Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

1182586 .. 1183287

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG016700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAGAAGCTGTACCGCAGAGGCACGGTTCATCCGTCACCGCCAACCGTGTCCGACCACCTGTCCTTCCTTCCCGCCACGATCCTCGCTCTCGCGGCCGCCCTGTCCCTCGAGGACAGGGAGGTCCTGGCTTACCTCATCTCCTGCTCCAACACTAACAACGTCAACCTAGCATCGTCACCCTCCTCACGTAAGACTACTACCACAACCGCCACCAACAGCAGCAACAAAAAGAGTTCCGCCGCCAAAGGAGGCGGCGGAAGCGGCGGCAGGGACCACCCGGCGCGGTTCAACTGCAGCTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCACCGAATCGAGAACTGATCCATGAGATCATCGATGCTTTTGAAGATGAGCTACTTTCATCTCAGAGTGGCAGCAGCAGTAGTAGTAGTAGTAAAGCGGCTGGGTCGAAGTATGGTAAGAAGGACAAGAGGCACCATAACAAGAGAGGAAACAGTGCTAACGGGCCGGGTCAAGGATCGGAGTTGAGTTTGAAGAAGAAGGATCAGATGGTGAAGCCTAACATGGTGGAGGAGACTAATAGTAGTAGTAACAGTACTGACTCTGGTGATCTTGATGGTGATGAGGAAAGCAAGGGATCGGTGAGAAGATTTGTGAGCTTTCTTGGAGAGAGGATATGGGGTGGTGTCTGGAGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.19

Weight (kDa)

9.14

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AbsI	CCTCGAGG	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	474
AccII	CGCG	2 cut(s)	95, 286
AclWI	GGATC	5 cut(s)	76, 355, 526, 552, 646
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	14, 598
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	292, 386, 535
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	4 cut(s)	10, 300, 394, 660
AluI	AGCT	4 cut(s)	10, 300, 394, 660
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	5 cut(s)	76, 355, 526, 552, 646
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	96, 506
ApeKI	GCWGC	5 cut(s)	222, 297, 300, 414, 417
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	124, 274, 506
AsuC2I	CCSGG	2 cut(s)	281, 510
AsuHPI	GGTGA	7 cut(s)	30, 171, 336, 565, 620, 632, 655
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	124, 274
BanI	GGYRCC	1 cut(s)	474
BarI	GAAGNNNNNNTAC	3 cut(s)	28, 378, 410
BauI	CACGAG	1 cut(s)	316
BbvI	GCAGC	5 cut(s)	234, 287, 309, 426, 429
BccI	CCATC	3 cut(s)	327, 544, 611
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	2 cut(s)	281, 510
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	295
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	3 cut(s)	128, 281, 510
Bme18I	GGWCC	2 cut(s)	124, 274
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	124, 274, 506
BmiI	GGNNCC	3 cut(s)	275, 476, 695
BmrFI	CCNGG	3 cut(s)	128, 281, 510
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	182, 367
BmuI	ACTGGG	1 cut(s)	334
BpuMI	CCSGG	2 cut(s)	281, 510
Bsa29I	ATCGAT	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	329, 697
BseBI	CCWGG	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	375
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	329, 697
BseRI	GAGGAG	2 cut(s)	175, 587
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	234, 287, 309, 426, 429
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	95, 286
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 508
BshNI	GGYRCC	1 cut(s)	474
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	281, 509
BslFI	GGGAC	3 cut(s)	91, 287, 350
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	3 cut(s)	91, 287, 350
BsnI	GGCC	2 cut(s)	98, 508
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
BspANI	GGCC	2 cut(s)	98, 508
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	2 cut(s)	95, 286
BspLI	GGNNCC	3 cut(s)	275, 476, 695
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	5 cut(s)	76, 355, 526, 552, 646
BspT107I	GGYRCC	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	329, 697
BssMI	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	4 cut(s)	28, 49, 497, 596
BstBAI	YACGTR	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	2 cut(s)	95, 286
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	7 cut(s)	84, 363, 372, 521, 547, 613, 641
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 261, 264, 309
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	126, 279, 508
BstSFI	CTRYAG	1 cut(s)	295
BstUI	CGCG	2 cut(s)	95, 286
BstV1I	GCAGC	5 cut(s)	234, 287, 309, 426, 429
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	98, 508
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	502
CciNI	GCGGCCGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	124, 274, 506
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	13, 597
CviAII	CATG	2 cut(s)	365, 565
CviQI	GTAC	2 cut(s)	13, 597
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	7 cut(s)	83, 362, 371, 520, 546, 612, 640
DpnII	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	229, 273
EclXI	CGGCCG	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	124, 274
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	368, 568
FaiI	YATR	5 cut(s)	366, 456, 480, 566, 679
FaqI	GGGAC	3 cut(s)	91, 287, 350
FatI	CATG	2 cut(s)	364, 564
FauI	CCCGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	18
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	98, 508
HapII	CCGG	2 cut(s)	281, 509
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	368, 568
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	341, 349, 602
HpaII	CCGG	2 cut(s)	281, 509
HphI	GGTGA	7 cut(s)	30, 171, 336, 565, 620, 632, 655
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	5 cut(s)	55, 332, 408, 523, 549
Hpy188III	TCNNGA	3 cut(s)	353, 614, 691
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	76, 80, 457, 535
HpyCH4III	ACNGT	4 cut(s)	28, 49, 497, 596
HpyCH4IV	ACGT	2 cut(s)	162, 190
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 261, 264, 309
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	162, 190
Hsp92II	CATG	2 cut(s)	368, 568
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
LmnI	GCTCC	2 cut(s)	152, 693
Lsp1109I	GCAGC	5 cut(s)	234, 287, 309, 426, 429
LweI	GCATC	2 cut(s)	182, 367
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	162, 190
MaeIII	GTNAC	5 cut(s)	36, 177, 320, 342, 590
MalI	GATC	7 cut(s)	83, 362, 371, 520, 546, 612, 640
MboI	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
MboII	GAAGA	5 cut(s)	16, 398, 547, 550, 660
MlyI	GAGTC	2 cut(s)	350, 596
MmeI	TCCRAC	2 cut(s)	78, 174
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	2 cut(s)	281, 509
MspR9I	CCNGG	3 cut(s)	128, 281, 510
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	95, 286
MwoI	GCNNNNNNNGC	4 cut(s)	95, 261, 264, 309
NciI	CCSGG	2 cut(s)	281, 510
NdeII	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
NlaIII	CATG	2 cut(s)	368, 568
NlaIV	GGNNCC	3 cut(s)	275, 476, 695
NmuCI	GTSAC	3 cut(s)	36, 177, 342
NotI	GCGGCCGC	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	349, 596
PpsI	GAGTC	2 cut(s)	349, 596
Ppu21I	YACGTR	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	275, 476, 695
PspPI	GGNCC	3 cut(s)	124, 274, 506
PspPPI	RGGWCCY	1 cut(s)	124
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	14, 598
RsaNI	GTAC	2 cut(s)	13, 597
Sau3AI	GATC	7 cut(s)	81, 360, 369, 518, 544, 610, 638
Sau96I	GGNCC	3 cut(s)	124, 274, 506
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	2 cut(s)	350, 596
ScrFI	CCNGG	3 cut(s)	128, 281, 510
SfaNI	GCATC	2 cut(s)	182, 367
SfcI	CTRYAG	1 cut(s)	295
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	124, 274
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	126, 279, 508
TaaI	ACNGT	4 cut(s)	28, 49, 497, 596
TaiI	ACGT	2 cut(s)	165, 193
TaqI	TCGA	4 cut(s)	111, 352, 375, 449
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	7 cut(s)	98, 101, 245, 258, 267, 270, 443
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	3 cut(s)	36, 177, 342
TseI	GCWGC	5 cut(s)	222, 297, 300, 414, 417
Tsp45I	GTSAC	3 cut(s)	36, 177, 342
TspDTI	ATGAA	3 cut(s)	17, 20, 390
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	124, 274
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.