Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7966984.1

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 445

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7966984.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

caacaacaacaacaacaacaattcgaccagcatcaacaccaacaaggccaacgatgcccataaagctggaaatgatcaccctgatcctccgatgtcccagtgcgactgctttaggtgctacaagagcttctgggcacgatgggatgcttcccccaaccggcagctcatacatgaaatcatcgaggcgtacgaggaaaagttggctgagaagaaaaggagaaatcccaaggtgaagaaagtgaggaagaagaaaattgaggaggaaacgaagggtaatattgataatctaccggtcatgaaagaggagctgagtaataatccagaagtggatgtggaaaacagtgatggtgatgaagaaggctgtgaggttgaggttgagaaaggatcctccatgaggaggttggcgagcttcattggggataggatttggggtgtttggaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.93

Weight (kDa)

5.72

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	78, 379, 392
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	157, 394, 397
AgeI	ACCGGT	1 cut(s)	290
AluBI	AGCT	5 cut(s)	66, 127, 164, 308, 409
AluI	AGCT	5 cut(s)	66, 127, 164, 308, 409
AlwI	GGATC	3 cut(s)	78, 379, 392
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	69, 242, 360
BaeGI	GKGCMC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	133, 339
BclI	TGATCA	1 cut(s)	74
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	40, 44, 134
BmuI	ACTGGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 394, 397
Bse118I	RCCGGY	2 cut(s)	157, 290
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	149, 335
BseLI	CCNNNNNNNGG	3 cut(s)	157, 394, 397
BseMII	CTCAG	2 cut(s)	196, 300
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	3 cut(s)	273, 318, 410
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	48
BshTI	ACCGGT	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	158, 291
BsiWI	CGTACG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	157, 394, 397
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	74, 83, 384
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	197, 301
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	3 cut(s)	78, 379, 392
BsrFI	RCCGGY	2 cut(s)	157, 290
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	2 cut(s)	157, 290
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	74, 83, 384
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	205, 309
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	149, 335
BstKTI	GATC	3 cut(s)	77, 86, 387
BstMBI	GATC	3 cut(s)	74, 83, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 63, 115, 124
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	149, 335
BtsIMutI	CAGTG	2 cut(s)	105, 347
Cac8I	GCNNGC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	157, 290
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	290
CviAII	CATG	3 cut(s)	171, 296, 392
CviJI	RGCY	8 cut(s)	48, 66, 127, 164, 204, 308, 361, 409
CviKI_1	RGCY	8 cut(s)	48, 66, 127, 164, 204, 308, 361, 409
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	205, 309
DpnI	GATC	3 cut(s)	76, 85, 386
DpnII	GATC	3 cut(s)	74, 83, 384
Eco130I	CCWWGG	1 cut(s)	226
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	174, 299, 395
FaiI	YATR	5 cut(s)	61, 168, 172, 297, 393
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	170, 295, 391
FbaI	TGATCA	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	156, 342
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	158, 291
Hin1II	CATG	3 cut(s)	174, 299, 395
HpaII	CCGG	2 cut(s)	158, 291
HphI	GGTGA	3 cut(s)	69, 242, 360
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	296, 321
HpyAV	CCTTC	2 cut(s)	263, 351
HpyCH4III	ACNGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 63, 115, 124
HpyF3I	CTNAG	2 cut(s)	205, 309
Hsp92II	CATG	3 cut(s)	174, 299, 395
Ksp22I	TGATCA	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	74, 83, 384
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	8 cut(s)	41, 52, 94, 111, 116, 171, 304, 334
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	40, 44, 134
MalI	GATC	3 cut(s)	76, 85, 386
MboI	GATC	3 cut(s)	74, 83, 384
MboII	GAAGA	5 cut(s)	221, 245, 257, 260, 366
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	3 cut(s)	20, 253, 440
MspI	CCGG	2 cut(s)	158, 291
MwoI	GCNNNNNNNGC	4 cut(s)	54, 63, 115, 124
NdeII	GATC	3 cut(s)	74, 83, 384
NlaIII	CATG	3 cut(s)	174, 299, 395
NlaIV	GGNNCC	1 cut(s)	386
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
Pfl23II	CGTACG	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	163
PspLI	CGTACG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	74, 83, 384
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	40, 44, 134
Sse9I	AATT	3 cut(s)	20, 253, 440
SspI	AATATT	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	24, 181
TasI	AATT	3 cut(s)	20, 253, 440
TscAI	CASTG	2 cut(s)	105, 347
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	187, 312, 367, 401
TspRI	CASTG	2 cut(s)	105, 347
XagI	CCTNNNNNAGG	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.