Rorug04G0391900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003154
Physical Location & Seq
Forward (+)
55920772 .. 55921683
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0391900.1

Sequence Viewer

Length: 912 bp
ATGAACTCATCCCAACTTGCATCCCTGGAAGTGGAAAGAATCCGACCTTACCCTCGAAAATTCGAAGATTTCGTAATGGCCCAGATCAAGCACCTCACACTCGCTGTTGGCCCACGAAGCCCACCGTTTAAAGTCCAACACAATGCTCCGGTCCTAGTATTCGCTGCCGGTGGATACACCGGAAACTTTTGGCATGACTTCAATGATGGATTTATCCCGCTCTTTATCACCGCCAACACACTCTTCCCAGATCAAGACTTCGTGATCGTGGTTTCCCAAGCTCCAAAGTGGTGGGTTTATAAGTATGCCGATTTACTACCCTTATTCACCAAGCACCCTATTATTACCATGGGAAATGATGCCACCACCCATTGTTTTCCTTCTGCCAATCTAGGCCTTATATCACATGGTTTCATGACTATAAACCAAACACTAATACCTCGTGCAAAAACGTTTCTGCATTTTCGTGGGCTCCTAGACAACGCATATAAGCGAAGGTCCCAACCTCAAATTCTCTCCTCTGATCAGCAGACAAAACCCCGGCCACGCCTTGTTTTGGCGAGCCGGAATCATGCAACTGGACGCAGGATCGTTAACCAGGTTCAAGTAGTTCGTTTGGTAAAGAAAGTGGGGTTTGATGTGATTGTGTTTGAGCCTAAGGCCAATAACTCATTGCATGAGTCTTATGCGTTACTTAATTCAAGCCATGCTTTTGTTGGGGTACATGGCGCTGCACTTACACACTCATTGTTCCTCCGGCCGGGTTCAGTGTTCGTACAGGTGGTGCCGATTGGGGTGGACTGGGCGGCGAATGCATGTTTCAGGGGAGTGGCGAAGGGGCTGAGGTTGGAGTATTTTGAGTACAAGATCGGAGTGAAAGAGAGTAGCTTGGTGGACGTACAAGTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.07

Weight (kDa)

9.82

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 93 - 259 1.4e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 784
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 3 cut(s) 218, 231, 806
AclI AACGTT 1 cut(s) 452
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 2 cut(s) 542, 758
AcsI RAATTY 2 cut(s) 59, 510
AfaI GTAC 4 cut(s) 723, 777, 863, 900
AfiI CCNNNNNNNGG 3 cut(s) 31, 556, 760
AgsI TTSAA 3 cut(s) 202, 605, 702
AjnI CCWGG 2 cut(s) 24, 597
AjuI GAANNNNNNNTTGG 4 cut(s) 227, 259, 495, 527
AluBI AGCT 2 cut(s) 281, 888
AluI AGCT 2 cut(s) 281, 888
AlwI GGATC 1 cut(s) 596
AoxI GGCC 6 cut(s) 78, 109, 394, 542, 660, 758
ApeKI GCWGC 2 cut(s) 164, 731
ApoI RAATTY 2 cut(s) 59, 510
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 4 cut(s) 79, 110, 151, 498
AsuC2I CCSGG 2 cut(s) 541, 762
AsuHPI GGTGA 2 cut(s) 220, 319
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 2 cut(s) 151, 498
AxyI CCTNAGG 1 cut(s) 657
BanI GGYRCC 1 cut(s) 784
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 842
BbvI GCAGC 2 cut(s) 151, 718
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 26, 599
BciVI GTATCC 1 cut(s) 167
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 2 cut(s) 541, 762
BfaI CTAG 3 cut(s) 155, 392, 476
BfoI RGCGCY 1 cut(s) 732
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 3 cut(s) 165, 732, 807
BlsI GCNGC 3 cut(s) 166, 733, 808
Bme1390I CCNGG 4 cut(s) 26, 541, 599, 762
Bme18I GGWCC 2 cut(s) 151, 498
BmgT120I GGNCC 4 cut(s) 79, 110, 151, 498
BmiI GGNNCC 3 cut(s) 473, 500, 786
BmrFI CCNGG 4 cut(s) 26, 541, 599, 762
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 2 cut(s) 29, 349
BmuI ACTGGG 1 cut(s) 811
Bpu10I CCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 541, 762
BsaJI CCNNGG 3 cut(s) 24, 348, 539
BsaWI WCCGGW 2 cut(s) 148, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 556, 760
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 583, 806
Bse21I CCTNAGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 671
BseBI CCWGG 2 cut(s) 26, 599
BseDI CCNNGG 3 cut(s) 24, 348, 539
BseGI GGATG 2 cut(s) 8, 20
BseLI CCNNNNNNNGG 3 cut(s) 31, 556, 760
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 2 cut(s) 583, 806
BseRI GAGGAG 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 758
BseXI GCAGC 2 cut(s) 151, 718
BsgI GTGCAG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 761
BshFI GGCC 6 cut(s) 80, 111, 396, 544, 662, 760
BshNI GGYRCC 1 cut(s) 784
BsiEI CGRYCG 1 cut(s) 761
BsiSI CCGG 7 cut(s) 149, 168, 180, 541, 565, 757, 761
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 3 cut(s) 31, 556, 760
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 6 cut(s) 80, 111, 396, 544, 662, 760
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 6 cut(s) 84, 250, 264, 523, 588, 867
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 3 cut(s) 218, 231, 806
BspANI GGCC 6 cut(s) 80, 111, 396, 544, 662, 760
BspCNI CTCAG 1 cut(s) 834
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 473, 500, 786
BspPI GGATC 1 cut(s) 596
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 583, 806
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 24, 348, 539
BssMI GATC 6 cut(s) 84, 250, 264, 523, 588, 867
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 26, 599
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 2 cut(s) 657, 842
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 8, 20
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 6 cut(s) 87, 253, 267, 526, 591, 870
BstMBI GATC 6 cut(s) 84, 250, 264, 523, 588, 867
BstMCI CGRYCG 1 cut(s) 761
BstMWI GCNNNNNNNGC 2 cut(s) 117, 812
BstNI CCWGG 2 cut(s) 26, 599
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 4 cut(s) 24, 539, 597, 760
BstV1I GCAGC 2 cut(s) 151, 718
BstXI CCANNNNNNTGG 1 cut(s) 291
BstZI CGGCCG 1 cut(s) 758
Bsu36I CCTNAGG 1 cut(s) 657
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 6 cut(s) 80, 111, 396, 544, 662, 760
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 8, 20
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 1 cut(s) 414
CfoI GCGC 1 cut(s) 731
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 79, 110, 151, 498
CseI GACGC 1 cut(s) 591
CsiI ACCWGGT 1 cut(s) 597
Csp6I GTAC 4 cut(s) 722, 776, 862, 899
CviAII CATG 9 cut(s) 194, 349, 407, 415, 572, 677, 707, 725, 816
CviQI GTAC 4 cut(s) 722, 776, 862, 899
DdeI CTNAG 2 cut(s) 657, 842
DpnI GATC 6 cut(s) 86, 252, 266, 525, 590, 869
DpnII GATC 6 cut(s) 84, 250, 264, 523, 588, 867
DraI TTTAAA 1 cut(s) 130
EaeI YGGCCR 2 cut(s) 542, 758
EagI CGGCCG 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 151, 498
Eco52I CGGCCG 1 cut(s) 758
Eco81I CCTNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 24, 597
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 9 cut(s) 197, 352, 410, 418, 575, 680, 710, 728, 819
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 1 cut(s) 484
FatI CATG 9 cut(s) 193, 348, 406, 414, 571, 676, 706, 724, 815
FauI CCCGC 1 cut(s) 225
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 165, 732, 807
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 165, 732, 807
FspBI CTAG 3 cut(s) 155, 392, 476
GlaI GCGC 1 cut(s) 730
GluI GCNGC 3 cut(s) 165, 732, 807
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 6 cut(s) 80, 111, 396, 544, 662, 760
HapII CCGG 7 cut(s) 149, 168, 180, 541, 565, 757, 761
HgaI GACGC 1 cut(s) 591
HhaI GCGC 1 cut(s) 731
Hin1II CATG 9 cut(s) 197, 352, 410, 418, 575, 680, 710, 728, 819
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 3 cut(s) 39, 568, 680
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 7 cut(s) 149, 168, 180, 541, 565, 757, 761
HphI GGTGA 2 cut(s) 220, 319
Hpy166II GTNNAC 3 cut(s) 595, 799, 895
Hpy188I TCNGA 3 cut(s) 44, 523, 872
Hpy188III TCNNGA 3 cut(s) 254, 262, 415
Hpy8I GTNNAC 3 cut(s) 595, 799, 895
HpyAV CCTTC 3 cut(s) 390, 489, 829
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 452, 897
HpyCH4V TGCA 7 cut(s) 20, 446, 460, 575, 676, 734, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 812
HpyF3I CTNAG 2 cut(s) 657, 842
HpySE526I ACGT 2 cut(s) 452, 897
Hsp92II CATG 9 cut(s) 197, 352, 410, 418, 575, 680, 710, 728, 819
HspAI GCGC 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 523
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 6 cut(s) 84, 250, 264, 523, 588, 867
LmnI GCTCC 3 cut(s) 151, 286, 477
Lsp1109I GCAGC 2 cut(s) 151, 718
LweI GCATC 2 cut(s) 29, 349
MabI ACCWGGT 1 cut(s) 597
MaeI CTAG 3 cut(s) 155, 392, 476
MaeII ACGT 2 cut(s) 452, 897
MaeIII GTNAC 1 cut(s) 690
MalI GATC 6 cut(s) 86, 252, 266, 525, 590, 869
MbiI CCGCTC 1 cut(s) 220
MboI GATC 6 cut(s) 84, 250, 264, 523, 588, 867
MboII GAAGA 2 cut(s) 77, 235
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 3 cut(s) 59, 510, 697
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 3 cut(s) 67, 160, 828
MnlI CCTC 7 cut(s) 63, 104, 450, 516, 529, 764, 837
Mph1103I ATGCAT 1 cut(s) 817
MseI TTAA 3 cut(s) 129, 594, 696
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 7 cut(s) 149, 168, 180, 541, 565, 757, 761
MspR9I CCNGG 4 cut(s) 26, 541, 599, 762
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 2 cut(s) 26, 599
MwoI GCNNNNNNNGC 2 cut(s) 117, 812
NciI CCSGG 2 cut(s) 541, 762
NcoI CCATGG 1 cut(s) 348
NdeII GATC 6 cut(s) 84, 250, 264, 523, 588, 867
NlaIII CATG 9 cut(s) 197, 352, 410, 418, 575, 680, 710, 728, 819
NlaIV GGNNCC 3 cut(s) 473, 500, 786
NsiI ATGCAT 1 cut(s) 817
NspI RCATGY 1 cut(s) 819
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 414
PceI AGGCCT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 2 cut(s) 39, 568
PkrI GCNGC 3 cut(s) 166, 733, 808
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 498
PsiI TTATAA 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 24, 597
PspGI CCWGG 2 cut(s) 24, 597
PspN4I GGNNCC 3 cut(s) 473, 500, 786
PspPI GGNCC 4 cut(s) 79, 110, 151, 498
PspPPI RGGWCCY 1 cut(s) 498
RsaI GTAC 4 cut(s) 723, 777, 863, 900
RsaNI GTAC 4 cut(s) 722, 776, 862, 899
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 3 cut(s) 129, 594, 696
SatI GCNGC 3 cut(s) 165, 732, 807
Sau3AI GATC 6 cut(s) 84, 250, 264, 523, 588, 867
Sau96I GGNCC 4 cut(s) 79, 110, 151, 498
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 4 cut(s) 26, 541, 599, 762
SduI GDGCHC 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 597
SfaNI GCATC 2 cut(s) 29, 349
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 2 cut(s) 151, 498
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 3 cut(s) 59, 510, 697
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 3 cut(s) 218, 231, 806
SspMI CTAG 3 cut(s) 155, 392, 476
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 24, 539, 597, 760
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 2 cut(s) 455, 900
TaqI TCGA 2 cut(s) 55, 63
TasI AATT 3 cut(s) 59, 510, 697
TatI WGTACW 1 cut(s) 861
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 2 cut(s) 39, 568
Tru1I TTAA 3 cut(s) 129, 594, 696
Tru9I TTAA 3 cut(s) 129, 594, 696
TscAI CASTG 1 cut(s) 774
TseI GCWGC 2 cut(s) 164, 731
TspDTI ATGAA 2 cut(s) 17, 403
TspRI CASTG 1 cut(s) 774
VpaK11BI GGWCC 2 cut(s) 151, 498
XapI RAATTY 2 cut(s) 59, 510
XceI RCATGY 1 cut(s) 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XspI CTAG 3 cut(s) 155, 392, 476
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.