Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

71752590 .. 71754102

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0597000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATAATCAAAACAGTCGATGAATGCTCGTATTTTCCGACTATGACGATCAAAGGAGGCACAAGCCAGGCCTGTGCTGCGTGTAAATACCAGAGACGACGGTGCACCAAGGACTGCGATCTCGCCCCTCATTTTCCAGCCGACCAGCCCAAAATGTTCCAGAACGCTCACCGCCTCTACGGCGTTTCAAATATTATGAAGATCCTCAAGCAGACTCACCCGGAGCAGAAAGAAGAGGCGATGCGATCCATTATCTACGAATCCAACATGAGAGCCAAGTTTCCCGTCACCGGGTGCATGGGAATCATCAACCAATTGACATTCCAACTCCAGCAAGCCTTCGATGAGATCCGGTACGTCCGGTCCCATCTCGCCATCTGCCGGGACCAGTGCCAGTACCAGTACAATTCACCTTCGTGTCCATCTTCGCAGTTGCAATTAGGGATTCAAACAAACGACCACGAGGCGCTGCAGCTCTACCAGCAGCAGTACCAATATCATCAGTATAATTCTGCCGCCGGTAGCAGCGCCGGTGGTGGTGGGATGTCATTGATGGCGAACGAGTATCTGGCGAATGGGATTAATGGGGTTTACATCGATGACAATGATAGTGTGGTAAAACCTCTTAGGGTTCAGCAGTTTTATTATGGGAACAATAATGTTGATGCTGTGGCTGTTCAACATAATTTGATGACATCCCAAGGGTTTCCTATTCAACAAGAAATGGATGTTCCTCATGATTATGATGACATTCCATTTGATACAATTGCTGATGATCGTCAATCGTATATAGATTCTAAGGAAGCCTGTGAATCGAGTGCCGAGTCAGCCTTCAAGGGTACTACCACGCAGTCGTTAGAACATGTCTCCCAGAACGACCTCAAGAGTGCAGCAGCATGCTTCAGTCTAACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

305

Amino Acids

34.27

Weight (kDa)

5.43

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	24 - 120	2.6e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	172, 516
AclWI	GGATC	3 cut(s)	196, 240, 343
AcuI	CTGAAG	1 cut(s)	886
AdeI	CACNNNGTG	1 cut(s)	294
AfaI	GTAC	5 cut(s)	356, 398, 404, 491, 841
AfiI	CCNNNNNNNGG	3 cut(s)	290, 291, 381
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	189, 449, 680, 716, 835
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	2 cut(s)	475, 915
AluI	AGCT	2 cut(s)	475, 915
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	88, 871
Alw44I	GTGCAC	1 cut(s)	103
AlwI	GGATC	3 cut(s)	196, 240, 343
AoxI	GGCC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	7 cut(s)	77, 469, 472, 484, 525, 890, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AseI	ATTAAT	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	469, 530
AspS9I	GGNCC	2 cut(s)	363, 385
AsuC2I	CCSGG	3 cut(s)	221, 292, 383
AsuHPI	GGTGA	4 cut(s)	161, 209, 280, 402
AvaII	GGWCC	2 cut(s)	363, 385
BaeGI	GKGCMC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	7 cut(s)	64, 456, 484, 496, 537, 902, 905
BccI	CCATC	4 cut(s)	375, 383, 430, 547
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	3 cut(s)	221, 292, 383
BcoDI	GTCTC	2 cut(s)	88, 871
BfaI	CTAG	1 cut(s)	916
BfmI	CTRYAG	1 cut(s)	470
BfoI	RGCGCY	2 cut(s)	470, 531
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	8 cut(s)	78, 470, 473, 485, 516, 526, 891, 894
BlsI	GCNGC	8 cut(s)	79, 471, 474, 486, 517, 527, 892, 895
Bme1390I	CCNGG	4 cut(s)	68, 221, 292, 383
Bme18I	GGWCC	2 cut(s)	363, 385
BmgT120I	GGNCC	2 cut(s)	363, 385
BmiI	GGNNCC	2 cut(s)	365, 386
BmrFI	CCNGG	4 cut(s)	68, 221, 292, 383
BmsI	GCATC	2 cut(s)	231, 655
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	191, 866
BpuMI	CCSGG	3 cut(s)	221, 292, 383
Bsa29I	ATCGAT	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	108, 700
BsaWI	WCCGGW	2 cut(s)	351, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 291, 381
Bse118I	RCCGGY	2 cut(s)	518, 530
Bse1I	ACTGG	3 cut(s)	388, 394, 400
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	108, 700
BseGI	GGATG	3 cut(s)	549, 695, 733
BseLI	CCNNNNNNNGG	3 cut(s)	290, 291, 381
BseNI	ACTGG	3 cut(s)	388, 394, 400
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	7 cut(s)	64, 456, 484, 496, 537, 902, 905
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	7 cut(s)	221, 291, 352, 361, 382, 519, 531
BslFI	GGGAC	2 cut(s)	349, 398
BslI	CCNNNNNNNGG	3 cut(s)	290, 291, 381
BsmAI	GTCTC	2 cut(s)	88, 871
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	349, 398
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
BspACI	CCGC	2 cut(s)	172, 516
BspANI	GGCC	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	365, 386
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	3 cut(s)	196, 240, 343
BsrFI	RCCGGY	2 cut(s)	518, 530
BsrI	ACTGG	3 cut(s)	388, 394, 400
BssAI	RCCGGY	2 cut(s)	518, 530
BssECI	CCNNGG	2 cut(s)	108, 700
BssMI	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
BssSI	CACGAG	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	108, 700
Bst2BI	CACGAG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	16, 102
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	336, 898
BstDEI	CTNAG	2 cut(s)	626, 798
BstF5I	GGATG	3 cut(s)	549, 695, 733
BstH2I	RGCGCY	2 cut(s)	470, 531
BstHHI	GCGC	2 cut(s)	469, 530
BstKTI	GATC	6 cut(s)	51, 121, 204, 248, 351, 778
BstMAI	GTCTC	2 cut(s)	88, 871
BstMBI	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 180, 481, 827
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	866, 900
BstSCI	CCNGG	4 cut(s)	66, 219, 290, 381
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	7 cut(s)	64, 456, 484, 496, 537, 902, 905
BstX2I	RGATCY	2 cut(s)	201, 348
BstYI	RGATCY	2 cut(s)	201, 348
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	597
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	549, 695, 733
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	336, 898
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	2 cut(s)	469, 530
Cfr10I	RCCGGY	2 cut(s)	518, 530
Cfr13I	GGNCC	2 cut(s)	363, 385
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	5 cut(s)	355, 397, 403, 490, 840
CviAII	CATG	5 cut(s)	268, 298, 737, 863, 897
CviQI	GTAC	5 cut(s)	355, 397, 403, 490, 840
DdeI	CTNAG	2 cut(s)	626, 798
DpnI	GATC	6 cut(s)	50, 120, 203, 247, 350, 777
DpnII	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
DraIII	CACNNNGTG	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	108, 700
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	363, 385
Eco57I	CTGAAG	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	108, 700
ErhI	CCWWGG	2 cut(s)	108, 700
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	5 cut(s)	271, 301, 740, 866, 900
FaqI	GGGAC	2 cut(s)	349, 398
FatI	CATG	5 cut(s)	267, 297, 736, 862, 896
Fnu4HI	GCNGC	8 cut(s)	78, 470, 473, 485, 516, 526, 891, 894
FokI	GGATG	3 cut(s)	556, 682, 740
Fsp4HI	GCNGC	8 cut(s)	78, 470, 473, 485, 516, 526, 891, 894
FspBI	CTAG	1 cut(s)	916
GlaI	GCGC	2 cut(s)	468, 529
GluI	GCNGC	8 cut(s)	78, 470, 473, 485, 516, 526, 891, 894
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	2 cut(s)	470, 531
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	7 cut(s)	221, 291, 352, 361, 382, 519, 531
HhaI	GCGC	2 cut(s)	469, 530
Hin1II	CATG	5 cut(s)	271, 301, 740, 866, 900
Hin6I	GCGC	2 cut(s)	467, 528
HinP1I	GCGC	2 cut(s)	467, 528
HinfI	GANTC	7 cut(s)	214, 260, 303, 445, 794, 812, 824
HpaII	CCGG	7 cut(s)	221, 291, 352, 361, 382, 519, 531
HphI	GGTGA	4 cut(s)	161, 209, 280, 402
Hpy166II	GTNNAC	2 cut(s)	105, 592
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	3 cut(s)	160, 737, 883
Hpy8I	GTNNAC	2 cut(s)	105, 592
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	3 cut(s)	349, 423, 841
HpyCH4III	ACNGT	2 cut(s)	16, 102
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	105, 297, 436, 472, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 180, 481, 827
HpyF3I	CTNAG	2 cut(s)	626, 798
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	271, 301, 740, 866, 900
HspAI	GCGC	2 cut(s)	467, 528
Kzo9I	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	7 cut(s)	64, 456, 484, 496, 537, 902, 905
LweI	GCATC	2 cut(s)	231, 655
MaeI	CTAG	1 cut(s)	916
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	6 cut(s)	50, 120, 203, 247, 350, 777
MboI	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
MboII	GAAGA	3 cut(s)	211, 245, 417
MfeI	CAATTG	2 cut(s)	314, 765
MflI	RGATCY	2 cut(s)	201, 348
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	6 cut(s)	314, 406, 437, 508, 685, 765
MlyI	GAGTC	2 cut(s)	208, 833
MmeI	TCCRAC	3 cut(s)	62, 288, 349
MnlI	CCTC	9 cut(s)	50, 138, 185, 215, 229, 457, 633, 744, 890
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	415, 741
MspI	CCGG	7 cut(s)	221, 291, 352, 361, 382, 519, 531
MspR9I	CCNGG	4 cut(s)	68, 221, 292, 383
MunI	CAATTG	2 cut(s)	314, 765
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	77, 180, 481, 827
NciI	CCSGG	3 cut(s)	221, 292, 383
NdeII	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
NlaIII	CATG	5 cut(s)	271, 301, 740, 866, 900
NlaIV	GGNNCC	2 cut(s)	365, 386
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	2 cut(s)	866, 900
OliI	CACNNNNGTG	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	900
PagI	TCATGA	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	71
PciI	ACATGT	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	5 cut(s)	260, 303, 445, 794, 812
PkrI	GCNGC	8 cut(s)	79, 471, 474, 486, 517, 527, 892, 895
PleI	GAGTC	2 cut(s)	208, 832
PpsI	GAGTC	2 cut(s)	208, 832
PscI	ACATGT	1 cut(s)	862
PshBI	ATTAAT	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	365, 386
PspPI	GGNCC	2 cut(s)	363, 385
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	201, 348
RsaI	GTAC	5 cut(s)	356, 398, 404, 491, 841
RsaNI	GTAC	5 cut(s)	355, 397, 403, 490, 840
RseI	CAYNNNNRTG	2 cut(s)	415, 741
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	8 cut(s)	78, 470, 473, 485, 516, 526, 891, 894
Sau3AI	GATC	6 cut(s)	48, 118, 201, 245, 348, 775
Sau96I	GGNCC	2 cut(s)	363, 385
SchI	GAGTC	2 cut(s)	208, 833
ScrFI	CCNGG	4 cut(s)	68, 221, 292, 383
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	360, 415, 477, 625, 882, 917
SfaNI	GCATC	2 cut(s)	231, 655
SfcI	CTRYAG	1 cut(s)	470
SgrAI	CRCCGGYG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	363, 385
SmiMI	CAYNNNNRTG	2 cut(s)	415, 741
SmlI	CTYRAG	2 cut(s)	206, 881
SmoI	CTYRAG	2 cut(s)	206, 881
SphI	GCATGC	1 cut(s)	900
Sse9I	AATT	6 cut(s)	314, 406, 437, 508, 685, 765
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	172, 516
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	916
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	66, 219, 290, 381
StyI	CCWWGG	2 cut(s)	108, 700
TaaI	ACNGT	2 cut(s)	16, 102
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	4 cut(s)	18, 342, 597, 815
TasI	AATT	6 cut(s)	314, 406, 437, 508, 685, 765
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	5 cut(s)	260, 303, 445, 794, 812
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	7 cut(s)	77, 469, 472, 484, 525, 890, 893
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	36, 212
TspRI	CASTG	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	363, 385
VspI	ATTAAT	1 cut(s)	582
XceI	RCATGY	2 cut(s)	866, 900
XspI	CTAG	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.