Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

23100119 .. 23101335

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62422.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAAAAGCTTTGCCGGAAAGGAACCGTTCATCCGTCGCCACCGCCGGCGATAAAGACCGACGAACAGTTTCTATCTCTTCTCCCCGTAGCTATCCTCTCTCTCGTGGCGGCGCTCTCGGTGGAGGATCGTGAAGTTCTTGCTTACCTCATCTCAAACTCCGGCGACTCAAATCGTATCTCTCGTCTCAAGAAAAACAAAGAAGATAATCATCACTCTCCTCTCTTTCTTTGTGATTGTTTTAGTTGTTACACGAGTTACTGGGTCAGATGGGACACGTCACCGAGGCGCCAACTCATTCACGAGATCATCGATGCTTACGAAGATAGTTTGGAGATGAAGAAGAAAAAGAAAGATCGGAGAAAGCGATCGGGAAAAGCTTCTGGACGAGTTAACTCGATAGGAACGAGTCGACTCAGTGAATTGGGTTCGAGTTCAGCCGAGTTTGCTGGTGGTGACTCGGAGAAAGATGGAAATTGCGGCGGTGAAGAGGCGGAGAAGGAGAAAGGCTCCGTTGGAAAGGTTATGAGTTTCATTGGTCAGAGATTTTTGGGAGTTTGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

9.07

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	5 cut(s)	44, 110, 480, 483, 494
AclWI	GGATC	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	276
AjiI	CACGTC	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	16, 48
AluBI	AGCT	3 cut(s)	10, 92, 380
AluI	AGCT	3 cut(s)	10, 92, 380
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	135
Asp700I	GAANNNNTTC	2 cut(s)	69, 379
AspLEI	GCGC	2 cut(s)	115, 291
AsuHPI	GGTGA	3 cut(s)	273, 467, 497
BanI	GGYRCC	1 cut(s)	288
BauI	CACGAG	3 cut(s)	104, 253, 302
BccI	CCATC	2 cut(s)	264, 464
BcoDI	GTCTC	1 cut(s)	191
BfoI	RGCGCY	2 cut(s)	116, 292
BisI	GCNGC	2 cut(s)	111, 481
BlsI	GCNGC	2 cut(s)	112, 482
BmgBI	CACGTC	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	25, 290, 511
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpuEI	CTTGAG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	16, 47, 162
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	127, 306, 355, 368
BspACI	CCGC	5 cut(s)	44, 110, 480, 483, 494
BspCNI	CTCAG	1 cut(s)	429
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	25, 290, 511
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	4 cut(s)	127, 306, 355, 368
BssNI	GRCGYC	1 cut(s)	289
BssSI	CACGAG	3 cut(s)	104, 253, 302
Bst2BI	CACGAG	3 cut(s)	104, 253, 302
Bst4CI	ACNGT	2 cut(s)	28, 69
Bst6I	CTCTTC	2 cut(s)	84, 483
BstACI	GRCGYC	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	2 cut(s)	116, 292
BstHHI	GCGC	2 cut(s)	115, 291
BstKTI	GATC	4 cut(s)	130, 309, 358, 371
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	127, 306, 355, 368
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	1 cut(s)	446
Bsu15I	ATCGAT	1 cut(s)	312
BsuTUI	ATCGAT	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	2 cut(s)	115, 291
Cfr10I	RCCGGY	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	312
CviJI	RGCY	5 cut(s)	10, 92, 380, 440, 510
CviKI_1	RGCY	5 cut(s)	10, 92, 380, 440, 510
DdeI	CTNAG	1 cut(s)	416
DinI	GGCGCC	1 cut(s)	290
DpnI	GATC	4 cut(s)	129, 308, 357, 370
DpnII	GATC	4 cut(s)	127, 306, 355, 368
Eam1104I	CTCTTC	2 cut(s)	84, 483
EarI	CTCTTC	2 cut(s)	84, 483
EciI	GGCGGA	1 cut(s)	509
EgeI	GGCGCC	1 cut(s)	290
EheI	GGCGCC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	191
FaiI	YATR	1 cut(s)	527
FaqI	GGGAC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	111, 481
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	111, 481
GlaI	GCGC	2 cut(s)	114, 290
GluI	GCNGC	2 cut(s)	111, 481
HaeII	RGCGCY	2 cut(s)	116, 292
HapII	CCGG	3 cut(s)	16, 47, 162
HhaI	GCGC	2 cut(s)	115, 291
Hin1I	GRCGYC	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	113, 289
HinP1I	GCGC	2 cut(s)	113, 289
HincII	GTYRAC	2 cut(s)	394, 413
HindII	GTYRAC	2 cut(s)	394, 413
HindIII	AAGCTT	2 cut(s)	8, 378
HinfI	GANTC	4 cut(s)	167, 409, 414, 458
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	3 cut(s)	16, 47, 162
HphI	GGTGA	3 cut(s)	273, 467, 497
Hpy166II	GTNNAC	2 cut(s)	394, 413
Hpy188I	TCNGA	4 cut(s)	269, 360, 463, 543
Hpy188III	TCNNGA	5 cut(s)	131, 190, 302, 372, 384
Hpy8I	GTNNAC	2 cut(s)	394, 413
Hpy99I	CGWCG	2 cut(s)	40, 65
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	2 cut(s)	28, 69
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	1 cut(s)	289
HspAI	GCGC	2 cut(s)	113, 289
KasI	GGCGCC	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	127, 306, 355, 368
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	6 cut(s)	29, 60, 175, 247, 369, 435
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	4 cut(s)	248, 257, 279, 455
MalI	GATC	4 cut(s)	129, 308, 357, 370
MboI	GATC	4 cut(s)	127, 306, 355, 368
MboII	GAAGA	6 cut(s)	71, 215, 335, 352, 355, 500
MluCI	AATT	2 cut(s)	422, 475
Mly113I	GGCGCC	1 cut(s)	289
MlyI	GAGTC	4 cut(s)	161, 408, 418, 452
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	107, 118, 158, 231, 279, 484
MreI	CGCCGGCG	1 cut(s)	46
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	2 cut(s)	69, 379
MseI	TTAA	1 cut(s)	393
MspI	CCGG	3 cut(s)	16, 47, 162
MwoI	GCNNNNNNNGC	1 cut(s)	446
NaeI	GCCGGC	1 cut(s)	48
NarI	GGCGCC	1 cut(s)	289
NdeII	GATC	4 cut(s)	127, 306, 355, 368
NgoMIV	GCCGGC	1 cut(s)	46
NlaIV	GGNNCC	3 cut(s)	25, 290, 511
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	2 cut(s)	279, 455
PcsI	WCGNNNNNNNCGW	5 cut(s)	181, 309, 318, 364, 404
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	2 cut(s)	69, 379
PkrI	GCNGC	2 cut(s)	112, 482
Ple19I	CGATCG	1 cut(s)	371
PleI	GAGTC	4 cut(s)	161, 408, 417, 452
PluTI	GGCGCC	1 cut(s)	292
PpsI	GAGTC	4 cut(s)	161, 408, 417, 452
PspN4I	GGNNCC	3 cut(s)	25, 290, 511
PvuI	CGATCG	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	111, 481
Sau3AI	GATC	4 cut(s)	127, 306, 355, 368
SchI	GAGTC	4 cut(s)	161, 408, 418, 452
SetI	ASST	6 cut(s)	12, 94, 150, 281, 382, 525
SfaNI	GCATC	1 cut(s)	304
SfoI	GGCGCC	1 cut(s)	290
SgrAI	CRCCGGYG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	422, 475
SsiI	CCGC	5 cut(s)	44, 110, 480, 483, 494
SspDI	GGCGCC	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	28, 69
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	4 cut(s)	312, 398, 412, 431
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	422, 475
TauI	GCSGC	2 cut(s)	113, 483
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	279, 455
Tsp45I	GTSAC	2 cut(s)	279, 455
TspDTI	ATGAA	4 cut(s)	17, 20, 353, 523
TspGWI	ACGGA	2 cut(s)	24, 502
TspRI	CASTG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	2 cut(s)	69, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.