RchiOBHm_Chr5g0001691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003154
Physical Location & Seq
Forward (+)
909390 .. 911193
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28310

Sequence Viewer

Length: 696 bp
ATGAAGAAGCTGTACCGCAGAGGCACGGTTCATCCGTCACCGCCAACCGTGTCCGACCACCTGTCCTTCCTTCCCGCCACCATCCTCGCCCTCGCGGCCGCCCTGTCCCTCGAGGACAGGGAGGTCCTGGCTTACCTCATCTCCTGCTCCAACACTAACAACGTCAACTTAACATCCTCACCCTCCTCACGTAAGACTAACACCACAACCGCCACCAACAGCAGCAACAAAAAGAGTTCCGCCGCCAAAAGAGGCGGCGGAAGCGGCGGCGGGGACCACCCGGCGCGGTTCAACTGCAGCTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCGAATCGAGAACTGATCCATGAGATCATCGATGCTTTTGAAGATGAGCTACTTTCATCTCAGAGTGGCAGTAGTAGTAGTAAAGCGGCTGGGTCGAAGTATGGTAAGAAGGACAAGAGGCACCATAACAAGAGAGGAAACAGTGGTAACGGGCCGGGTCAAGGATCGGAGTTGAGTCTGAAGAAGAAGGATCAGATGGTGAAGCCTAACATGGTGGAGGAGACTAATAGTAGTAGTAGTAACAGTACTGACTCTGGTGATCTTGATGGTGATGAGGAAAGCAAGGGATCGGTGAGAAGATTTGTGAGCTTTCTTGGAGAGAGGATATGGGGTGGTGTCTGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.04

Weight (kDa)

9.14

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AbsI CCTCGAGG 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 465
AccII CGCG 2 cut(s) 95, 286
AclWI GGATC 4 cut(s) 355, 517, 543, 640
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 289, 545
AfaI GTAC 2 cut(s) 14, 592
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 2 cut(s) 292, 386
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 10, 300, 394, 654
AluI AGCT 4 cut(s) 10, 300, 394, 654
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 4 cut(s) 355, 517, 543, 640
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 96, 497
ApeKI GCWGC 3 cut(s) 222, 297, 300
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 124, 274, 497
AsuC2I CCSGG 2 cut(s) 281, 501
AsuHPI GGTGA 6 cut(s) 30, 171, 556, 614, 626, 649
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 124, 274
BanI GGYRCC 1 cut(s) 465
BarI GAAGNNNNNNTAC 3 cut(s) 28, 378, 410
BauI CACGAG 1 cut(s) 316
BbvI GCAGC 3 cut(s) 234, 287, 309
BccI CCATC 4 cut(s) 89, 327, 535, 605
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 2 cut(s) 281, 501
BcoDI GTCTC 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 3 cut(s) 128, 281, 501
Bme18I GGWCC 2 cut(s) 124, 274
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 124, 274, 497
BmiI GGNNCC 3 cut(s) 275, 467, 689
BmrFI CCNGG 3 cut(s) 128, 281, 501
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 334
BpuMI CCSGG 2 cut(s) 281, 501
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 2 cut(s) 329, 691
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 3 cut(s) 31, 81, 173
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 329, 691
BseRI GAGGAG 2 cut(s) 175, 578
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 234, 287, 309
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 95, 286
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 98, 499
BshNI GGYRCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 281, 500
BslFI GGGAC 3 cut(s) 91, 287, 350
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 3 cut(s) 91, 287, 350
BsnI GGCC 2 cut(s) 98, 499
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 6 cut(s) 360, 369, 509, 535, 604, 632
BspANI GGCC 2 cut(s) 98, 499
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 2 cut(s) 95, 286
BspLI GGNNCC 3 cut(s) 275, 467, 689
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 4 cut(s) 355, 517, 543, 640
BspT107I GGYRCC 1 cut(s) 465
BsrI ACTGG 2 cut(s) 329, 691
BssMI GATC 6 cut(s) 360, 369, 509, 535, 604, 632
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 28, 49, 488, 590
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 31, 81, 173
BstFNI CGCG 2 cut(s) 95, 286
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 6 cut(s) 363, 372, 512, 538, 607, 635
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 6 cut(s) 360, 369, 509, 535, 604, 632
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 126, 279, 499
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 2 cut(s) 95, 286
BstV1I GCAGC 3 cut(s) 234, 287, 309
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 98, 499
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 3 cut(s) 31, 81, 173
BtsIMutI CAGTG 1 cut(s) 493
CciNI GCGGCCGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 124, 274, 497
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 2 cut(s) 13, 591
CviAII CATG 2 cut(s) 365, 556
CviQI GTAC 2 cut(s) 13, 591
DdeI CTNAG 1 cut(s) 405
DpnI GATC 6 cut(s) 362, 371, 511, 537, 606, 634
DpnII GATC 6 cut(s) 360, 369, 509, 535, 604, 632
DrdI GACNNNNNNGTC 1 cut(s) 122
DriI GACNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 229, 273
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 124, 274
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 289, 545
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 368, 559
FaiI YATR 5 cut(s) 366, 447, 471, 557, 673
FaqI GGGAC 3 cut(s) 91, 287, 350
FatI CATG 2 cut(s) 364, 555
FauI CCCGC 2 cut(s) 82, 263
FokI GGATG 3 cut(s) 18, 68, 160
GlaI GCGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 98, 499
HapII CCGG 2 cut(s) 281, 500
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 368, 559
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 4 cut(s) 341, 349, 520, 596
HpaII CCGG 2 cut(s) 281, 500
HphI GGTGA 6 cut(s) 30, 171, 556, 614, 626, 649
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 6 cut(s) 55, 332, 408, 514, 525, 540
Hpy188III TCNNGA 3 cut(s) 353, 608, 685
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 76, 80, 448, 526
HpyCH4III ACNGT 4 cut(s) 28, 49, 488, 590
HpyCH4IV ACGT 2 cut(s) 162, 190
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 162, 190
Hsp92II CATG 2 cut(s) 368, 559
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 6 cut(s) 360, 369, 509, 535, 604, 632
LmnI GCTCC 2 cut(s) 152, 687
Lsp1109I GCAGC 3 cut(s) 234, 287, 309
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 162, 190
MaeIII GTNAC 4 cut(s) 36, 320, 491, 584
MalI GATC 6 cut(s) 362, 371, 511, 537, 606, 634
MboI GATC 6 cut(s) 360, 369, 509, 535, 604, 632
MboII GAAGA 5 cut(s) 16, 398, 538, 541, 654
MlyI GAGTC 3 cut(s) 350, 529, 590
MmeI TCCRAC 2 cut(s) 78, 174
MseI TTAA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 2 cut(s) 281, 500
MspR9I CCNGG 3 cut(s) 128, 281, 501
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 95, 286
MwoI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
NciI CCSGG 2 cut(s) 281, 501
NdeII GATC 6 cut(s) 360, 369, 509, 535, 604, 632
NlaIII CATG 2 cut(s) 368, 559
NlaIV GGNNCC 3 cut(s) 275, 467, 689
NmuCI GTSAC 1 cut(s) 36
NotI GCGGCCGC 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 349
PleI GAGTC 3 cut(s) 349, 528, 590
PpsI GAGTC 3 cut(s) 349, 528, 590
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 275, 467, 689
PspPI GGNCC 3 cut(s) 124, 274, 497
PspPPI RGGWCCY 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 14, 592
RsaNI GTAC 2 cut(s) 13, 591
SaqAI TTAA 1 cut(s) 170
Sau3AI GATC 6 cut(s) 360, 369, 509, 535, 604, 632
Sau96I GGNCC 3 cut(s) 124, 274, 497
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 3 cut(s) 350, 529, 590
ScrFI CCNGG 3 cut(s) 128, 281, 501
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 124, 274
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 126, 279, 499
TaaI ACNGT 4 cut(s) 28, 49, 488, 590
TaiI ACGT 2 cut(s) 165, 193
TaqI TCGA 4 cut(s) 111, 352, 375, 440
TatI WGTACW 1 cut(s) 590
TauI GCSGC 7 cut(s) 98, 101, 245, 258, 267, 270, 434
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 222, 297, 300
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 17, 20, 390
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 124, 274
XhoI CTCGAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.