Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

383343 .. 393006

Gene Structure 9664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1005200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCATCTTCCGTACTGGCACGAACTGGGCGACAGCGACAACGATATGACAACAATTTCCGCCTCGTTTCCGGATGCATTCCTTACCGGATAACAGAAAACTATGAAGATGATGATGAGAGTGGTGATATTGAGAACAAGATACAAGTTCTTATGGTTTCTTCACCAGACCGCCATGACAGAGTCTTCCCAAAAGGTGGATGGGAGGATGATGAAACTGTTTTAGAAGCTGCTTGTCGGGAAGCCTTTGAGGAAGCAGGGGTCAAAGGAAATCTAAGAGAAACTCCGCTGGGAGTATGGGAGTTCAGAAGCAAAAGCAGAGAGGAGATGTGCAGCCTCAGCCTGGAAGGAGGATGCAGAGGATATATGTTTGCATTAGAGGTCACTCAAGAGCTTGATACCTGGCCAGAGCACCAAAACCGTGACAGGAAATGGCTAAGCATAAAGGAGGCATTTAGGGTGTGCCGGTATGAATGGATGCGCAAAGCGTTGGAGCAGTTTCTGAGAGTCATGGGAGGAGGACTAGTACTGTCAGTTTGTGATGATAATGATAATATTGATGATGAGGATGGAAAAGTGAAAGTTGTGGAGATGATGATGGGATCAGAAGATGAGATGAAATTAGGAGGGGAGCTGCCACCTTCGGATTCTACCCTGCAGCCGCCGCTGCTGCCGTTGTCAGATGCGGAACATGTGATGGCTGAATGTAAAATAGTGTCGTCAAACTGCTACATAAAGCCAGCTTCTTCTTCTTCAAGTGCTAGTGCTAGTCAACTGGTGATATCAGTTCATTGTCATGGCACTTGGCTCTCAAGGACAAGCGGGGGTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

279

Amino Acids

31.3

Weight (kDa)

4.87

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	49 - 166	3.4e-12	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	7 cut(s)	61, 172, 287, 662, 665, 686, 822
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	404
AfaI	GTAC	2 cut(s)	15, 528
AfiI	CCNNNNNNNGG	2 cut(s)	197, 343
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	1 cut(s)	756
AhlI	ACTAGT	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	342, 401
AluBI	AGCT	4 cut(s)	230, 394, 634, 743
AluI	AGCT	4 cut(s)	230, 394, 634, 743
Alw21I	GWGCWC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	6 cut(s)	230, 333, 634, 658, 667, 670
AspLEI	GCGC	1 cut(s)	483
AsuHPI	GGTGA	3 cut(s)	137, 156, 790
BalI	TGGCCA	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	6 cut(s)	217, 345, 621, 654, 657, 670
BccI	CCATC	4 cut(s)	195, 563, 592, 691
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	2 cut(s)	344, 403
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	3 cut(s)	524, 762, 768
BfmI	CTRYAG	1 cut(s)	656
BisI	GCNGC	8 cut(s)	231, 334, 635, 659, 662, 665, 668, 671
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	8 cut(s)	232, 335, 636, 660, 663, 666, 669, 672
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	344, 403
BmrFI	CCNGG	2 cut(s)	344, 403
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	4 cut(s)	65, 344, 468, 673
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	372, 796
BsaWI	WCCGGW	2 cut(s)	71, 87
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 343
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	3 cut(s)	21, 31, 780
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	344, 403
BseGI	GGATG	6 cut(s)	80, 206, 214, 359, 483, 574
BseLI	CCNNNNNNNGG	2 cut(s)	197, 343
BseMII	CTCAG	2 cut(s)	352, 494
BseNI	ACTGG	3 cut(s)	21, 31, 780
BseRI	GAGGAG	2 cut(s)	338, 531
BseXI	GCAGC	6 cut(s)	217, 345, 621, 654, 657, 670
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	72, 88, 466
BslI	CCNNNNNNNGG	2 cut(s)	197, 343
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	602
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	7 cut(s)	61, 172, 287, 662, 665, 686, 822
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	351, 495
BspEI	TCCGGA	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	21, 31, 780
BssAI	RCCGGY	1 cut(s)	465
BssMI	GATC	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	344, 403
Bst4CI	ACNGT	3 cut(s)	220, 422, 531
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	4 cut(s)	275, 338, 437, 503
BstF5I	GGATG	6 cut(s)	80, 206, 214, 359, 483, 574
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	605
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 664, 667, 670, 828
BstNI	CCWGG	2 cut(s)	344, 403
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	342, 401
BstSFI	CTRYAG	1 cut(s)	656
BstV1I	GCAGC	6 cut(s)	217, 345, 621, 654, 657, 670
BstV2I	GAAGAC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	6 cut(s)	80, 206, 214, 359, 483, 574
Cac8I	GCNNGC	1 cut(s)	741
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	14, 527
CviAII	CATG	4 cut(s)	176, 511, 692, 797
CviQI	GTAC	2 cut(s)	14, 527
DdeI	CTNAG	4 cut(s)	275, 338, 437, 503
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	783
EcoRII	CCWGG	2 cut(s)	342, 401
EcoRV	GATATC	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	80
FaeI	CATG	4 cut(s)	179, 514, 695, 800
FatI	CATG	4 cut(s)	175, 510, 691, 796
FauI	CCCGC	1 cut(s)	815
Fnu4HI	GCNGC	8 cut(s)	231, 334, 635, 659, 662, 665, 668, 671
FokI	GGATG	6 cut(s)	87, 213, 221, 366, 490, 581
Fsp4HI	GCNGC	8 cut(s)	231, 334, 635, 659, 662, 665, 668, 671
FspBI	CTAG	3 cut(s)	524, 762, 768
FspI	TGCGCA	1 cut(s)	482
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	8 cut(s)	231, 334, 635, 659, 662, 665, 668, 671
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	3 cut(s)	72, 88, 466
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	179, 514, 695, 800
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	773
HindII	GTYRAC	1 cut(s)	773
HinfI	GANTC	3 cut(s)	183, 507, 647
HpaII	CCGG	3 cut(s)	72, 88, 466
HphI	GGTGA	3 cut(s)	137, 156, 790
Hpy166II	GTNNAC	1 cut(s)	773
Hpy188I	TCNGA	5 cut(s)	308, 504, 607, 646, 682
Hpy188III	TCNNGA	3 cut(s)	72, 239, 389
Hpy8I	GTNNAC	1 cut(s)	773
HpyAV	CCTTC	2 cut(s)	341, 651
HpyCH4III	ACNGT	3 cut(s)	220, 422, 531
HpyCH4V	TGCA	5 cut(s)	78, 333, 357, 374, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 664, 667, 670, 828
HpyF3I	CTNAG	4 cut(s)	275, 338, 437, 503
Hsp92II	CATG	4 cut(s)	179, 514, 695, 800
HspAI	GCGC	1 cut(s)	481
Kpn2I	TCCGGA	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	602
LmnI	GCTCC	2 cut(s)	493, 631
Lsp1109I	GCAGC	6 cut(s)	217, 345, 621, 654, 657, 670
LweI	GCATC	4 cut(s)	65, 344, 468, 673
MaeI	CTAG	3 cut(s)	524, 762, 768
MaeIII	GTNAC	2 cut(s)	382, 422
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MboII	GAAGA	7 cut(s)	119, 153, 178, 620, 738, 741, 744
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	2 cut(s)	55, 620
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	192, 516
MmeI	TCCRAC	1 cut(s)	471
Mox20I	TGGCCA	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	406
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	2 cut(s)	289, 667
MspI	CCGG	3 cut(s)	72, 88, 466
MspR9I	CCNGG	2 cut(s)	344, 403
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	344, 403
MwoI	GCNNNNNNNGC	5 cut(s)	339, 664, 667, 670, 828
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	4 cut(s)	179, 514, 695, 800
NmuCI	GTSAC	2 cut(s)	382, 422
NsbI	TGCGCA	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	80
NspI	RCATGY	1 cut(s)	695
PciI	ACATGT	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	8 cut(s)	232, 335, 636, 660, 663, 666, 669, 672
PleI	GAGTC	2 cut(s)	191, 515
PpsI	GAGTC	2 cut(s)	191, 515
PscI	ACATGT	1 cut(s)	691
Psp6I	CCWGG	2 cut(s)	342, 401
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	342, 401
PstI	CTGCAG	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	15, 528
RsaNI	GTAC	2 cut(s)	14, 527
RseI	CAYNNNNRTG	1 cut(s)	795
SatI	GCNGC	8 cut(s)	231, 334, 635, 659, 662, 665, 668, 671
Sau3AI	GATC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	2 cut(s)	192, 516
ScrFI	CCNGG	2 cut(s)	344, 403
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	8 cut(s)	199, 232, 384, 396, 404, 636, 643, 745
SfaNI	GCATC	4 cut(s)	65, 344, 468, 673
SfcI	CTRYAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	2 cut(s)	387, 811
SmoI	CTYRAG	2 cut(s)	387, 811
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	2 cut(s)	55, 620
SsiI	CCGC	7 cut(s)	61, 172, 287, 662, 665, 686, 822
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	3 cut(s)	524, 762, 768
StyD4I	CCNGG	2 cut(s)	342, 401
TaaI	ACNGT	3 cut(s)	220, 422, 531
TasI	AATT	2 cut(s)	55, 620
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	664, 667
TfiI	GAWTC	1 cut(s)	647
TseFI	GTSAC	2 cut(s)	382, 422
TseI	GCWGC	6 cut(s)	230, 333, 634, 658, 667, 670
Tsp45I	GTSAC	2 cut(s)	382, 422
TspDTI	ATGAA	5 cut(s)	120, 228, 486, 632, 779
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	197
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	3 cut(s)	524, 762, 768
ZrmI	AGTACT	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.