Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001275.1

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

115161 .. 115769

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001275.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgaagaagctctacaacaagaaaggcaaggtccacccgtcgccaccgccttcgacacccgacccgttcgccctgcttccggccaccattttgactctgaccaccgccctctctgtccaggaccgagaggtcctcgcctatctgatctcctacaccaacaccaacaacaacaacaacaacaacaattcgaccagcatcaacaccaacaaggccaacgatgcccataaagctggaaatgatcaccctgatcctccgatgtcccagtgcgactgctttaggtgctacaagagcttctgggcacgatgggatgcttcccccaaccggcagctcatacatgaaatcatcgaggcgtacgaggaaaagttggctgagaagaaaaggagaaatcccaaggtgaagaaagtgaggaagaagaaaattgaggaggaaacgaagggtaatattgataatctaccggtcatgaaagaggagctgagtaataatccagaagtggatgtggaaaacagtgatggtgatgaagaaggctgtgaggttgaggttgagaaaggatcctccatgaggaggttggcgagcttcattggggataggatttggggtgtttggaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.97

Weight (kDa)

6.91

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AciI	CCGC	2 cut(s)	47, 105
AclWI	GGATC	3 cut(s)	242, 543, 556
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	4 cut(s)	79, 321, 558, 561
AgeI	ACCGGT	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	10, 230, 291, 328, 472, 573
AluI	AGCT	6 cut(s)	10, 230, 291, 328, 472, 573
AlwI	GGATC	3 cut(s)	242, 543, 556
AoxI	GGCC	2 cut(s)	81, 210
ApeKI	GCWGC	1 cut(s)	325
AsiGI	ACCGGT	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	31, 121, 130
AsuHPI	GGTGA	3 cut(s)	233, 406, 524
AvaII	GGWCC	3 cut(s)	31, 121, 130
BaeGI	GKGCMC	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	548
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	297, 503
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	238
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	3 cut(s)	31, 121, 130
BmgT120I	GGNCC	3 cut(s)	31, 121, 130
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	204, 208, 298
BmuI	ACTGGG	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 321, 558, 561
Bse118I	RCCGGY	2 cut(s)	321, 454
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	313, 499
BseLI	CCNNNNNNNGG	4 cut(s)	79, 321, 558, 561
BseMII	CTCAG	2 cut(s)	360, 464
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	3 cut(s)	437, 482, 574
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	83, 212
BshTI	ACCGGT	1 cut(s)	454
BsiSI	CCGG	3 cut(s)	80, 322, 455
BsiWI	CGTACG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	79, 321, 558, 561
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	83, 212
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	144, 238, 247, 548
BspACI	CCGC	2 cut(s)	47, 105
BspANI	GGCC	2 cut(s)	83, 212
BspCNI	CTCAG	2 cut(s)	361, 465
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	3 cut(s)	242, 543, 556
BsrFI	RCCGGY	2 cut(s)	321, 454
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	2 cut(s)	321, 454
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	144, 238, 247, 548
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	369, 473
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	313, 499
BstKTI	GATC	4 cut(s)	147, 241, 250, 551
BstMBI	GATC	4 cut(s)	144, 238, 247, 548
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 279, 288
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	83, 212
BtsCI	GGATG	2 cut(s)	313, 499
BtsIMutI	CAGTG	2 cut(s)	269, 511
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	459
Cfr10I	RCCGGY	2 cut(s)	321, 454
Cfr13I	GGNCC	3 cut(s)	31, 121, 130
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	454
CviAII	CATG	3 cut(s)	335, 460, 556
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	369, 473
DpnI	GATC	4 cut(s)	146, 240, 249, 550
DpnII	GATC	4 cut(s)	144, 238, 247, 548
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	390
Eco47I	GGWCC	3 cut(s)	31, 121, 130
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	338, 463, 559
FaiI	YATR	5 cut(s)	225, 332, 336, 461, 557
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	334, 459, 555
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	2 cut(s)	320, 506
Fsp4HI	GCNGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	83, 212
HapII	CCGG	3 cut(s)	80, 322, 455
Hin1II	CATG	3 cut(s)	338, 463, 559
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	3 cut(s)	80, 322, 455
HphI	GGTGA	3 cut(s)	233, 406, 524
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	99, 144, 255
Hpy188III	TCNNGA	2 cut(s)	460, 485
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	60, 427, 515
HpyCH4III	ACNGT	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 279, 288
HpyF3I	CTNAG	2 cut(s)	369, 473
Hsp92II	CATG	3 cut(s)	338, 463, 559
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	144, 238, 247, 548
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	3 cut(s)	204, 208, 298
MalI	GATC	4 cut(s)	146, 240, 249, 550
MboI	GATC	4 cut(s)	144, 238, 247, 548
MboII	GAAGA	6 cut(s)	16, 385, 409, 421, 424, 530
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	3 cut(s)	184, 417, 604
MlyI	GAGTC	1 cut(s)	88
MspI	CCGG	3 cut(s)	80, 322, 455
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 279, 288
NdeII	GATC	4 cut(s)	144, 238, 247, 548
NlaIII	CATG	3 cut(s)	338, 463, 559
NlaIV	GGNNCC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
Pfl23II	CGTACG	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspLI	CGTACG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	3 cut(s)	31, 121, 130
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	4 cut(s)	144, 238, 247, 548
Sau96I	GGNCC	3 cut(s)	31, 121, 130
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	3 cut(s)	204, 208, 298
SinI	GGWCC	3 cut(s)	31, 121, 130
Sse9I	AATT	3 cut(s)	184, 417, 604
SsiI	CCGC	2 cut(s)	47, 105
SspI	AATATT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	3 cut(s)	53, 188, 345
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	184, 417, 604
TscAI	CASTG	2 cut(s)	269, 511
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	5 cut(s)	17, 351, 476, 531, 565
TspRI	CASTG	2 cut(s)	269, 511
VpaK11BI	GGWCC	3 cut(s)	31, 121, 130
XagI	CCTNNNNNAGG	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.