Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

21452324 .. 21453725

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAAAAGCTCTACAACAAGAAAGGCAAAGTCCACCCATCTCCATCGCCGCCCTCCATAGCCGATCCTCTGGCTCTGCTTCCCGCAGCCATTCTCACCCTAACCGCAGCCCTCTGTGAAGAAGACAAGCAGGTCCTCGCCTACCTCATCTCCTGCACCAACAACAATAACAACTCAGGCAGCAAATTCTGCACAACCCATGAGCCCAACAGAAGCGGAGGCGAGGCTGGTGGGCCCCGGCCCCACCTGCACCCTCCTCTGTTCCAGTGCGACTGCTTCAGGTGCTACACGAGCTTTTGGGCGCGCTGGGATGCTTCGCCCAATCGCCAGCTGATACATGAGATCATAGAGGCTTATGAGGAGAGGCTGGCGGAGAAGAAGAAGAAGCTGAGGAGCTCAAAGGTGAGGAAGGCAGAGAGAAGGAAGATGAACAAAGTTAGTGATGATGAATTAATTAAAGGCAGCAGGGGAAATGGTCACATGGGTTCTGGGGAATTAGGGCAAGTGATGATGGAGGAGGTGGAGGTGGGCCCAGATGTTGTTGTTGTTGAAATGGACGGTGGTGATTGCTCTGGTGATGATGAAGGCTCTGAAGCCGGGATGGAGAAGGGGACCATGAGGAGGCTGGTGAGTTTCATTGGGGACAGGATTTGGGGTGTTTGGAATAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.81

Weight (kDa)

7.6

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	2 cut(s)	121, 255
AccII	CGCG	1 cut(s)	304
AciI	CCGC	5 cut(s)	50, 84, 105, 216, 371
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	262, 612
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	551
AluBI	AGCT	5 cut(s)	10, 294, 331, 388, 396
AluI	AGCT	5 cut(s)	10, 294, 331, 388, 396
Alw21I	GWGCWC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	233, 239, 529
ApaI	GGGCCC	2 cut(s)	237, 533
ApeKI	GCWGC	4 cut(s)	86, 107, 180, 462
ApoI	RAATTY	1 cut(s)	185
AseI	ATTAAT	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	304, 306
AspS9I	GGNCC	7 cut(s)	133, 233, 234, 240, 529, 530, 612
AsuC2I	CCSGG	2 cut(s)	238, 598
AsuHPI	GGTGA	5 cut(s)	88, 415, 575, 587, 640
AvaII	GGWCC	2 cut(s)	133, 612
BaeGI	GKGCMC	2 cut(s)	237, 533
BanII	GRGCYC	4 cut(s)	207, 237, 398, 533
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	4 cut(s)	98, 119, 192, 474
BccI	CCATC	4 cut(s)	46, 52, 505, 595
BcnI	CCSGG	2 cut(s)	238, 598
BfuAI	ACCTGC	2 cut(s)	121, 255
BisI	GCNGC	5 cut(s)	50, 87, 108, 181, 463
BlsI	GCNGC	5 cut(s)	51, 88, 109, 182, 464
Bme1390I	CCNGG	2 cut(s)	238, 598
Bme18I	GGWCC	2 cut(s)	133, 612
BmgT120I	GGNCC	7 cut(s)	133, 233, 234, 240, 529, 530, 612
BmiI	GGNNCC	5 cut(s)	235, 236, 242, 531, 613
BmrFI	CCNGG	2 cut(s)	238, 598
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	238, 598
BsaJI	CCNNGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	316, 606
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	189, 380
BseNI	ACTGG	1 cut(s)	265
BsePI	GCGCGC	1 cut(s)	302
BseRI	GAGGAG	5 cut(s)	246, 374, 406, 530, 634
BseSI	GKGCMC	2 cut(s)	237, 533
BseXI	GCAGC	4 cut(s)	98, 119, 192, 474
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	3 cut(s)	139, 175, 233
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	3 cut(s)	235, 241, 531
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	238, 597
BslFI	GGGAC	2 cut(s)	625, 656
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	2 cut(s)	625, 656
BsnI	GGCC	3 cut(s)	235, 241, 531
Bsp120I	GGGCCC	2 cut(s)	233, 529
Bsp1286I	GDGCHC	4 cut(s)	207, 237, 398, 533
Bsp143I	GATC	2 cut(s)	64, 342
BspACI	CCGC	5 cut(s)	50, 84, 105, 216, 371
BspANI	GGCC	3 cut(s)	235, 241, 531
BspCNI	CTCAG	2 cut(s)	188, 381
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	5 cut(s)	235, 236, 242, 531, 613
BspMI	ACCTGC	2 cut(s)	121, 255
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	236
BssHII	GCGCGC	1 cut(s)	302
BssMI	GATC	2 cut(s)	64, 342
BssSI	CACGAG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	304, 329, 369
BstDEI	CTNAG	3 cut(s)	175, 389, 672
BstF5I	GGATG	2 cut(s)	316, 606
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	304, 306
BstKTI	GATC	2 cut(s)	67, 345
BstMBI	GATC	2 cut(s)	64, 342
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 247, 282, 291
BstSCI	CCNGG	2 cut(s)	236, 596
BstSLI	GKGCMC	2 cut(s)	237, 533
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	4 cut(s)	98, 119, 192, 474
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	235, 241, 531
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	316, 606
BtsIMutI	CAGTG	1 cut(s)	272
BveI	ACCTGC	2 cut(s)	121, 255
Cac8I	GCNNGC	3 cut(s)	304, 329, 369
CfoI	GCGC	2 cut(s)	304, 306
Cfr13I	GGNCC	7 cut(s)	133, 233, 234, 240, 529, 530, 612
CviAII	CATG	4 cut(s)	200, 338, 481, 616
DdeI	CTNAG	3 cut(s)	175, 389, 672
DpnI	GATC	2 cut(s)	66, 344
DpnII	GATC	2 cut(s)	64, 342
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	4 cut(s)	207, 237, 398, 533
Eco47I	GGWCC	2 cut(s)	133, 612
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	262, 612
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	133, 234
EcoT38I	GRGCYC	4 cut(s)	207, 237, 398, 533
FaeI	CATG	4 cut(s)	203, 341, 484, 619
FaiI	YATR	7 cut(s)	59, 201, 339, 347, 357, 482, 617
FaqI	GGGAC	2 cut(s)	625, 656
FatI	CATG	4 cut(s)	199, 337, 480, 615
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	50, 87, 108, 181, 463
FokI	GGATG	2 cut(s)	323, 613
FriOI	GRGCYC	4 cut(s)	207, 237, 398, 533
Fsp4HI	GCNGC	5 cut(s)	50, 87, 108, 181, 463
GlaI	GCGC	2 cut(s)	303, 305
GluI	GCNGC	5 cut(s)	50, 87, 108, 181, 463
GsaI	CCCAGC	1 cut(s)	310
HaeIII	GGCC	3 cut(s)	235, 241, 531
HapII	CCGG	2 cut(s)	238, 597
HhaI	GCGC	2 cut(s)	304, 306
Hin1II	CATG	4 cut(s)	203, 341, 484, 619
Hin6I	GCGC	2 cut(s)	302, 304
HinP1I	GCGC	2 cut(s)	302, 304
HpaII	CCGG	2 cut(s)	238, 597
HphI	GGTGA	5 cut(s)	88, 415, 575, 587, 640
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	592
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	403, 414, 578, 601
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4V	TGCA	3 cut(s)	156, 192, 250
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 247, 282, 291
HpyF3I	CTNAG	3 cut(s)	175, 389, 672
Hsp92II	CATG	4 cut(s)	203, 341, 484, 619
HspAI	GCGC	2 cut(s)	302, 304
Kzo9I	GATC	2 cut(s)	64, 342
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	4 cut(s)	98, 119, 192, 474
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	66, 344
MboI	GATC	2 cut(s)	64, 342
MboII	GAAGA	6 cut(s)	131, 134, 388, 391, 394, 436
MhlI	GDGCHC	4 cut(s)	207, 237, 398, 533
MluCI	AATT	4 cut(s)	185, 449, 453, 494
MseI	TTAA	2 cut(s)	452, 456
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	2 cut(s)	238, 597
MspR9I	CCNGG	2 cut(s)	238, 598
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	4 cut(s)	189, 247, 282, 291
NciI	CCSGG	2 cut(s)	238, 598
NdeII	GATC	2 cut(s)	64, 342
NlaIII	CATG	4 cut(s)	203, 341, 484, 619
NlaIV	GGNNCC	5 cut(s)	235, 236, 242, 531, 613
NmuCI	GTSAC	1 cut(s)	476
PacI	TTAATTAA	1 cut(s)	456
PaqCI	CACCTGC	1 cut(s)	255
PauI	GCGCGC	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	51, 88, 109, 182, 464
PpuMI	RGGWCCY	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	5 cut(s)	235, 236, 242, 531, 613
PspOMI	GGGCCC	2 cut(s)	233, 529
PspPI	GGNCC	7 cut(s)	133, 233, 234, 240, 529, 530, 612
PspPPI	RGGWCCY	1 cut(s)	133
PteI	GCGCGC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	452, 456
SatI	GCNGC	5 cut(s)	50, 87, 108, 181, 463
Sau3AI	GATC	2 cut(s)	64, 342
Sau96I	GGNCC	7 cut(s)	133, 233, 234, 240, 529, 530, 612
ScrFI	CCNGG	2 cut(s)	238, 598
SduI	GDGCHC	4 cut(s)	207, 237, 398, 533
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	2 cut(s)	133, 612
Sse9I	AATT	4 cut(s)	185, 449, 453, 494
SsiI	CCGC	5 cut(s)	50, 84, 105, 216, 371
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	236, 596
TaaI	ACNGT	1 cut(s)	560
TasI	AATT	4 cut(s)	185, 449, 453, 494
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	452, 456
Tru9I	TTAA	2 cut(s)	452, 456
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	4 cut(s)	86, 107, 180, 462
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	5 cut(s)	17, 443, 462, 597, 625
TspRI	CASTG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	133, 612
VspI	ATTAAT	1 cut(s)	452
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.