Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

4389678 .. 4391344

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCGGTTCTTTCTTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCCGTCTCGTTTCTGGATGCATTCCTTATAGGCTGATGAAAGCTGACGAAACTGAAGAAGACTCAGGTGTTGACTTTGTAAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTCATGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCCATTGAAGAAGCAGGAGTTAAAGGAATACTTAGAGAACTTCCTTTAGGAGTTTGGGAATTTAGAAGCAAAAGTAGCACAGTGGAGGATGAATGTTTAGGTGGATGTAAAGGATATATGTTTGCATTAAAAGTTACCGAAGAACTCGAGGATTGGCCAGAGCGAAAGAATCGTGAACGAAGATGGTTGACTGTTAAAGAAGCGTTGGAGCTTTGTCGGTATGAGTGGATGCAGAGAGCACTTGAAGAGTTTTTGAGAGTAATGGAAGATGAAAGAAGATTGAGAACAGAGGAAGAGACAGTGCATGATTCTTCAAAGCTAGAGGAGGAGAGTCAAATAGATCCTTGGTACTGTTTTGTAGTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

203

Amino Acids

23.87

Weight (kDa)

4.74

Isoelectric Point (pI)

65.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	48 - 163	9.9e-12	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	33
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	146, 227, 251, 488, 558
AluBI	AGCT	4 cut(s)	98, 230, 454, 562
AluI	AGCT	4 cut(s)	98, 230, 454, 562
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	3 cut(s)	65, 209, 533
AlwI	GGATC	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	400
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	120, 178
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	195, 420
BcoDI	GTCTC	3 cut(s)	65, 209, 533
BfaI	CTAG	2 cut(s)	563, 610
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	62, 462
BpiI	GAAGAC	2 cut(s)	120, 178
BsaJI	CCNNGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	5 cut(s)	77, 206, 337, 353, 477
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	581, 584
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	3 cut(s)	65, 209, 533
BsmBI	CGTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	31, 178, 583
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	3 cut(s)	31, 178, 583
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	237
Bst4CI	ACNGT	5 cut(s)	220, 325, 436, 544, 596
Bst6I	CTCTTC	2 cut(s)	483, 531
BstDEI	CTNAG	2 cut(s)	118, 275
BstF5I	GGATG	5 cut(s)	77, 206, 337, 353, 477
BstKTI	GATC	3 cut(s)	34, 181, 586
BstMAI	GTCTC	3 cut(s)	65, 209, 533
BstMBI	GATC	3 cut(s)	31, 178, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	2 cut(s)	120, 178
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	5 cut(s)	77, 206, 337, 353, 477
BtsIMutI	CAGTG	2 cut(s)	330, 549
CciI	TCATGA	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	2 cut(s)	176, 548
CviJI	RGCY	7 cut(s)	88, 98, 230, 245, 400, 454, 562
CviKI_1	RGCY	7 cut(s)	88, 98, 230, 245, 400, 454, 562
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	2 cut(s)	118, 275
DpnI	GATC	3 cut(s)	33, 180, 585
DpnII	GATC	3 cut(s)	31, 178, 583
DrdI	GACNNNNNNGTC	1 cut(s)	33
DseDI	GACNNNNNNGTC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	2 cut(s)	483, 531
EarI	CTCTTC	2 cut(s)	483, 531
Eco130I	CCWWGG	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	587
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	179, 551
FaiI	YATR	7 cut(s)	84, 155, 177, 360, 362, 465, 549
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	2 cut(s)	175, 547
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	5 cut(s)	84, 213, 344, 360, 484
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	563, 610
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	179, 551
HincII	GTYRAC	4 cut(s)	38, 127, 432, 607
HindII	GTYRAC	4 cut(s)	38, 127, 432, 607
HinfI	GANTC	4 cut(s)	116, 412, 551, 574
HpaI	GTTAAC	1 cut(s)	607
Hpy166II	GTNNAC	6 cut(s)	38, 127, 136, 419, 432, 607
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	69, 176, 224, 239, 416
Hpy8I	GTNNAC	6 cut(s)	38, 127, 136, 419, 432, 607
HpyCH4III	ACNGT	5 cut(s)	220, 325, 436, 544, 596
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	75, 368, 475, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	118, 275
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	179, 551
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	31, 178, 583
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	5 cut(s)	9, 54, 105, 243, 414
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	62, 462
MaeI	CTAG	2 cut(s)	563, 610
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	41, 376
MalI	GATC	3 cut(s)	33, 180, 585
MboI	GATC	3 cut(s)	31, 178, 583
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	400
MlyI	GAGTC	2 cut(s)	110, 583
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	6 cut(s)	191, 322, 385, 526, 559, 562
Mox20I	TGGCCA	1 cut(s)	400
Mph1103I	ATGCAT	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	400
MseI	TTAA	4 cut(s)	264, 371, 438, 606
Msp20I	TGGCCA	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	3 cut(s)	31, 178, 583
NlaIII	CATG	2 cut(s)	179, 551
NsiI	ATGCAT	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	412, 551
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	110, 582
PpsI	GAGTC	2 cut(s)	110, 582
Psp1406I	AACGTT	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	264, 371, 438, 606
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	31, 178, 583
SchI	GAGTC	2 cut(s)	110, 583
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	7 cut(s)	43, 100, 124, 232, 346, 456, 564
SfaNI	GCATC	2 cut(s)	62, 462
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	302
SspMI	CTAG	2 cut(s)	563, 610
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	5 cut(s)	220, 325, 436, 544, 596
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	412, 551
Tru1I	TTAA	4 cut(s)	264, 371, 438, 606
Tru9I	TTAA	4 cut(s)	264, 371, 438, 606
TscAI	CASTG	2 cut(s)	330, 549
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	107, 150, 348, 528
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	330, 549
XapI	RAATTY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	2 cut(s)	563, 610
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.