Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

31731628 .. 31732041

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGAAGCTCTACCGAAAGGCCACGGTTCATCCGTCACCGCCAATCATATCAGACCACCTGGCTTTCCTTCCCGCCACCATCCTCACCCTGGCGGCGGCTCTGTCACCCGAGGATAGAGAAGTTCTGGCGTACCTCATCTCCTGTTCTAACAGCTCCGTTAACTTATCCTCTTCCTCCTCGTACGCTCCTCCACGTAATAAGACATCCGCCGCCGCCTCCAAAAAGACGGCAGCAGCAAAAGGCGGCATCGGCAGCGGTGGGGTCGGCGGGGACCACCTGGCTAGGTTTAACTGCAACTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCAAATCGCCAACTCATCCACGATTTAAGGATCGATCATCGATGCTTTCGAAGATGTGCTGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.97

Weight (kDa)

9.44

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	134, 185
AfiI	CCNNNNNNNGG	2 cut(s)	91, 97
AjnI	CCWGG	3 cut(s)	60, 90, 279
AluBI	AGCT	2 cut(s)	10, 156
AluI	AGCT	2 cut(s)	10, 156
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	4 cut(s)	233, 236, 255, 404
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	30, 79, 99
AsuII	TTCGAA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	245, 248, 267, 391
BccI	CCATC	2 cut(s)	89, 327
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	3 cut(s)	62, 92, 281
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	9 cut(s)	96, 99, 213, 216, 234, 237, 247, 256, 405
BlsI	GCNGC	9 cut(s)	97, 100, 214, 217, 235, 238, 248, 257, 406
Bme1390I	CCNGG	3 cut(s)	62, 92, 281
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	3 cut(s)	62, 92, 281
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	258, 377
BmuI	ACTGGG	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	394
Bsa29I	ATCGAT	2 cut(s)	378, 385
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	24, 90, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 97
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	62, 92, 281
BseCI	ATCGAT	2 cut(s)	378, 385
BseDI	CCNNGG	3 cut(s)	24, 90, 111
BseGI	GGATG	4 cut(s)	31, 81, 206, 360
BseLI	CCNNNNNNNGG	2 cut(s)	91, 97
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	169, 180
BseXI	GCAGC	4 cut(s)	245, 248, 267, 391
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	2 cut(s)	378, 385
BsiHKCI	CYCGRG	1 cut(s)	110
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	287, 350
BslI	CCNNNNNNNGG	2 cut(s)	91, 97
BsmFI	GGGAC	2 cut(s)	287, 350
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	375, 379
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	2 cut(s)	378, 385
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	24, 90, 111
BssMI	GATC	2 cut(s)	375, 379
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	3 cut(s)	62, 92, 281
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	394
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	31, 81, 206, 360
BstKTI	GATC	2 cut(s)	378, 382
BstMBI	GATC	2 cut(s)	375, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 255, 309
BstNI	CCWGG	3 cut(s)	62, 92, 281
BstSCI	CCNGG	3 cut(s)	60, 90, 279
BstV1I	GCAGC	4 cut(s)	245, 248, 267, 391
Bsu15I	ATCGAT	2 cut(s)	378, 385
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	2 cut(s)	378, 385
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	31, 81, 206, 360
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	2 cut(s)	378, 385
Csp6I	GTAC	2 cut(s)	133, 184
CviJI	RGCY	6 cut(s)	10, 23, 65, 101, 156, 284
CviKI_1	RGCY	6 cut(s)	10, 23, 65, 101, 156, 284
CviQI	GTAC	2 cut(s)	133, 184
DpnI	GATC	2 cut(s)	377, 381
DpnII	GATC	2 cut(s)	375, 379
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	3 cut(s)	60, 90, 279
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	2 cut(s)	287, 350
FauI	CCCGC	2 cut(s)	82, 263
Fnu4HI	GCNGC	9 cut(s)	96, 99, 213, 216, 234, 237, 247, 256, 405
FokI	GGATG	4 cut(s)	18, 68, 193, 347
Fsp4HI	GCNGC	9 cut(s)	96, 99, 213, 216, 234, 237, 247, 256, 405
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	9 cut(s)	96, 99, 213, 216, 234, 237, 247, 256, 405
HaeIII	GGCC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	341
HpaI	GTTAAC	1 cut(s)	163
HphI	GGTGA	3 cut(s)	30, 79, 99
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	55, 332
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 255, 309
HpySE526I	ACGT	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	375, 379
LmnI	GCTCC	2 cut(s)	161, 193
Lsp1109I	GCAGC	4 cut(s)	245, 248, 267, 391
LweI	GCATC	2 cut(s)	258, 377
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	36, 105, 320
MalI	GATC	2 cut(s)	377, 381
MboI	GATC	2 cut(s)	375, 379
MboII	GAAGA	3 cut(s)	16, 165, 408
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	8 cut(s)	95, 106, 146, 181, 187, 190, 201, 229
MseI	TTAA	3 cut(s)	162, 291, 371
MspA1I	CMGCKG	1 cut(s)	258
MspR9I	CCNGG	3 cut(s)	62, 92, 281
MvaI	CCWGG	3 cut(s)	62, 92, 281
MwoI	GCNNNNNNNGC	3 cut(s)	252, 255, 309
NdeII	GATC	2 cut(s)	375, 379
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	36, 105
NspV	TTCGAA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 391
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	9 cut(s)	97, 100, 214, 217, 235, 238, 248, 257, 406
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	60, 90, 279
PspGI	CCWGG	3 cut(s)	60, 90, 279
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	2 cut(s)	134, 185
RsaNI	GTAC	2 cut(s)	133, 184
SaqAI	TTAA	3 cut(s)	162, 291, 371
SatI	GCNGC	9 cut(s)	96, 99, 213, 216, 234, 237, 247, 256, 405
Sau3AI	GATC	2 cut(s)	375, 379
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	3 cut(s)	62, 92, 281
SetI	ASST	8 cut(s)	12, 63, 138, 158, 199, 282, 290, 311
SfaNI	GCATC	2 cut(s)	258, 377
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	60, 90, 279
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	378, 385, 394
TauI	GCSGC	5 cut(s)	98, 101, 215, 218, 249
Tru1I	TTAA	3 cut(s)	162, 291, 371
Tru9I	TTAA	3 cut(s)	162, 291, 371
TseFI	GTSAC	2 cut(s)	36, 105
TseI	GCWGC	4 cut(s)	233, 236, 255, 404
Tsp45I	GTSAC	2 cut(s)	36, 105
TspDTI	ATGAA	2 cut(s)	17, 20
TspGWI	ACGGA	2 cut(s)	24, 148
VpaK11BI	GGWCC	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.