGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 124, 274, 503
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 2 cut(s) 13, 594
CviAII CATG 2 cut(s) 365, 562
CviQI GTAC 2 cut(s) 13, 594
DdeI CTNAG 1 cut(s) 405
DpnI GATC 6 cut(s) 362, 371, 517, 543, 609, 637
DpnII GATC 6 cut(s) 360, 369, 515, 541, 607, 635
DrdI GACNNNNNNGTC 1 cut(s) 122
DriI GACNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 124, 274
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 289, 551
Eco88I CYCGRG 2 cut(s) 110, 601
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 368, 565
FaiI YATR 5 cut(s) 366, 453, 477, 563, 676
FaqI GGGAC 4 cut(s) 91, 128, 287, 350
FatI CATG 2 cut(s) 364, 561
FauI CCCGC 2 cut(s) 82, 263
FokI GGATG 3 cut(s) 18, 68, 160
GlaI GCGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 98, 505
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 368, 565
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 5 cut(s) 341, 349, 508, 526, 599
HpaII CCGG 1 cut(s) 281
HphI GGTGA 6 cut(s) 30, 171, 562, 617, 629, 652
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 55, 332, 520, 531, 546
Hpy188III TCNNGA 3 cut(s) 353, 611, 688
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 76, 80, 454, 532
HpyCH4III ACNGT 4 cut(s) 28, 49, 494, 593
HpyCH4IV ACGT 2 cut(s) 162, 190
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 162, 190
Hsp92II CATG 2 cut(s) 368, 565
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 6 cut(s) 360, 369, 515, 541, 607, 635
LmnI GCTCC 2 cut(s) 152, 690
Lsp1109I GCAGC 4 cut(s) 234, 242, 287, 309
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 162, 190
MaeIII GTNAC 4 cut(s) 36, 320, 497, 587
MalI GATC 6 cut(s) 362, 371, 517, 543, 609, 637
MboI GATC 6 cut(s) 360, 369, 515, 541, 607, 635
MboII GAAGA 5 cut(s) 16, 398, 544, 547, 657
MlyI GAGTC 4 cut(s) 350, 517, 535, 593
MmeI TCCRAC 2 cut(s) 78, 174
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 128, 281
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 95, 286
MwoI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
NciI CCSGG 1 cut(s) 281
NdeII GATC 6 cut(s) 360, 369, 515, 541, 607, 635
NlaIII CATG 2 cut(s) 368, 565
NlaIV GGNNCC 3 cut(s) 275, 473, 692
NmeAIII GCCGAG 1 cut(s) 531
NmuCI GTSAC 1 cut(s) 36
NotI GCGGCCGC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 349
PleI GAGTC 4 cut(s) 349, 516, 534, 593
PpsI GAGTC 4 cut(s) 349, 516, 534, 593
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 275, 473, 692
PspPI GGNCC 3 cut(s) 124, 274, 503
PspPPI RGGWCCY 1 cut(s) 124
PstI CTGCAG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 14, 595
RsaNI GTAC 2 cut(s) 13, 594
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 170
Sau3AI GATC 6 cut(s) 360, 369, 515, 541, 607, 635
Sau96I GGNCC 3 cut(s) 124, 274, 503
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 4 cut(s) 350, 517, 535, 593
ScrFI CCNGG 2 cut(s) 128, 281
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 2 cut(s) 124, 274
SmiMI CAYNNNNRTG 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 126, 279
TaaI ACNGT 4 cut(s) 28, 49, 494, 593
TaiI ACGT 2 cut(s) 165, 193
TaqI TCGA 3 cut(s) 352, 375, 446
TatI WGTACW 1 cut(s) 593
TauI GCSGC 6 cut(s) 98, 101, 245, 267, 270, 440
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 3 cut(s) 54, 413, 499
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 4 cut(s) 222, 255, 297, 300
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 17, 20, 390
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 54, 413, 499
VpaK11BI GGWCC 2 cut(s) 124, 274
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.