RLG00000030956

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003154
Physical Location & Seq
Forward (+)
887947 .. 888648
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030956

Sequence Viewer

Length: 702 bp
ATGAAGAAGCTGTACCGCAGAGGCACGGTTCATCCGTCACCGCCAACCGTGTCCGACCACCTGTCCTTCCTTCCCGCCACCATCCTCGCTCTTGCGGCCGCCCTGTCCCTCGGGGACAGGGAGGTCCTGGCTTACCTCATCTCCTGCTCCAACACTAACAACGCCAACCTAACATCCTCACCCTCCTCACGTAAGACTACTACCACAACCGCCACCAACAGCAGCAACAAAAAGAGTTCCGCCGCCAAAGGAGGCGGCGGAAGCGGCGGCGGGGACCACCAGACGCGGTTCAACTGCAGCTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCGAATCGAGAACTGATCCATGAGATCATCGATGCTTTTGAAGATGAGCTCCTTTCATCTCAGAGTGGCAGTAGTAGTAGTAGTAGTAGTAGTAAAGGGGCTGGGTCGAAGTATAGTAAGAAGGACAAGAGGCACCATAACAAGAGAGGAAACAGTGGTAGCGGGCCGGGTCAAGGTTCGGAGTTGAGTCTGAAGAAGAAGGATCAGATGGTGAAGCCTAACATGGTGGAGGAGACCAATAGTAGTAATAGTACTGACTCTGGTGATCTTGATGGTGATGAGGAAAGCAAGGGATCGGTGAGAAGATTTGTGAGCTTTCTTGGGGAGAGGATATGGGGTGGTGTCTGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.05

Weight (kDa)

9.14

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 477
AccII CGCG 1 cut(s) 286
AclWI GGATC 3 cut(s) 355, 555, 646
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 289, 557
AfaI GTAC 2 cut(s) 14, 598
AfiI CCNNNNNNNGG 1 cut(s) 518
AgsI TTSAA 2 cut(s) 292, 386
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 10, 300, 394, 660
AluI AGCT 4 cut(s) 10, 300, 394, 660
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 355, 555, 646
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 96, 509
ApeKI GCWGC 3 cut(s) 222, 297, 300
AspS9I GGNCC 3 cut(s) 124, 274, 509
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 6 cut(s) 30, 171, 568, 620, 632, 655
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 124, 274
BanI GGYRCC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 396
BarI GAAGNNNNNNTAC 1 cut(s) 28
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 234, 287, 309
BccI CCATC 4 cut(s) 89, 327, 547, 611
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 9 cut(s) 96, 99, 223, 243, 256, 265, 268, 298, 301
BlsI GCNGC 9 cut(s) 97, 100, 224, 244, 257, 266, 269, 299, 302
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 128, 513
Bme18I GGWCC 2 cut(s) 124, 274
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 124, 274, 509
BmiI GGNNCC 3 cut(s) 275, 479, 695
BmrFI CCNGG 2 cut(s) 128, 513
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 2 cut(s) 329, 697
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 31, 81, 173
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 329, 697
BseRI GAGGAG 2 cut(s) 175, 590
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 234, 287, 309
BseYI CCCAGC 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 98, 511
BshNI GGYRCC 1 cut(s) 477
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 4 cut(s) 91, 128, 287, 350
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 4 cut(s) 91, 128, 287, 350
BsnI GGCC 2 cut(s) 98, 511
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 5 cut(s) 360, 369, 547, 610, 638
BspANI GGCC 2 cut(s) 98, 511
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 275, 479, 695
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 3 cut(s) 355, 555, 646
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 572
BsrI ACTGG 2 cut(s) 329, 697
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 5 cut(s) 360, 369, 547, 610, 638
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 28, 49, 500
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 31, 81, 173
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 5 cut(s) 363, 372, 550, 613, 641
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 5 cut(s) 360, 369, 547, 610, 638
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 511
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 234, 287, 309
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 98, 511
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 3 cut(s) 31, 81, 173
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 509
CciNI GCGGCCGC 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 124, 274, 509
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 13, 597
CviAII CATG 2 cut(s) 365, 568
CviQI GTAC 2 cut(s) 13, 597
DdeI CTNAG 1 cut(s) 405
DpnI GATC 5 cut(s) 362, 371, 549, 612, 640
DpnII GATC 5 cut(s) 360, 369, 547, 610, 638
DrdI GACNNNNNNGTC 1 cut(s) 122
DriI GACNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 229, 273
Ecl136II GAGCTC 1 cut(s) 394
EclXI CGGCCG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 124, 274
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 289, 557
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 2 cut(s) 368, 571
FaiI YATR 5 cut(s) 366, 459, 483, 569, 679
FaqI GGGAC 4 cut(s) 91, 128, 287, 350
FatI CATG 2 cut(s) 364, 567
FauI CCCGC 3 cut(s) 82, 263, 500
Fnu4HI GCNGC 9 cut(s) 96, 99, 223, 243, 256, 265, 268, 298, 301
FokI GGATG 3 cut(s) 18, 68, 160
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 9 cut(s) 96, 99, 223, 243, 256, 265, 268, 298, 301
GluI GCNGC 9 cut(s) 96, 99, 223, 243, 256, 265, 268, 298, 301
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 2 cut(s) 98, 511
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 368, 571
HinfI GANTC 4 cut(s) 341, 349, 532, 602
HpaII CCGG 1 cut(s) 512
HphI GGTGA 6 cut(s) 30, 171, 568, 620, 632, 655
Hpy188I TCNGA 6 cut(s) 55, 332, 408, 526, 537, 552
Hpy188III TCNNGA 3 cut(s) 353, 614, 691
HpyAV CCTTC 4 cut(s) 76, 80, 460, 538
HpyCH4III ACNGT 3 cut(s) 28, 49, 500
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 368, 571
Kzo9I GATC 5 cut(s) 360, 369, 547, 610, 638
LmnI GCTCC 3 cut(s) 152, 399, 693
Lsp1109I GCAGC 3 cut(s) 234, 287, 309
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 36, 320
MalI GATC 5 cut(s) 362, 371, 549, 612, 640
MboI GATC 5 cut(s) 360, 369, 547, 610, 638
MboII GAAGA 5 cut(s) 16, 398, 550, 553, 660
MhlI GDGCHC 1 cut(s) 396
MlyI GAGTC 3 cut(s) 350, 541, 596
MmeI TCCRAC 2 cut(s) 78, 174
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 128, 513
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 4 cut(s) 95, 261, 264, 309
NciI CCSGG 1 cut(s) 513
NdeII GATC 5 cut(s) 360, 369, 547, 610, 638
NlaIII CATG 2 cut(s) 368, 571
NlaIV GGNNCC 3 cut(s) 275, 479, 695
NmuCI GTSAC 1 cut(s) 36
NotI GCGGCCGC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 9 cut(s) 97, 100, 224, 244, 257, 266, 269, 299, 302
PleI GAGTC 3 cut(s) 349, 540, 596
PpsI GAGTC 3 cut(s) 349, 540, 596
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 275, 479, 695
PspPI GGNCC 3 cut(s) 124, 274, 509
PspPPI RGGWCCY 1 cut(s) 124
PstI CTGCAG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 14, 598
RsaNI GTAC 2 cut(s) 13, 597
SacI GAGCTC 1 cut(s) 396
SatI GCNGC 9 cut(s) 96, 99, 223, 243, 256, 265, 268, 298, 301
Sau3AI GATC 5 cut(s) 360, 369, 547, 610, 638
Sau96I GGNCC 3 cut(s) 124, 274, 509
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 350, 541, 596
ScrFI CCNGG 2 cut(s) 128, 513
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 2 cut(s) 124, 274
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 126, 511
TaaI ACNGT 3 cut(s) 28, 49, 500
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 352, 375, 452
TatI WGTACW 1 cut(s) 596
TauI GCSGC 6 cut(s) 98, 101, 245, 258, 267, 270
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 222, 297, 300
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 17, 20, 390
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 124, 274
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.