Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

119667 .. 121276

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCATCTTCTGTGCTACTAGCGCGAACTGGGCGACATCGGCAACGCTATGACAACAATTTCCGACTCGTTTCTGGATGCATTCCTTACCGGATAGCAGAAGACGATGGAGACGACCAATTTGTTGATATTGAGAACAGGATACAAGTTCTTATGGTTTCTTCACCAGACCGTCATGACAGAGTCTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGTGAAGCCTTTGAGGAAGCAGGGGTCAAAGGAACCCTAAGAGAAACTCCGCTGGGAGTATGGGAGTTCAGAAGCAAAAGTAGAGAGGAAATGTGCAGCCTCAGCCTGGAAGGAGGATGCAGAGGATACATGTTTGCGTTGGAGGTCACTCAAGAGCTCGATACCTGGCCAGAGCAGCAAAACCGTGACAGAAAATGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

147

Amino Acids

16.89

Weight (kDa)

4.86

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	25
AciI	CCGC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	197, 343
AflIII	ACRYGT	1 cut(s)	366
AjnI	CCWGG	2 cut(s)	342, 401
AluBI	AGCT	3 cut(s)	230, 394, 438
AluI	AGCT	3 cut(s)	230, 394, 438
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	105, 209
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	230, 333, 412
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	108, 178
Bbv12I	GWGCWC	1 cut(s)	396
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	217, 345, 424
BccI	CCATC	2 cut(s)	101, 195
BciT130I	CCWGG	2 cut(s)	344, 403
BciVI	GTATCC	2 cut(s)	135, 356
BcoDI	GTCTC	2 cut(s)	105, 209
BfaI	CTAG	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	135, 356
BisI	GCNGC	3 cut(s)	231, 334, 413
BlsI	GCNGC	3 cut(s)	232, 335, 414
Bme1390I	CCNGG	2 cut(s)	344, 403
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	344, 403
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	68, 344
BmuI	ACTGGG	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	108, 178
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 343
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	344, 403
BseGI	GGATG	4 cut(s)	83, 206, 214, 359
BseLI	CCNNNNNNNGG	2 cut(s)	197, 343
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	217, 345, 424
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	197, 343
BsmAI	GTCTC	2 cut(s)	105, 209
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	344, 403
Bst4CI	ACNGT	3 cut(s)	173, 220, 422
BstDEI	CTNAG	2 cut(s)	275, 338
BstF5I	GGATG	4 cut(s)	83, 206, 214, 359
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	105, 209
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 31, 40, 339, 412
BstNI	CCWGG	2 cut(s)	344, 403
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	342, 401
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	217, 345, 424
BstV2I	GAAGAC	2 cut(s)	108, 178
BsuI	GTATCC	2 cut(s)	135, 356
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	4 cut(s)	83, 206, 214, 359
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	2 cut(s)	176, 367
CviJI	RGCY	7 cut(s)	230, 245, 336, 342, 394, 406, 438
CviKI_1	RGCY	7 cut(s)	230, 245, 336, 342, 394, 406, 438
DdeI	CTNAG	2 cut(s)	275, 338
EaeI	YGGCCR	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	342, 401
EcoT22I	ATGCAT	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	179, 370
FaiI	YATR	5 cut(s)	51, 155, 177, 298, 368
FatI	CATG	2 cut(s)	175, 366
Fnu4HI	GCNGC	3 cut(s)	231, 334, 413
FokI	GGATG	4 cut(s)	90, 213, 221, 366
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	231, 334, 413
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	231, 334, 413
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	179, 370
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	66, 183
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	65, 308
Hpy188III	TCNNGA	4 cut(s)	75, 176, 239, 389
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	173, 220, 422
HpyCH4V	TGCA	3 cut(s)	81, 333, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 31, 40, 339, 412
HpyF3I	CTNAG	2 cut(s)	275, 338
Hsp92II	CATG	2 cut(s)	179, 370
HspAI	GCGC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	3 cut(s)	217, 345, 424
LweI	GCATC	2 cut(s)	68, 344
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	382, 422
MboII	GAAGA	3 cut(s)	113, 153, 178
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	2 cut(s)	58, 119
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	60, 192
MmeI	TCCRAC	2 cut(s)	88, 357
MnlI	CCTC	7 cut(s)	199, 244, 316, 344, 347, 353, 373
Mox20I	TGGCCA	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	406
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	344, 403
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	344, 403
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	5 cut(s)	22, 31, 40, 339, 412
NlaIII	CATG	2 cut(s)	179, 370
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	382, 422
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	1 cut(s)	370
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	232, 335, 414
PleI	GAGTC	2 cut(s)	60, 191
PpsI	GAGTC	2 cut(s)	60, 191
PscI	ACATGT	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	342, 401
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	342, 401
PspN4I	GGNNCC	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	396
SatI	GCNGC	3 cut(s)	231, 334, 413
SchI	GAGTC	2 cut(s)	60, 192
ScrFI	CCNGG	2 cut(s)	344, 403
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	6 cut(s)	199, 232, 384, 396, 404, 440
SfaNI	GCATC	2 cut(s)	68, 344
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	58, 119
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	342, 401
TaaI	ACNGT	3 cut(s)	173, 220, 422
TaqI	TCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	58, 119
TseFI	GTSAC	2 cut(s)	382, 422
TseI	GCWGC	3 cut(s)	230, 333, 412
Tsp45I	GTSAC	2 cut(s)	382, 422
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	197
XceI	RCATGY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.