RchiOBHm_Chr2g0157771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003154
Physical Location & Seq
Forward (+)
74099384 .. 74100191
808 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52649

Sequence Viewer

Length: 606 bp
ATGAAGAAGCTCTACAACAAGAAAGGCAAGGTCCACCCGTCGCCACCGCCTTCGACACCCGACCCGTTCGCCCTGCTTCCGGCCACCATTTTGACTCTGACCACCGCCCTCTCTGTCCAGGACCGAGAGGTCCTCGCCTATCTGATCTCCTACACCAACACCAACAACAACAACAACAACAATTCGACCAGCATCAACACCAACAAGGCCAACGATGCCCATAAAGCTGGAAATGATCACCCTGATCCTCCGATGTCCCAGTGCGACTGCTTTAGGTGCTACAAGAGCTTCTGGGCACGATGGGATGCTTCCCCCAACCGGCAGCTCATACATGAAATCATCGAGGCGTACGAGGAAAAGTTGGCTGAGAAGAAAAGGAGAAATCCCAAGGTGAAGAAAGTGAGGAAGAAGAAAATTGAGGAGGAAACGAAGGGTAATATTGATAATCTACCGGTCATGAAAGAGGAGCTGAGTAATAATCCAGAAGTGGATGTGGAAAACAGTGATGGTGATGAAGAAGGCTGTGAGGTTGAGGTTGAGAAAGGATCCTCCATGAGGAGGTTGGCGAGCTTCATTGGGGATAGGATTTGGGGTGTTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.86

Weight (kDa)

6.91

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AciI CCGC 2 cut(s) 47, 105
AclWI GGATC 3 cut(s) 239, 540, 553
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 79, 318, 555, 558
AgeI ACCGGT 1 cut(s) 451
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 6 cut(s) 10, 227, 288, 325, 469, 570
AluI AGCT 6 cut(s) 10, 227, 288, 325, 469, 570
AlwI GGATC 3 cut(s) 239, 540, 553
AoxI GGCC 2 cut(s) 81, 207
ApeKI GCWGC 1 cut(s) 322
AsiGI ACCGGT 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 31, 121, 130
AsuHPI GGTGA 3 cut(s) 230, 403, 521
AvaII GGWCC 3 cut(s) 31, 121, 130
BaeGI GKGCMC 1 cut(s) 298
BamHI GGATCC 1 cut(s) 545
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 294, 500
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 235
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 3 cut(s) 31, 121, 130
BmgT120I GGNCC 3 cut(s) 31, 121, 130
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 3 cut(s) 201, 205, 295
BmuI ACTGGG 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BsaJI CCNNGG 1 cut(s) 387
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 318, 555, 558
Bse118I RCCGGY 2 cut(s) 318, 451
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 310, 496
BseLI CCNNNNNNNGG 4 cut(s) 79, 318, 555, 558
BseMII CTCAG 2 cut(s) 357, 461
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 3 cut(s) 434, 479, 571
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 2 cut(s) 83, 209
BshTI ACCGGT 1 cut(s) 451
BsiSI CCGG 3 cut(s) 80, 319, 452
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 4 cut(s) 79, 318, 555, 558
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 2 cut(s) 83, 209
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 144, 235, 244, 545
BspACI CCGC 2 cut(s) 47, 105
BspANI GGCC 2 cut(s) 83, 209
BspCNI CTCAG 2 cut(s) 358, 462
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 547
BspPI GGATC 3 cut(s) 239, 540, 553
BsrFI RCCGGY 2 cut(s) 318, 451
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 2 cut(s) 318, 451
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 144, 235, 244, 545
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 2 cut(s) 366, 470
BstENI CCTNNNNNAGG 1 cut(s) 553
BstF5I GGATG 2 cut(s) 310, 496
BstKTI GATC 4 cut(s) 147, 238, 247, 548
BstMBI GATC 4 cut(s) 144, 235, 244, 545
BstMWI GCNNNNNNNGC 4 cut(s) 215, 224, 276, 285
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 545
BsuRI GGCC 2 cut(s) 83, 209
BtsCI GGATG 2 cut(s) 310, 496
BtsIMutI CAGTG 2 cut(s) 266, 508
Cac8I GCNNGC 1 cut(s) 568
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 2 cut(s) 318, 451
Cfr13I GGNCC 3 cut(s) 31, 121, 130
Csp6I GTAC 1 cut(s) 349
CspAI ACCGGT 1 cut(s) 451
CviAII CATG 3 cut(s) 332, 457, 553
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 366, 470
DpnI GATC 4 cut(s) 146, 237, 246, 547
DpnII GATC 4 cut(s) 144, 235, 244, 545
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 3 cut(s) 31, 121, 130
EcoNI CCTNNNNNAGG 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 3 cut(s) 335, 460, 556
FaiI YATR 5 cut(s) 222, 329, 333, 458, 554
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 331, 456, 552
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 2 cut(s) 317, 503
Fsp4HI GCNGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 83, 209
HapII CCGG 3 cut(s) 80, 319, 452
Hin1II CATG 3 cut(s) 335, 460, 556
HinfI GANTC 1 cut(s) 94
HpaII CCGG 3 cut(s) 80, 319, 452
HphI GGTGA 3 cut(s) 230, 403, 521
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 99, 144, 252
Hpy188III TCNNGA 2 cut(s) 457, 482
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 60, 424, 512
HpyCH4III ACNGT 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 224, 276, 285
HpyF3I CTNAG 2 cut(s) 366, 470
Hsp92II CATG 3 cut(s) 335, 460, 556
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 4 cut(s) 144, 235, 244, 545
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 3 cut(s) 201, 205, 295
MalI GATC 4 cut(s) 146, 237, 246, 547
MboI GATC 4 cut(s) 144, 235, 244, 545
MboII GAAGA 6 cut(s) 16, 382, 406, 418, 421, 527
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 181, 414, 601
MlyI GAGTC 1 cut(s) 88
MspI CCGG 3 cut(s) 80, 319, 452
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 215, 224, 276, 285
NdeII GATC 4 cut(s) 144, 235, 244, 545
NlaIII CATG 3 cut(s) 335, 460, 556
NlaIV GGNNCC 1 cut(s) 547
PagI TCATGA 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 348
Pfl23II CGTACG 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 451
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 3 cut(s) 31, 121, 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 545
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 4 cut(s) 144, 235, 244, 545
Sau96I GGNCC 3 cut(s) 31, 121, 130
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 3 cut(s) 201, 205, 295
SinI GGWCC 3 cut(s) 31, 121, 130
Sse9I AATT 3 cut(s) 181, 414, 601
SsiI CCGC 2 cut(s) 47, 105
SspI AATATT 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 3 cut(s) 53, 185, 342
TaqII GACCGA 1 cut(s) 138
TasI AATT 3 cut(s) 181, 414, 601
TscAI CASTG 2 cut(s) 266, 508
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 5 cut(s) 17, 348, 473, 528, 562
TspRI CASTG 2 cut(s) 266, 508
VpaK11BI GGWCC 3 cut(s) 31, 121, 130
XagI CCTNNNNNAGG 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.