Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

2998927 .. 2999628

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAGAAGCTCTACAACAAGAAGGGCAAAATCCACCCGTCACCGTCGCCGCCCTCCGTAGCCGACCCTCTGACCCTTCTTCCGGCAACCATCCTCGCCTTGGCCATATCCCTTTCCGCCGAAGACCAAGAGGTCTTGGCCTATCTCATCTCCTGCACCAACAACAACTCCTCAGGCGGTTGCGCGACGAACCAGCTTGGGCCCACTACTAAGTCCAATCCTGCACCGGCGACAAGACCGCCGCAGGTAATATCCATGCCTTGTATCAAGCCACACAATCCCAACGCGGACAAGACCTATGGCGATCACAAGGCCCACCAGAAGTGCGACTGCTTCAGGTGCTACATGAGTTTTTGGGCACGATGGGACGCCTCGCCGAACCGCCAGCTGATCCATGAAATCATTGAGGCTTACGAGGAGAGGTTGGTGGAGAAGAAGAGGTTAAGAAACTCAAAGGTGAAGAAAGAGAGAAGGAAGACTAACAAGGGCAGTGGTGGTCATTTGGGCTCTGGGGAATCAGTGCATGGGGACAAGAAGGAGGTGGAGGTAGGCCCACAAATGGTGGATGCTGGTGTTGTTGTTGATGAAGTGATGAGAGCTGGTGAGTCTGGTGATGAAGGTTGTAAGGTTGGAGCGGAGAGGGGGACCATAAGGAGGCTGGTGAGTGTCATTGGGGACAAGATTTGGGGTGTTTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.5

Weight (kDa)

9.12

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	635
AccII	CGCG	2 cut(s)	185, 287
AciI	CCGC	8 cut(s)	50, 117, 177, 239, 242, 287, 382, 635
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	82, 100, 559, 654
AluBI	AGCT	4 cut(s)	10, 196, 388, 599
AluI	AGCT	4 cut(s)	10, 196, 388, 599
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	5 cut(s)	102, 138, 200, 312, 550
ApaI	GGGCCC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	5 cut(s)	200, 201, 313, 551, 645
AsuHPI	GGTGA	5 cut(s)	33, 469, 614, 623, 673
AvaII	GGWCC	1 cut(s)	645
AxyI	CCTNAGG	1 cut(s)	172
BaeGI	GKGCMC	2 cut(s)	204, 361
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	204, 509
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	129, 482
BccI	CCATC	2 cut(s)	98, 357
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	50, 242
BlsI	GCNGC	2 cut(s)	51, 243
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	5 cut(s)	200, 201, 313, 551, 645
BmiI	GGNNCC	2 cut(s)	202, 646
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	2 cut(s)	129, 482
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 100, 559, 654
Bse118I	RCCGGY	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	90, 571
BseLI	CCNNNNNNNGG	4 cut(s)	82, 100, 559, 654
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	160, 431
BseSI	GKGCMC	2 cut(s)	204, 361
BsgI	GTGCAG	2 cut(s)	139, 207
Bsh1236I	CGCG	2 cut(s)	185, 287
BshFI	GGCC	5 cut(s)	104, 140, 202, 314, 552
BsiSI	CCGG	2 cut(s)	83, 227
BslFI	GGGAC	4 cut(s)	380, 542, 658, 689
BslI	CCNNNNNNNGG	4 cut(s)	82, 100, 559, 654
BsmFI	GGGAC	4 cut(s)	380, 542, 658, 689
BsnI	GGCC	5 cut(s)	104, 140, 202, 314, 552
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	204, 361, 509
Bsp143I	GATC	2 cut(s)	304, 390
BspACI	CCGC	8 cut(s)	50, 117, 177, 239, 242, 287, 382, 635
BspANI	GGCC	5 cut(s)	104, 140, 202, 314, 552
BspCNI	CTCAG	1 cut(s)	185
BspFNI	CGCG	2 cut(s)	185, 287
BspLI	GGNNCC	2 cut(s)	202, 646
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	385
BsrBI	CCGCTC	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	304, 390
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	172, 210
BstF5I	GGATG	2 cut(s)	90, 571
BstFNI	CGCG	2 cut(s)	185, 287
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	307, 393
BstMBI	GATC	2 cut(s)	304, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSLI	GKGCMC	2 cut(s)	204, 361
BstUI	CGCG	2 cut(s)	185, 287
BstV2I	GAAGAC	2 cut(s)	129, 482
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	5 cut(s)	104, 140, 202, 314, 552
BtsCI	GGATG	2 cut(s)	90, 571
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	496, 525
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	5 cut(s)	200, 201, 313, 551, 645
CseI	GACGC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	4 cut(s)	256, 346, 395, 524
DdeI	CTNAG	2 cut(s)	172, 210
DpnI	GATC	2 cut(s)	306, 392
DpnII	GATC	2 cut(s)	304, 390
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	204, 509
Eco47I	GGWCC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	204, 509
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	259, 349, 398, 527
FaiI	YATR	7 cut(s)	107, 257, 300, 347, 396, 525, 650
FaqI	GGGAC	4 cut(s)	380, 542, 658, 689
FatI	CATG	4 cut(s)	255, 345, 394, 523
Fnu4HI	GCNGC	2 cut(s)	50, 242
FokI	GGATG	2 cut(s)	77, 578
FriOI	GRGCYC	2 cut(s)	204, 509
Fsp4HI	GCNGC	2 cut(s)	50, 242
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	50, 242
HaeIII	GGCC	5 cut(s)	104, 140, 202, 314, 552
HapII	CCGG	2 cut(s)	83, 227
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	259, 349, 398, 527
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	515, 605
HpaII	CCGG	2 cut(s)	83, 227
HphI	GGTGA	5 cut(s)	33, 469, 614, 623, 673
Hpy188I	TCNGA	1 cut(s)	72
Hpy99I	CGWCG	2 cut(s)	49, 190
HpyAV	CCTTC	5 cut(s)	16, 86, 465, 529, 611
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	156, 224, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	172, 210
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	259, 349, 398, 527
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	304, 390
LmnI	GCTCC	1 cut(s)	632
LweI	GCATC	1 cut(s)	556
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	2 cut(s)	306, 392
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	2 cut(s)	304, 390
MboII	GAAGA	7 cut(s)	16, 71, 134, 445, 448, 472, 487
MhlI	GDGCHC	3 cut(s)	204, 361, 509
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	697
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	83, 227
MvnI	CGCG	2 cut(s)	185, 287
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	304, 390
NlaIII	CATG	4 cut(s)	259, 349, 398, 527
NlaIV	GGNNCC	2 cut(s)	202, 646
NmuCI	GTSAC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	51, 243
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	202, 646
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	5 cut(s)	200, 201, 313, 551, 645
PvuII	CAGCTG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	50, 242
Sau3AI	GATC	2 cut(s)	304, 390
Sau96I	GGNCC	5 cut(s)	200, 201, 313, 551, 645
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	3 cut(s)	204, 361, 509
SfaNI	GCATC	1 cut(s)	556
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	645
Sse9I	AATT	1 cut(s)	697
SsiI	CCGC	8 cut(s)	50, 117, 177, 239, 242, 287, 382, 635
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	45
TasI	AATT	1 cut(s)	697
TauI	GCSGC	2 cut(s)	52, 244
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	2 cut(s)	496, 525
TseFI	GTSAC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	17, 411, 600, 630
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	496, 525
VpaK11BI	GGWCC	1 cut(s)	645
XcmI	CCANNNNNNNNNTGG	2 cut(s)	97, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.