Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

9278381 .. 9279142

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1108000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATAAGCTCTACAACAAGAAAGGCAAAGTTCACCCGTCACCTTCGCCGCCCTCCGTAGCCGACCCTCTGGCCCTTCTTCCGGCAACCGTCCTCGCCTTGGCCATATCCCTCTCCCCCGAAGACCAAGAGGTCTTGGCCTACCTCATCTCCTGCACCAAAAACTCAGGCGGTTGCGCAACGAACCAGCGTGGGCCTACTACTACTAAGTCCAATCGTGCACCGGCCACAGGGCCGTCGCAGGTAACATCCATAACTTGTATCGAGTCACACAACTCCAACGTGGATAACACATATGGCGGCCACAAGGCACACCAGAAGCACAACAGGGTTGGCGTCGAAGCTGGTGGGCCGCAGTCCCACCACCCTCCTACGTTCCAGTGCGACTGCTTCAGGTGCTATATGAGTTTTTGGGCACGGTGGGACGCTTCGCCGAACCGCCAGCTGATCCATGAAATCCTTGAGGCTTATGAGGAGAGGTTGGTGGAGAAGAAGAGGAGCAGAAACTCAAAGGTGAAGAAAGAGAGAAGGAAGGCTAACAAGAGCAGTGGTGATCATCTGGGATTTGGGGAATTAGGGCATGGGGACAAGAAGGAGGTGGAGGAGGGCCCACAAGTGGTGGACGCTGGTGTTGTTGCTGCTGAAGTGATAAGTGGTGGTGAGTCTGGTGATGATGAAGGTTGTGAGGTTGGAGTGGATAGGGGGACCATGAGGAGGCTGGTGAGTTCCATTGGGGACAAGATTTGGGGTCTTTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

27.45

Weight (kDa)

8.13

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	232
AciI	CCGC	5 cut(s)	50, 171, 300, 353, 439
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	3 cut(s)	102, 225, 301
AcuI	CTGAAG	2 cut(s)	376, 663
AcyI	GRCGYC	1 cut(s)	336
AfiI	CCNNNNNNNGG	5 cut(s)	82, 100, 230, 616, 714
AluBI	AGCT	3 cut(s)	10, 344, 445
AluI	AGCT	3 cut(s)	10, 344, 445
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	9 cut(s)	72, 102, 138, 194, 225, 233, 301, 350, 607
ApaI	GGGCCC	1 cut(s)	611
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	7 cut(s)	73, 194, 233, 350, 607, 608, 705
AsuHPI	GGTGA	7 cut(s)	26, 33, 526, 563, 671, 680, 733
AvaII	GGWCC	1 cut(s)	705
BaeGI	GKGCMC	3 cut(s)	223, 418, 611
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	625
BceAI	ACGGC	1 cut(s)	220
BclI	TGATCA	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	50, 301, 353, 639
BlsI	GCNGC	4 cut(s)	51, 302, 354, 640
Bme18I	GGWCC	1 cut(s)	705
BmgT120I	GGNCC	7 cut(s)	73, 194, 233, 350, 607, 608, 705
BmiI	GGNNCC	2 cut(s)	609, 706
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 100, 230, 616, 714
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	5 cut(s)	82, 100, 230, 616, 714
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	4 cut(s)	488, 511, 617, 727
BseSI	GKGCMC	3 cut(s)	223, 418, 611
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	9 cut(s)	74, 104, 140, 196, 227, 235, 303, 352, 609
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	83, 224
BslFI	GGGAC	5 cut(s)	343, 437, 599, 718, 749
BslI	CCNNNNNNNGG	5 cut(s)	82, 100, 230, 616, 714
BsmFI	GGGAC	5 cut(s)	343, 437, 599, 718, 749
BsnI	GGCC	9 cut(s)	74, 104, 140, 196, 227, 235, 303, 352, 609
Bsp120I	GGGCCC	1 cut(s)	607
Bsp1286I	GDGCHC	3 cut(s)	223, 418, 611
Bsp143I	GATC	2 cut(s)	447, 553
BspACI	CCGC	5 cut(s)	50, 171, 300, 353, 439
BspANI	GGCC	9 cut(s)	74, 104, 140, 196, 227, 235, 303, 352, 609
BspCNI	CTCAG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	609, 706
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	447, 553
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	91, 420
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	166, 207
BstF5I	GGATG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	450, 556
BstMBI	GATC	2 cut(s)	447, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstSLI	GKGCMC	3 cut(s)	223, 418, 611
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	9 cut(s)	74, 104, 140, 196, 227, 235, 303, 352, 609
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	386, 553
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	7 cut(s)	73, 194, 233, 350, 607, 608, 705
CseI	GACGC	3 cut(s)	325, 434, 632
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	3 cut(s)	452, 581, 709
DdeI	CTNAG	2 cut(s)	166, 207
DpnI	GATC	2 cut(s)	449, 555
DpnII	GATC	2 cut(s)	447, 553
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	3 cut(s)	102, 225, 301
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	705
Eco57I	CTGAAG	2 cut(s)	376, 663
EcoO109I	RGGNCCY	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	3 cut(s)	455, 584, 712
FaqI	GGGAC	5 cut(s)	343, 437, 599, 718, 749
FatI	CATG	3 cut(s)	451, 580, 708
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	50, 301, 353, 639
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	50, 301, 353, 639
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	50, 301, 353, 639
HaeIII	GGCC	9 cut(s)	74, 104, 140, 196, 227, 235, 303, 352, 609
HapII	CCGG	2 cut(s)	83, 224
HgaI	GACGC	3 cut(s)	325, 434, 632
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	455, 584, 712
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	266, 662
HpaII	CCGG	2 cut(s)	83, 224
HphI	GGTGA	7 cut(s)	26, 33, 526, 563, 671, 680, 733
Hpy166II	GTNNAC	3 cut(s)	34, 221, 622
Hpy8I	GTNNAC	3 cut(s)	34, 221, 622
Hpy99I	CGWCG	2 cut(s)	241, 341
HpyAV	CCTTC	6 cut(s)	54, 86, 522, 526, 586, 671
HpyCH4III	ACNGT	2 cut(s)	91, 420
HpyCH4IV	ACGT	2 cut(s)	282, 374
HpyCH4V	TGCA	2 cut(s)	156, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	2 cut(s)	166, 207
HpySE526I	ACGT	2 cut(s)	282, 374
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	455, 584, 712
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	447, 553
LmnI	GCTCC	1 cut(s)	498
Lsp1109I	GCAGC	1 cut(s)	625
MaeII	ACGT	2 cut(s)	282, 374
MaeIII	GTNAC	3 cut(s)	39, 244, 267
MalI	GATC	2 cut(s)	449, 555
MboI	GATC	2 cut(s)	447, 553
MboII	GAAGA	5 cut(s)	71, 134, 502, 505, 529
MhlI	GDGCHC	3 cut(s)	223, 418, 611
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	572, 757
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	275, 671
MmeI	TCCRAC	2 cut(s)	303, 670
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	2 cut(s)	83, 224
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	447, 553
NlaIII	CATG	3 cut(s)	455, 584, 712
NlaIV	GGNNCC	2 cut(s)	609, 706
NmuCI	GTSAC	2 cut(s)	39, 267
NsbI	TGCGCA	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	51, 302, 354, 640
PleI	GAGTC	2 cut(s)	274, 670
PpsI	GAGTC	2 cut(s)	274, 670
PspN4I	GGNNCC	2 cut(s)	609, 706
PspOMI	GGGCCC	1 cut(s)	607
PspPI	GGNCC	7 cut(s)	73, 194, 233, 350, 607, 608, 705
PvuII	CAGCTG	1 cut(s)	445
SatI	GCNGC	4 cut(s)	50, 301, 353, 639
Sau3AI	GATC	2 cut(s)	447, 553
Sau96I	GGNCC	7 cut(s)	73, 194, 233, 350, 607, 608, 705
SchI	GAGTC	2 cut(s)	275, 671
SduI	GDGCHC	3 cut(s)	223, 418, 611
SinI	GGWCC	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	572, 757
SsiI	CCGC	5 cut(s)	50, 171, 300, 353, 439
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	91, 420
TaiI	ACGT	2 cut(s)	285, 377
TaqI	TCGA	2 cut(s)	264, 339
TasI	AATT	2 cut(s)	572, 757
TauI	GCSGC	3 cut(s)	52, 303, 355
TscAI	CASTG	2 cut(s)	386, 553
TseFI	GTSAC	2 cut(s)	39, 267
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	2 cut(s)	39, 267
TspDTI	ATGAA	3 cut(s)	17, 468, 690
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	386, 553
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.