Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Forward (+)

32810647 .. 32811799

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGAAGCTCTACAACAAGAAAGGCAAGGTCCACCCGTCGCCACCTCCTTCGACACCCGACCCGTTCGCCCTTCTTCCGGCCACCATTCTGACTCTGACCACCGCTCTCTCCGTCCAGGACCGAGAAGTCCTCTCCTATCTCATCTCCTACACCAACAACAACTCGACCAATATCTACACCAGCAAGAAGGCTAGGGTATCCCATGAAGCTGGAAAAGACCACCCTGACCCTCCGATGTCCCAGTGCGACTGCTTTAGGTGCTACACGAGCTTCTGGGCACGATGGGATGCATCCCCCAACCGGCAGCTCATACATGAAATCATCGAGGCGTACGAGGAAAAGTTGGCTGAGAAGAAGAGGAGAAATCCCAAGGTAAAGAAAGTGAGGAAGAATAAAGTTGAGGAGGAAATTACCAAGGGTAATAATATGGATAACCTACCCGCCATGAAAGAGGAGCTAGATAATAATCCAGAAGTGGATGTGGAAAGTTGCGATGGTGATGAAGAAGAAGGCCGTGGGGTTGAGATTGAGAAAGCCTCCATGAGGAGCAGGCTGGATAAGAGACGGTGGACTGTGATCGAGCTGAAGTTGAAATCGTCAGACGTCAATGTTCATGGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.87

Weight (kDa)

8.56

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	2 cut(s)	105, 444
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	79, 303, 546
AgsI	TTSAA	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	10, 212, 273, 310, 460, 586
AluI	AGCT	6 cut(s)	10, 212, 273, 310, 460, 586
Alw26I	GTCTC	1 cut(s)	559
AoxI	GGCC	2 cut(s)	81, 514
ApeKI	GCWGC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	31, 121
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	31, 121
BaeGI	GKGCMC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	279, 491
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	2 cut(s)	195, 461
BfoI	RGCGCY	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	31, 121
BmgT120I	GGNCC	2 cut(s)	31, 121
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	280, 302
BmuI	ACTGGG	1 cut(s)	238
BplI	GAGNNNNNCTC	4 cut(s)	117, 149, 524, 556
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	372, 417, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 303, 546
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	372, 417, 517
BseGI	GGATG	3 cut(s)	293, 295, 487
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	79, 303, 546
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	4 cut(s)	376, 419, 470, 562
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	2 cut(s)	83, 516
BsiSI	CCGG	2 cut(s)	80, 304
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	79, 303, 546
BsmAI	GTCTC	1 cut(s)	559
BsmBI	CGTCTC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	83, 516
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	579
BspACI	CCGC	2 cut(s)	105, 444
BspANI	GGCC	2 cut(s)	83, 516
BspCNI	CTCAG	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	372, 417, 517
BssMI	GATC	1 cut(s)	579
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	372, 417
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	570, 577
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	517
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	293, 295, 487
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 270
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	83, 516
BtgI	CCRYGG	1 cut(s)	517
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	293, 295, 487
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	554
CfoI	GCGC	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	31, 121
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	206, 317, 448, 544, 617
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	372, 417
Eco47I	GGWCC	2 cut(s)	31, 121
Eco57I	CTGAAG	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	372, 417
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	372, 417
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	5 cut(s)	209, 320, 451, 547, 620
FaiI	YATR	7 cut(s)	207, 314, 318, 431, 449, 545, 618
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	205, 316, 447, 543, 616
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	3 cut(s)	280, 302, 494
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	2 cut(s)	195, 461
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	2 cut(s)	83, 516
HapII	CCGG	2 cut(s)	80, 304
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	5 cut(s)	209, 320, 451, 547, 620
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	80, 304
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	34, 573
Hpy188I	TCNGA	4 cut(s)	93, 99, 237, 604
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	34, 573
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	60, 83, 184, 506
HpyCH4III	ACNGT	2 cut(s)	570, 577
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 270
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	606
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	5 cut(s)	209, 320, 451, 547, 620
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	457, 549
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	280, 302
MaeI	CTAG	2 cut(s)	195, 461
MaeII	ACGT	1 cut(s)	606
MalI	GATC	1 cut(s)	581
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	1 cut(s)	579
MboII	GAAGA	7 cut(s)	16, 68, 367, 370, 403, 518, 521
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	295
MspI	CCGG	2 cut(s)	80, 304
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	261, 270
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	5 cut(s)	209, 320, 451, 547, 620
NsiI	ATGCAT	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
Pfl23II	CGTACG	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspLI	CGTACG	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	31, 121
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	2 cut(s)	31, 121
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	280, 302
SinI	GGWCC	2 cut(s)	31, 121
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	105, 444
SspMI	CTAG	2 cut(s)	195, 461
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	372, 417
TaaI	ACNGT	2 cut(s)	570, 577
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	4 cut(s)	53, 167, 327, 582
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	411
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	6 cut(s)	17, 222, 333, 464, 519, 605
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	31, 121
XagI	CCTNNNNNAGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	195, 461
ZraI	GACGTC	1 cut(s)	607
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.