Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003154

Physical Location & Seq

Genomic Coordinates Reverse (-)

40830521 .. 40831174

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1329600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAGAAGCTCTACCGAAAGGGAGCGGTTCATCCGTCACCGCCAATCATATCAGACCACCTGGCCTTTCTTCCCGCCACCATCCTCACCCTGGCGGCGGCTCTGTCACCCAAGGACAGAGAAGTCCTGGCTTACCTCATCTCCTGTTCTAACAGCTCCGTCAACTTATCCTCCTCCTCCTCCTCGTACGCTCCTCCACGTAATAGGACAACCGCCGCCGCCAAAAAGACGGCAGCAGCAAAGGGCGGCAGCGGGGGCGGTGTGGTTGCCGGGGATCACCCGGCTAGGTTTAACTGCAACTGCTTCAGGTGCTACACGAGTTACTGGGTCAGATGGGACGAGTCGCCAAATCGCCAACTCATCCACGAGATCATCGATGCTTTTGAAGATGAGCTGCTGACTGAGAGCAAAGGGTTTTCATCAAAGACTAGTAGGAAGGAGAGGAGGAACAAGAGTAGGGTTAATAATGGCTCGGGCGAGTTGAAGAGGTCCGAGTTGAGTGTGAAAAGGAAGGAGCTGGCTCAGTCTCACACGGCGGATCAAGAGGCCGGTGGCGGCGGCGGAGAGGTTGATGAGGAAGACTCGGAAAAAGGGTCAGTGAGAAGGTTTGTGAGCTTTCTTGGAGAGAGAATATGGGGTGTGTGGAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.72

Weight (kDa)

9.3

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12020 AT1G62422
fragaria_vesca	FvH4_3g01120 FvH4_6g41890
malus_domestica	MD05G1356500.v1.1 MD09G1116300.v1.1 MD10G1329600.v1.1 MD17G1108000.v1.1
prunus_persica	Prupe.3G208400_v2.0.a1 Prupe.4G012500_v2.0.a1
pyrus_communis	pycom05g32250 pycom09g04070 pycom10g27940
rosa_chinensis	RchiOBHm_Chr2g0157771 RchiOBHm_Chr5g0001691
rosa_laevigata	RLG00000021017 RLG00000030956
rosa_multiflora	Rmu_co7966984.1_g000001 Rmu_sc0001275.1_g000032 Rmu_sc0005595.1_g000002 Rmu_sc0019633.1_g000010 Rmu_ssc0000237.1_g000025
rosa_roxburghii	Rroxscaffold_1G00071150 Rroxscaffold_1G00074640 Rroxscaffold_2G00091970
rosa_rugosa	Rorug02G0463300 Rorug04G0391900
rosa_samantha	Rh2AG528700 Rh2BG542600 Rh2CG513000 Rh2DG551600 Rh5AG013300 Rh5BG016700 Rh5CG014300 Rh5DG014700
rosa_wichuraiana	Rw2G043710 Rw5G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	282, 546
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	91, 97
AgsI	TTSAA	2 cut(s)	386, 484
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	60, 90, 126
AluBI	AGCT	5 cut(s)	10, 156, 394, 517, 615
AluI	AGCT	5 cut(s)	10, 156, 394, 517, 615
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	2 cut(s)	282, 546
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	2 cut(s)	63, 546
ApeKI	GCWGC	4 cut(s)	233, 236, 249, 394
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	2 cut(s)	271, 281
AsuHPI	GGTGA	4 cut(s)	30, 79, 99, 269
AvaI	CYCGRG	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	489
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	316, 365
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	4 cut(s)	245, 248, 261, 381
BccI	CCATC	2 cut(s)	89, 327
BceAI	ACGGC	2 cut(s)	246, 549
BciT130I	CCWGG	3 cut(s)	62, 92, 128
BcnI	CCSGG	2 cut(s)	271, 281
BcoDI	GTCTC	1 cut(s)	531
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	285, 429
Bme1390I	CCNGG	5 cut(s)	62, 92, 128, 271, 281
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	489
BmrFI	CCNGG	5 cut(s)	62, 92, 128, 271, 281
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpuMI	CCSGG	2 cut(s)	271, 281
Bsa29I	ATCGAT	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	90, 111, 270
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 97
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	62, 92, 128
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	90, 111, 270
BseGI	GGATG	3 cut(s)	31, 81, 360
BseLI	CCNNNNNNNGG	2 cut(s)	91, 97
BseMII	CTCAG	2 cut(s)	393, 536
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	6 cut(s)	163, 166, 169, 172, 183, 457
BseXI	GCAGC	4 cut(s)	245, 248, 261, 381
BshFI	GGCC	2 cut(s)	65, 548
BshVI	ATCGAT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	270, 281, 549
BsiWI	CGTACG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	91, 97
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	65, 548
BsoBI	CYCGRG	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	274, 369, 538
BspANI	GGCC	2 cut(s)	65, 548
BspCNI	CTCAG	2 cut(s)	394, 535
BspDI	ATCGAT	1 cut(s)	375
BspPI	GGATC	2 cut(s)	282, 546
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	3 cut(s)	90, 111, 270
BssMI	GATC	3 cut(s)	274, 369, 538
BssSI	CACGAG	2 cut(s)	316, 365
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	2 cut(s)	316, 365
Bst2UI	CCWGG	3 cut(s)	62, 92, 128
Bst6I	CTCTTC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	402, 522
BstF5I	GGATG	3 cut(s)	31, 81, 360
BstKTI	GATC	3 cut(s)	277, 372, 541
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	3 cut(s)	274, 369, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 309
BstNI	CCWGG	3 cut(s)	62, 92, 128
BstSCI	CCNGG	5 cut(s)	60, 90, 126, 269, 279
BstV1I	GCAGC	4 cut(s)	245, 248, 261, 381
BstV2I	GAAGAC	1 cut(s)	585
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	65, 548
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	31, 81, 360
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	187
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	402, 522
DpnI	GATC	3 cut(s)	276, 371, 540
DpnII	GATC	3 cut(s)	274, 369, 538
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
EciI	GGCGGA	2 cut(s)	551, 576
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	60, 90, 126
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	2 cut(s)	50, 634
FaqI	GGGAC	1 cut(s)	350
FauI	CCCGC	2 cut(s)	82, 245
FokI	GGATG	3 cut(s)	18, 68, 347
FspBI	CTAG	2 cut(s)	285, 429
HaeIII	GGCC	2 cut(s)	65, 548
HapII	CCGG	3 cut(s)	270, 281, 549
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	341, 581, 646
HpaII	CCGG	3 cut(s)	270, 281, 549
HphI	GGTGA	4 cut(s)	30, 79, 99, 269
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	55, 332, 493, 586
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	430, 505, 597
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 309
HpyF3I	CTNAG	2 cut(s)	402, 522
HpySE526I	ACGT	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	274, 369, 538
LmnI	GCTCC	4 cut(s)	23, 161, 196, 514
Lsp1109I	GCAGC	4 cut(s)	245, 248, 261, 381
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	285, 429
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	36, 105, 320
MalI	GATC	3 cut(s)	276, 371, 540
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	3 cut(s)	274, 369, 538
MboII	GAAGA	5 cut(s)	16, 62, 398, 496, 590
MlyI	GAGTC	2 cut(s)	350, 575
MseI	TTAA	2 cut(s)	291, 462
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	3 cut(s)	270, 281, 549
MspR9I	CCNGG	5 cut(s)	62, 92, 128, 271, 281
MvaI	CCWGG	3 cut(s)	62, 92, 128
MwoI	GCNNNNNNNGC	2 cut(s)	255, 309
NciI	CCSGG	2 cut(s)	271, 281
NdeII	GATC	3 cut(s)	274, 369, 538
NmuCI	GTSAC	2 cut(s)	36, 105
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
Pfl23II	CGTACG	1 cut(s)	186
PleI	GAGTC	2 cut(s)	349, 575
PpsI	GAGTC	2 cut(s)	349, 575
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	3 cut(s)	60, 90, 126
PspGI	CCWGG	3 cut(s)	60, 90, 126
PspLI	CGTACG	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	489
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	291, 462
Sau3AI	GATC	3 cut(s)	274, 369, 538
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	2 cut(s)	350, 575
ScrFI	CCNGG	5 cut(s)	62, 92, 128, 271, 281
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	428
SspMI	CTAG	2 cut(s)	285, 429
StyD4I	CCNGG	5 cut(s)	60, 90, 126, 269, 279
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	375
TauI	GCSGC	7 cut(s)	98, 101, 218, 221, 249, 558, 561
Tru1I	TTAA	2 cut(s)	291, 462
Tru9I	TTAA	2 cut(s)	291, 462
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	2 cut(s)	36, 105
TseI	GCWGC	4 cut(s)	233, 236, 249, 394
Tsp45I	GTSAC	2 cut(s)	36, 105
TspDTI	ATGAA	3 cut(s)	17, 20, 408
TspGWI	ACGGA	2 cut(s)	24, 148
TspRI	CASTG	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	285, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.