Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

28758268 .. 28758918

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAGAAGCTCTACCGAAAGGGAGCGGTTCATCCGTCACCGCCAATCATATCAGACCACCTGGCCTTTCTTCCCGCCACCATCCTCACCCTGGCGGCGGCTCTGTCACCCGAGGACAGAGAAGTCCTGGCTTACCTTATCTCCTGTTCTAACTGCTCCGTCAACTTATCCTCCTCATCCTCGTACGCTCCTCCACGTAATAGGACAACCGCCACCGCCAAAAAGACGGCAGCAGCAAAGGGCGGCAGCGGGAGCGGTGGGGTTGGCGGGGACCACCCGGCTAGGTTTAACTGCGACTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCAAATCGCCAACTCATCCACGAGATCATCGATGCTTTTGAAGATGAGCTGCTGACTGAGAGCAAAGGGTTTTCATCAAAGACTAGTAGGAAGGAGAGGAGGAACAAGAGTAGGGCTAATAATGGCTCGGGTGAGTTGAAGAGGTCCGAGTTGAGTGTGAAAAGGAAGGAGCTGGCTCAGTCTCACACGGCGGATCAAGAGGCCGGTGGTGGCGGCGGAGAGGTTGTTGAGGAAGCCTCGGAAAAAGGGTCAGTGAGAAGGTTTGTGAGCTTTCTTGGAGAGAGAATATGGGGTGTGTGGAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.57

Weight (kDa)

9.11

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccBSI	CCGCTC	2 cut(s)	26, 255
AclWI	GGATC	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	91, 97
AgsI	TTSAA	2 cut(s)	383, 481
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	3 cut(s)	60, 90, 126
AluBI	AGCT	4 cut(s)	10, 391, 514, 612
AluI	AGCT	4 cut(s)	10, 391, 514, 612
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	543
Ama87I	CYCGRG	2 cut(s)	110, 469
AoxI	GGCC	2 cut(s)	63, 543
ApeKI	GCWGC	4 cut(s)	230, 233, 246, 391
AspS9I	GGNCC	2 cut(s)	271, 486
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	4 cut(s)	30, 79, 99, 485
AvaI	CYCGRG	2 cut(s)	110, 469
AvaII	GGWCC	2 cut(s)	271, 486
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	313, 362
BbvI	GCAGC	4 cut(s)	242, 245, 258, 378
BccI	CCATC	2 cut(s)	89, 324
BceAI	ACGGC	2 cut(s)	243, 546
BciT130I	CCWGG	3 cut(s)	62, 92, 128
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	282, 426
BisI	GCNGC	8 cut(s)	96, 99, 231, 234, 244, 247, 392, 556
BlsI	GCNGC	8 cut(s)	97, 100, 232, 235, 245, 248, 393, 557
Bme1390I	CCNGG	4 cut(s)	62, 92, 128, 278
Bme18I	GGWCC	2 cut(s)	271, 486
BmeT110I	CYCGRG	2 cut(s)	110, 469
BmgT120I	GGNCC	2 cut(s)	271, 486
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	4 cut(s)	62, 92, 128, 278
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpuMI	CCSGG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	90, 111, 579
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 155, 185, 552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 97
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	3 cut(s)	62, 92, 128
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	90, 111, 579
BseGI	GGATG	4 cut(s)	31, 81, 176, 357
BseLI	CCNNNNNNNGG	2 cut(s)	91, 97
BseMII	CTCAG	2 cut(s)	390, 533
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	163, 180, 454
BseXI	GCAGC	4 cut(s)	242, 245, 258, 378
BshFI	GGCC	2 cut(s)	65, 545
BshVI	ATCGAT	1 cut(s)	372
BsiHKCI	CYCGRG	2 cut(s)	110, 469
BsiSI	CCGG	2 cut(s)	278, 546
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	284, 347
BslI	CCNNNNNNNGG	2 cut(s)	91, 97
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	2 cut(s)	284, 347
BsnI	GGCC	2 cut(s)	65, 545
BsoBI	CYCGRG	2 cut(s)	110, 469
Bsp143I	GATC	2 cut(s)	366, 535
BspANI	GGCC	2 cut(s)	65, 545
BspCNI	CTCAG	2 cut(s)	391, 532
BspDI	ATCGAT	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	543
BsrBI	CCGCTC	2 cut(s)	26, 255
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	90, 111, 579
BssMI	GATC	2 cut(s)	366, 535
BssSI	CACGAG	2 cut(s)	313, 362
Bst2BI	CACGAG	2 cut(s)	313, 362
Bst2UI	CCWGG	3 cut(s)	62, 92, 128
Bst6I	CTCTTC	1 cut(s)	476
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	399, 519
BstF5I	GGATG	4 cut(s)	31, 81, 176, 357
BstKTI	GATC	2 cut(s)	369, 538
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	2 cut(s)	366, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 306
BstNI	CCWGG	3 cut(s)	62, 92, 128
BstSCI	CCNGG	4 cut(s)	60, 90, 126, 276
BstV1I	GCAGC	4 cut(s)	242, 245, 258, 378
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	65, 545
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	31, 81, 176, 357
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	271, 486
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	184
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	399, 519
DpnI	GATC	2 cut(s)	368, 537
DpnII	GATC	2 cut(s)	366, 535
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	2 cut(s)	548, 573
Eco47I	GGWCC	2 cut(s)	271, 486
Eco57I	CTGAAG	1 cut(s)	286
Eco88I	CYCGRG	2 cut(s)	110, 469
EcoRII	CCWGG	3 cut(s)	60, 90, 126
FaiI	YATR	2 cut(s)	50, 631
FaqI	GGGAC	2 cut(s)	284, 347
FauI	CCCGC	3 cut(s)	82, 242, 260
Fnu4HI	GCNGC	8 cut(s)	96, 99, 231, 234, 244, 247, 392, 556
FokI	GGATG	4 cut(s)	18, 68, 163, 344
Fsp4HI	GCNGC	8 cut(s)	96, 99, 231, 234, 244, 247, 392, 556
FspBI	CTAG	2 cut(s)	282, 426
GluI	GCNGC	8 cut(s)	96, 99, 231, 234, 244, 247, 392, 556
HaeIII	GGCC	2 cut(s)	65, 545
HapII	CCGG	2 cut(s)	278, 546
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	338, 643
HpaII	CCGG	2 cut(s)	278, 546
HphI	GGTGA	4 cut(s)	30, 79, 99, 485
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	55, 329, 490, 583
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	427, 502, 594
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 306
HpyF3I	CTNAG	2 cut(s)	399, 519
HpySE526I	ACGT	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	366, 535
LmnI	GCTCC	5 cut(s)	23, 161, 193, 252, 511
Lsp1109I	GCAGC	4 cut(s)	242, 245, 258, 378
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	282, 426
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	36, 105, 317
MalI	GATC	2 cut(s)	368, 537
MbiI	CCGCTC	2 cut(s)	26, 255
MboI	GATC	2 cut(s)	366, 535
MboII	GAAGA	4 cut(s)	16, 62, 395, 493
MlyI	GAGTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	2 cut(s)	278, 546
MspR9I	CCNGG	4 cut(s)	62, 92, 128, 278
MvaI	CCWGG	3 cut(s)	62, 92, 128
MwoI	GCNNNNNNNGC	2 cut(s)	252, 306
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	366, 535
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	36, 105
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	8 cut(s)	97, 100, 232, 235, 245, 248, 393, 557
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	60, 90, 126
PspGI	CCWGG	3 cut(s)	60, 90, 126
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	271, 486
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	8 cut(s)	96, 99, 231, 234, 244, 247, 392, 556
Sau3AI	GATC	2 cut(s)	366, 535
Sau96I	GGNCC	2 cut(s)	271, 486
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	4 cut(s)	62, 92, 128, 278
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	271, 486
SpeI	ACTAGT	1 cut(s)	425
SspMI	CTAG	2 cut(s)	282, 426
StyD4I	CCNGG	4 cut(s)	60, 90, 126, 276
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	372
TauI	GCSGC	4 cut(s)	98, 101, 246, 558
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	2 cut(s)	36, 105
TseI	GCWGC	4 cut(s)	230, 233, 246, 391
Tsp45I	GTSAC	2 cut(s)	36, 105
TspDTI	ATGAA	3 cut(s)	17, 20, 405
TspGWI	ACGGA	2 cut(s)	24, 148
TspRI	CASTG	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	271, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	282, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.