RLG00000021017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003154
Physical Location & Seq
Forward (+)
71108652 .. 71110120
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021017

Sequence Viewer

Length: 1002 bp
ATGAGATCCCGGATTCACAGAGGGGAAGCAACGGTGCTTCAGTTGTTTCCCGGTTCGGTTTCTGCACTGGAGTCTGTTTTTGTTGAAGGATCCGACTGGCTCTTCTGGCCGCTGCATCTGTCAGGCGATGGCGTAACGCGTGGAGGCGCAAAGTGCGGTGGCGCGACGATGGTTTGCCGGCGAACGGAGATCAGCTCCAGAGGGGCTTGGACTTGGGCCTCGTTTTTGTTTTTCTTTTTGTTGGAACTGGCTTGGGCTGTGGCGTTCTGGCCCATTCACTCTTGGGCCCGTATTTGCGACCCAGGATATTCTGTAATACTCAAACGACACCACCACCTCAATAGTTTAACCCATTTCTCGGTGAAAGAAGAAGCACACCAACTCTCAACAACCACAACAGCAAACATGAAGAAGCTCTACAACAAGAAAGGCAAGGTCCACCCGTCGCCACCGCCTTCGACACCCGACCCGTTCGCCCTGCTTCCGGCCACCATTTTGACTCTGACCACCGCTCTCTCCGTCCAGGACCAAGAGGTCCTCGCCTATCTCATCTCTTACACCAACAACAACAACAACAATTCGACCAGCATCAACACCAACAAGGCCAACGATGCCCATAAAGCTGGAAACGATCACCCTGATCCTCCGATGTCCCAGTGCGACTGCTTTAGGTGCTACAAGAGCTTCTGGGCACGATGGGATGCTTCACCCAACCGGCAGCTCATACATGAAATCATCGAGGCGTACGAGGAAAAGTTGGCTGAGAAGAAGAGGAGAAATCCCAAGGTGAAGAAAGTGAGGAAGAAGAAAATTGAGGAGGAAACGAAGGGTAGTATTGATAATCTACCGGTCATGAAAGAGGAGCTGAGTAATAATCCAGAAGTGGATGTGGAAAACTGTGATGGTGATGAAGAGGGCTGTGAGGTTGAGGTTGAGAAAGGATCCTCCATGAGGAGGTTGGCGAGCTTCATTGGAGATAGGATTTGGGGTGTTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.61

Weight (kDa)

7.64

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 512
AccII CGCG 2 cut(s) 139, 164
AciI CCGC 4 cut(s) 110, 156, 452, 510
AclWI GGATC 5 cut(s) 84, 97, 635, 936, 949
AcoI YGGCCR 2 cut(s) 107, 486
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 5 cut(s) 184, 358, 484, 951, 954
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 847
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 2 cut(s) 301, 522
AluBI AGCT 7 cut(s) 195, 415, 623, 684, 721, 865, 966
AluI AGCT 7 cut(s) 195, 415, 623, 684, 721, 865, 966
AlwI GGATC 5 cut(s) 84, 97, 635, 936, 949
AoxI GGCC 6 cut(s) 107, 216, 269, 285, 486, 603
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 112, 718
AsiGI ACCGGT 1 cut(s) 847
AspLEI GCGC 2 cut(s) 149, 164
AspS9I GGNCC 7 cut(s) 216, 270, 285, 286, 436, 526, 535
AsuC2I CCSGG 2 cut(s) 10, 51
AsuHPI GGTGA 5 cut(s) 373, 626, 699, 799, 917
AvaII GGWCC 3 cut(s) 436, 526, 535
BaeGI GKGCMC 2 cut(s) 289, 694
BamHI GGATCC 2 cut(s) 89, 941
BanII GRGCYC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbvI GCAGC 2 cut(s) 99, 730
BccI CCATC 4 cut(s) 122, 163, 690, 896
BciT130I CCWGG 2 cut(s) 303, 524
BcnI CCSGG 2 cut(s) 10, 51
BisI GCNGC 3 cut(s) 110, 113, 719
BlsI GCNGC 3 cut(s) 111, 114, 720
Bme1390I CCNGG 4 cut(s) 10, 51, 303, 524
Bme18I GGWCC 3 cut(s) 436, 526, 535
BmgT120I GGNCC 7 cut(s) 216, 270, 285, 286, 436, 526, 535
BmiI GGNNCC 3 cut(s) 91, 287, 943
BmrFI CCNGG 4 cut(s) 10, 51, 303, 524
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 4 cut(s) 124, 597, 601, 691
BmuI ACTGGG 1 cut(s) 649
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 2 cut(s) 89, 181
BpuMI CCSGG 2 cut(s) 10, 51
BsaJI CCNNGG 2 cut(s) 301, 783
BsaWI WCCGGW 1 cut(s) 847
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 358, 484, 951, 954
Bse118I RCCGGY 3 cut(s) 177, 714, 847
Bse1I ACTGG 4 cut(s) 72, 101, 252, 655
BseBI CCWGG 2 cut(s) 303, 524
BseDI CCNNGG 2 cut(s) 301, 783
BseGI GGATG 2 cut(s) 706, 892
BseLI CCNNNNNNNGG 5 cut(s) 184, 358, 484, 951, 954
BseMII CTCAG 2 cut(s) 753, 857
BseNI ACTGG 4 cut(s) 72, 101, 252, 655
BseRI GAGGAG 4 cut(s) 787, 830, 875, 967
BseSI GKGCMC 2 cut(s) 289, 694
BseXI GCAGC 2 cut(s) 99, 730
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 2 cut(s) 139, 164
BshFI GGCC 6 cut(s) 109, 218, 271, 287, 488, 605
BshTI ACCGGT 1 cut(s) 847
BsiSI CCGG 6 cut(s) 10, 51, 178, 485, 715, 848
BsiWI CGTACG 1 cut(s) 744
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 5 cut(s) 184, 358, 484, 951, 954
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 6 cut(s) 109, 218, 271, 287, 488, 605
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 289, 694
Bsp143I GATC 6 cut(s) 5, 89, 189, 631, 640, 941
BspACI CCGC 4 cut(s) 110, 156, 452, 510
BspANI GGCC 6 cut(s) 109, 218, 271, 287, 488, 605
BspCNI CTCAG 2 cut(s) 754, 858
BspFNI CGCG 2 cut(s) 139, 164
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 3 cut(s) 91, 287, 943
BspPI GGATC 5 cut(s) 84, 97, 635, 936, 949
BspQI GCTCTTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 512
BsrFI RCCGGY 3 cut(s) 177, 714, 847
BsrI ACTGG 4 cut(s) 72, 101, 252, 655
BssAI RCCGGY 3 cut(s) 177, 714, 847
BssECI CCNNGG 2 cut(s) 301, 783
BssMI GATC 6 cut(s) 5, 89, 189, 631, 640, 941
BssT1I CCWWGG 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 303, 524
Bst4CI ACNGT 2 cut(s) 34, 899
Bst6I CTCTTC 3 cut(s) 107, 764, 906
BstC8I GCNNGC 2 cut(s) 179, 964
BstDEI CTNAG 2 cut(s) 762, 866
BstENI CCTNNNNNAGG 1 cut(s) 949
BstF5I GGATG 2 cut(s) 706, 892
BstFNI CGCG 2 cut(s) 139, 164
BstHHI GCGC 2 cut(s) 149, 164
BstKTI GATC 6 cut(s) 8, 92, 192, 634, 643, 944
BstMBI GATC 6 cut(s) 5, 89, 189, 631, 640, 941
BstMWI GCNNNNNNNGC 6 cut(s) 106, 153, 611, 620, 672, 681
BstNI CCWGG 2 cut(s) 303, 524
BstSCI CCNGG 4 cut(s) 8, 49, 301, 522
BstSLI GKGCMC 2 cut(s) 289, 694
BstUI CGCG 2 cut(s) 139, 164
BstV1I GCAGC 2 cut(s) 99, 730
BstX2I RGATCY 3 cut(s) 5, 89, 941
BstXI CCANNNNNNTGG 1 cut(s) 623
BstYI RGATCY 3 cut(s) 5, 89, 941
BsuRI GGCC 6 cut(s) 109, 218, 271, 287, 488, 605
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 706, 892
BtsIMutI CAGTG 2 cut(s) 65, 662
Cac8I GCNNGC 2 cut(s) 179, 964
CciI TCATGA 1 cut(s) 852
CfoI GCGC 2 cut(s) 149, 164
Cfr10I RCCGGY 3 cut(s) 177, 714, 847
Cfr13I GGNCC 7 cut(s) 216, 270, 285, 286, 436, 526, 535
Csp6I GTAC 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 847
CviAII CATG 4 cut(s) 406, 728, 853, 949
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 2 cut(s) 762, 866
DpnI GATC 6 cut(s) 7, 91, 191, 633, 642, 943
DpnII GATC 6 cut(s) 5, 89, 189, 631, 640, 941
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 2 cut(s) 107, 486
Eam1104I CTCTTC 3 cut(s) 107, 764, 906
EarI CTCTTC 3 cut(s) 107, 764, 906
Eco130I CCWWGG 1 cut(s) 783
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 436, 526, 535
Eco57I CTGAAG 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 949
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 301, 522
EcoT14I CCWWGG 1 cut(s) 783
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 4 cut(s) 409, 731, 856, 952
FaiI YATR 6 cut(s) 407, 618, 725, 729, 854, 950
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 405, 727, 852, 948
Fnu4HI GCNGC 3 cut(s) 110, 113, 719
FokI GGATG 2 cut(s) 713, 899
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 110, 113, 719
GlaI GCGC 2 cut(s) 148, 163
GluI GCNGC 3 cut(s) 110, 113, 719
GsuI CTGGAG 2 cut(s) 89, 181
HaeIII GGCC 6 cut(s) 109, 218, 271, 287, 488, 605
HapII CCGG 6 cut(s) 10, 51, 178, 485, 715, 848
HhaI GCGC 2 cut(s) 149, 164
Hin1II CATG 4 cut(s) 409, 731, 856, 952
Hin6I GCGC 2 cut(s) 147, 162
HinP1I GCGC 2 cut(s) 147, 162
HinfI GANTC 3 cut(s) 13, 71, 499
HpaII CCGG 6 cut(s) 10, 51, 178, 485, 715, 848
HphI GGTGA 5 cut(s) 373, 626, 699, 799, 917
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 94, 504, 648
Hpy188III TCNNGA 3 cut(s) 198, 853, 878
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 2 cut(s) 169, 448
HpyAV CCTTC 3 cut(s) 80, 465, 820
HpyCH4III ACNGT 2 cut(s) 34, 899
HpyCH4V TGCA 2 cut(s) 65, 115
HpyF10VI GCNNNNNNNGC 6 cut(s) 106, 153, 611, 620, 672, 681
HpyF3I CTNAG 2 cut(s) 762, 866
Hsp92II CATG 4 cut(s) 409, 731, 856, 952
HspAI GCGC 2 cut(s) 147, 162
KroI GCCGGC 1 cut(s) 177
KroNI GCCGGC 1 cut(s) 179
Kzo9I GATC 6 cut(s) 5, 89, 189, 631, 640, 941
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 200, 862
Lsp1109I GCAGC 2 cut(s) 99, 730
LweI GCATC 4 cut(s) 124, 597, 601, 691
MaeIII GTNAC 1 cut(s) 133
MalI GATC 6 cut(s) 7, 91, 191, 633, 642, 943
MbiI CCGCTC 1 cut(s) 512
MboI GATC 6 cut(s) 5, 89, 189, 631, 640, 941
MboII GAAGA 9 cut(s) 94, 380, 421, 778, 781, 802, 814, 817, 923
MflI RGATCY 3 cut(s) 5, 89, 941
MhlI GDGCHC 2 cut(s) 289, 694
MluCI AATT 3 cut(s) 577, 810, 997
MluI ACGCGT 1 cut(s) 137
MlyI GAGTC 2 cut(s) 80, 493
MmeI TCCRAC 2 cut(s) 117, 222
MroNI GCCGGC 1 cut(s) 177
MseI TTAA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 6 cut(s) 10, 51, 178, 485, 715, 848
MspR9I CCNGG 4 cut(s) 10, 51, 303, 524
MvaI CCWGG 2 cut(s) 303, 524
MvnI CGCG 2 cut(s) 139, 164
MwoI GCNNNNNNNGC 6 cut(s) 106, 153, 611, 620, 672, 681
NaeI GCCGGC 1 cut(s) 179
NciI CCSGG 2 cut(s) 10, 51
NdeII GATC 6 cut(s) 5, 89, 189, 631, 640, 941
NgoMIV GCCGGC 1 cut(s) 177
NlaIII CATG 4 cut(s) 409, 731, 856, 952
NlaIV GGNNCC 3 cut(s) 91, 287, 943
PagI TCATGA 1 cut(s) 852
PciSI GCTCTTC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PdiI GCCGGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 13
Pfl23II CGTACG 1 cut(s) 744
PfoI TCCNGGA 2 cut(s) 8, 522
PinAI ACCGGT 1 cut(s) 847
PkrI GCNGC 3 cut(s) 111, 114, 720
PleI GAGTC 2 cut(s) 79, 493
PpsI GAGTC 2 cut(s) 79, 493
PpuMI RGGWCCY 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 301, 522
PspGI CCWGG 2 cut(s) 301, 522
PspLI CGTACG 1 cut(s) 744
PspN4I GGNNCC 3 cut(s) 91, 287, 943
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 7 cut(s) 216, 270, 285, 286, 436, 526, 535
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 3 cut(s) 5, 89, 941
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 110, 113, 719
Sau3AI GATC 6 cut(s) 5, 89, 189, 631, 640, 941
Sau96I GGNCC 7 cut(s) 216, 270, 285, 286, 436, 526, 535
SchI GAGTC 2 cut(s) 80, 493
ScrFI CCNGG 4 cut(s) 10, 51, 303, 524
SduI GDGCHC 2 cut(s) 289, 694
SfaNI GCATC 4 cut(s) 124, 597, 601, 691
SinI GGWCC 3 cut(s) 436, 526, 535
Sse9I AATT 3 cut(s) 577, 810, 997
SsiI CCGC 4 cut(s) 110, 156, 452, 510
StyD4I CCNGG 4 cut(s) 8, 49, 301, 522
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 2 cut(s) 34, 899
TaqI TCGA 3 cut(s) 458, 581, 738
TasI AATT 3 cut(s) 577, 810, 997
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 72, 662
TseI GCWGC 2 cut(s) 112, 718
TspDTI ATGAA 5 cut(s) 422, 744, 869, 924, 958
TspGWI ACGGA 2 cut(s) 200, 508
TspRI CASTG 2 cut(s) 72, 662
VpaK11BI GGWCC 3 cut(s) 436, 526, 535
XagI CCTNNNNNAGG 1 cut(s) 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.