Rmu_sc0005595.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005595.1
OG0003154
Physical Location & Seq
Forward (+)
1577 .. 2266
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005595.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atgaagaagctgtaccgcagaggcacggttcatccgtcaccgccaaccgtgtccgaccacctgtccttccttcccgccaccatcctcgccctcgcggccgccctgtccctcgaggacagggaggtcctggcttacctcatctcctgctccaacactaacaacgtcaacttaacatcctcaccctcctcacgtaagactactaccacaaccgccaccaacagcagcaacaaaaagagttccgccgccaaaagaggcggcggaagcggcggcggggaccacccggcgcggttcaactgcagctgcttcaggtgctacacgagttactgggtcagatgggacgagtcgccgaatcgagaactgatccatgagatcatcgatgcttttgaagatgagctactttcatctcagagtggcagtagtagtaaagcggctgggtcgaagtatggtaagaaggacaagaggcaccataacaagagaggaaacagtggtaacgggccgggtcaaggatcggagttgagtctgaagaagaaggatcagatggtgaagcctaacatggtggaggagactaatagtagtagtaacagtactgactcgggtgatcttgatggtgatgaggaaagcaagggatcggtgagaagatttgtgagctttcttggagagaggatatggggtggtgtctggagccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.85

Weight (kDa)

9.14

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AbsI CCTCGAGG 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 462
AccII CGCG 2 cut(s) 95, 286
AclWI GGATC 4 cut(s) 355, 514, 540, 634
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 289, 542
AfaI GTAC 2 cut(s) 14, 586
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 2 cut(s) 292, 386
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 10, 300, 394, 648
AluI AGCT 4 cut(s) 10, 300, 394, 648
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 4 cut(s) 355, 514, 540, 634
Ama87I CYCGRG 2 cut(s) 110, 592
AoxI GGCC 2 cut(s) 96, 494
ApeKI GCWGC 3 cut(s) 222, 297, 300
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 124, 274, 494
AsuC2I CCSGG 2 cut(s) 281, 498
AsuHPI GGTGA 6 cut(s) 30, 171, 553, 608, 620, 643
AvaI CYCGRG 2 cut(s) 110, 592
AvaII GGWCC 2 cut(s) 124, 274
BanI GGYRCC 1 cut(s) 462
BarI GAAGNNNNNNTAC 3 cut(s) 28, 378, 410
BauI CACGAG 1 cut(s) 316
BbvI GCAGC 3 cut(s) 234, 287, 309
BccI CCATC 4 cut(s) 89, 327, 532, 599
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 2 cut(s) 281, 498
BcoDI GTCTC 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 128, 281, 498
Bme18I GGWCC 2 cut(s) 124, 274
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 2 cut(s) 110, 592
BmgT120I GGNCC 3 cut(s) 124, 274, 494
BmiI GGNNCC 3 cut(s) 275, 464, 683
BmrFI CCNGG 3 cut(s) 128, 281, 498
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 334
BpuMI CCSGG 2 cut(s) 281, 498
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 329, 685
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 3 cut(s) 31, 81, 173
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 329, 685
BseRI GAGGAG 2 cut(s) 175, 575
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 234, 287, 309
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 2 cut(s) 95, 286
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 98, 496
BshNI GGYRCC 1 cut(s) 462
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 110, 592
BsiSI CCGG 2 cut(s) 281, 497
BslFI GGGAC 3 cut(s) 91, 287, 350
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 3 cut(s) 91, 287, 350
BsnI GGCC 2 cut(s) 98, 496
BsoBI CYCGRG 2 cut(s) 110, 592
Bsp143I GATC 6 cut(s) 360, 369, 506, 532, 598, 626
BspANI GGCC 2 cut(s) 98, 496
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 2 cut(s) 95, 286
BspLI GGNNCC 3 cut(s) 275, 464, 683
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 4 cut(s) 355, 514, 540, 634
BspT107I GGYRCC 1 cut(s) 462
BsrI ACTGG 2 cut(s) 329, 685
BssMI GATC 6 cut(s) 360, 369, 506, 532, 598, 626
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 28, 49, 485, 584
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 31, 81, 173
BstFNI CGCG 2 cut(s) 95, 286
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 6 cut(s) 363, 372, 509, 535, 601, 629
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 6 cut(s) 360, 369, 506, 532, 598, 626
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 126, 279, 496
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 2 cut(s) 95, 286
BstV1I GCAGC 3 cut(s) 234, 287, 309
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 98, 496
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 3 cut(s) 31, 81, 173
BtsIMutI CAGTG 1 cut(s) 490
CciNI GCGGCCGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 124, 274, 494
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 2 cut(s) 13, 585
CviAII CATG 2 cut(s) 365, 553
CviQI GTAC 2 cut(s) 13, 585
DdeI CTNAG 1 cut(s) 405
DpnI GATC 6 cut(s) 362, 371, 508, 534, 600, 628
DpnII GATC 6 cut(s) 360, 369, 506, 532, 598, 626
DrdI GACNNNNNNGTC 1 cut(s) 122
DriI GACNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 229, 273
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 124, 274
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 289, 542
Eco88I CYCGRG 2 cut(s) 110, 592
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 368, 556
FaiI YATR 5 cut(s) 366, 444, 468, 554, 667
FaqI GGGAC 3 cut(s) 91, 287, 350
FatI CATG 2 cut(s) 364, 552
FauI CCCGC 2 cut(s) 82, 263
FokI GGATG 3 cut(s) 18, 68, 160
GlaI GCGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 2 cut(s) 98, 496
HapII CCGG 2 cut(s) 281, 497
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 368, 556
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 4 cut(s) 341, 349, 517, 590
HpaII CCGG 2 cut(s) 281, 497
HphI GGTGA 6 cut(s) 30, 171, 553, 608, 620, 643
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 6 cut(s) 55, 332, 408, 511, 522, 537
Hpy188III TCNNGA 3 cut(s) 353, 602, 679
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 76, 80, 445, 523
HpyCH4III ACNGT 4 cut(s) 28, 49, 485, 584
HpyCH4IV ACGT 2 cut(s) 162, 190
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 162, 190
Hsp92II CATG 2 cut(s) 368, 556
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 6 cut(s) 360, 369, 506, 532, 598, 626
LmnI GCTCC 2 cut(s) 152, 681
Lsp1109I GCAGC 3 cut(s) 234, 287, 309
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 162, 190
MaeIII GTNAC 4 cut(s) 36, 320, 488, 578
MalI GATC 6 cut(s) 362, 371, 508, 534, 600, 628
MboI GATC 6 cut(s) 360, 369, 506, 532, 598, 626
MboII GAAGA 5 cut(s) 16, 398, 535, 538, 648
MlyI GAGTC 3 cut(s) 350, 526, 584
MmeI TCCRAC 2 cut(s) 78, 174
MseI TTAA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 2 cut(s) 281, 497
MspR9I CCNGG 3 cut(s) 128, 281, 498
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 95, 286
MwoI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
NciI CCSGG 2 cut(s) 281, 498
NdeII GATC 6 cut(s) 360, 369, 506, 532, 598, 626
NlaIII CATG 2 cut(s) 368, 556
NlaIV GGNNCC 3 cut(s) 275, 464, 683
NmuCI GTSAC 1 cut(s) 36
NotI GCGGCCGC 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 349
PleI GAGTC 3 cut(s) 349, 525, 584
PpsI GAGTC 3 cut(s) 349, 525, 584
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 275, 464, 683
PspPI GGNCC 3 cut(s) 124, 274, 494
PspPPI RGGWCCY 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 14, 586
RsaNI GTAC 2 cut(s) 13, 585
SaqAI TTAA 1 cut(s) 170
Sau3AI GATC 6 cut(s) 360, 369, 506, 532, 598, 626
Sau96I GGNCC 3 cut(s) 124, 274, 494
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 3 cut(s) 350, 526, 584
ScrFI CCNGG 3 cut(s) 128, 281, 498
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 124, 274
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 126, 279, 496
TaaI ACNGT 4 cut(s) 28, 49, 485, 584
TaiI ACGT 2 cut(s) 165, 193
TaqI TCGA 4 cut(s) 111, 352, 375, 437
TatI WGTACW 1 cut(s) 584
TauI GCSGC 7 cut(s) 98, 101, 245, 258, 267, 270, 431
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 222, 297, 300
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 17, 20, 390
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 124, 274
XhoI CTCGAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.