Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

61189 .. 63416

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001417.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaaagctgctgcttcttctgctaatttcctcaagatccattcgaaacaactcctagaaaaaaggtcgatcatcaatccgatcatgtcatctgttctagcacgaacagggcgacatcgccaacgttatgagaacaattttcgccttgtttctggatgtatcccttaccggataacagaagacatcaatgatgaggatcatagcagcagcagcaatacccatattgaaaacaagatacaagttctcatggtttcttcacctgaccgcgacgaccgagtgttccctaaaggtggatgggaggatgatgagactgttttagaagctgcttgtcgggaagctttcgaggaatcaggggtgaaaggaacactaagacaggaaactcctctgggagtttgggagttcagaagcaaaagtaggcagaacatgtgcagcctggaaggaggctgcagaggctacatgtttgcattagaggtaactgaagagcttgacacctggccagagcagcaaaaccgtgatagagaatggctaaacataaaggaggcatttagagtgtgccggtatgaatggatgcgtagggcactggagcagtttctgagagttatggcgtcagataaggatgatgatgatgatggtactgtgggaaaagcagctgtagtaccagctgatgaagtagtagtggatgatcagatcatgaatcagatgacagaattatcaggagagtacgatgatcatgagaatacattagatgaggacttagttgagcccgaaccttgtggtcctcgtccagccatgatctccatgccaatgccattgccgtcgccggtgttatcgttgccattgtcatccagcaacgtcagatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

287

Amino Acids

32.68

Weight (kDa)

4.76

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	31, 204
AcoI	YGGCCR	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	3 cut(s)	634, 657, 722
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	423, 456
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	432, 491
AluBI	AGCT	6 cut(s)	8, 323, 338, 484, 650, 662
AluI	AGCT	6 cut(s)	8, 323, 338, 484, 650, 662
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	31, 204
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	249, 367
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	8 cut(s)	216, 219, 222, 310, 431, 441, 514, 659
BccI	CCATC	2 cut(s)	288, 623
BceAI	ACGGC	1 cut(s)	799
BciT130I	CCWGG	2 cut(s)	434, 493
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	2 cut(s)	682, 727
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	56, 98
BfmI	CTRYAG	2 cut(s)	445, 651
BfuI	GTATCC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	434, 493
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	434, 493
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	602
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	2 cut(s)	555, 820
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	434, 493
BseGI	GGATG	7 cut(s)	161, 299, 307, 573, 622, 685, 842
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	8 cut(s)	216, 219, 222, 310, 431, 441, 514, 659
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	169, 556, 821
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	580, 765
Bsp143I	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	585
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	3 cut(s)	690, 730, 860
BspMAI	CTGCAG	1 cut(s)	449
BspPI	GGATC	2 cut(s)	31, 204
BspQI	GCTCTTC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	809
BsrFI	RCCGGY	2 cut(s)	555, 820
BsrI	ACTGG	1 cut(s)	585
BssAI	RCCGGY	2 cut(s)	555, 820
BssMI	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
BssNI	GRCGYC	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	434, 493
Bst4CI	ACNGT	3 cut(s)	313, 512, 637
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	368, 593, 754
BstF5I	GGATG	7 cut(s)	161, 299, 307, 573, 622, 685, 842
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	9 cut(s)	39, 72, 84, 199, 685, 690, 730, 795, 860
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 210, 450, 502
BstNI	CCWGG	2 cut(s)	434, 493
BstNSI	RCATGY	2 cut(s)	427, 460
BstSCI	CCNGG	2 cut(s)	432, 491
BstSFI	CTRYAG	2 cut(s)	445, 651
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	8 cut(s)	216, 219, 222, 310, 431, 441, 514, 659
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	7 cut(s)	161, 299, 307, 573, 622, 685, 842
BtsIMutI	CAGTG	1 cut(s)	578
CaiI	CAGNNNCTG	1 cut(s)	592
CciI	TCATGA	3 cut(s)	690, 730, 860
Cfr10I	RCCGGY	2 cut(s)	555, 820
Cfr13I	GGNCC	1 cut(s)	776
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	633, 656, 721
CviAII	CATG	9 cut(s)	85, 247, 424, 457, 691, 731, 790, 799, 861
CviQI	GTAC	3 cut(s)	633, 656, 721
DdeI	CTNAG	3 cut(s)	368, 593, 754
DpnI	GATC	9 cut(s)	38, 71, 83, 198, 684, 689, 729, 794, 859
DpnII	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
EaeI	YGGCCR	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	432, 491
EcoT38I	GRGCYC	1 cut(s)	765
FaeI	CATG	9 cut(s)	88, 250, 427, 460, 694, 734, 793, 802, 864
FatI	CATG	9 cut(s)	84, 246, 423, 456, 690, 730, 789, 798, 860
FbaI	TGATCA	2 cut(s)	682, 727
FokI	GGATG	7 cut(s)	168, 306, 314, 580, 629, 692, 829
FriOI	GRGCYC	1 cut(s)	765
FspBI	CTAG	2 cut(s)	56, 98
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	3 cut(s)	169, 556, 821
HgaI	GACGC	1 cut(s)	594
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	9 cut(s)	88, 250, 427, 460, 694, 734, 793, 802, 864
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	347, 694
HpaII	CCGG	3 cut(s)	169, 556, 821
HphI	GGTGA	2 cut(s)	249, 367
Hpy188I	TCNGA	7 cut(s)	81, 404, 594, 610, 687, 699, 857
Hpy188III	TCNNGA	7 cut(s)	34, 153, 332, 691, 714, 731, 861
Hpy99I	CGWCG	2 cut(s)	272, 820
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	313, 512, 637
HpyCH4IV	ACGT	2 cut(s)	124, 852
HpyCH4V	TGCA	3 cut(s)	429, 447, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 210, 450, 502
HpyF3I	CTNAG	3 cut(s)	368, 593, 754
HpySE526I	ACGT	2 cut(s)	124, 852
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	9 cut(s)	88, 250, 427, 460, 694, 734, 793, 802, 864
Ksp22I	TGATCA	2 cut(s)	682, 727
Kzo9I	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	8 cut(s)	216, 219, 222, 310, 431, 441, 514, 659
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	2 cut(s)	56, 98
MaeII	ACGT	2 cut(s)	124, 852
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	9 cut(s)	38, 71, 83, 198, 684, 689, 729, 794, 859
MboI	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
MboII	GAAGA	4 cut(s)	9, 191, 246, 491
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	580, 765
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	3 cut(s)	25, 136, 707
MluNI	TGGCCA	1 cut(s)	496
Mox20I	TGGCCA	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	496
MslI	CAYNNNNRTG	1 cut(s)	803
Msp20I	TGGCCA	1 cut(s)	496
MspA1I	CMGCKG	2 cut(s)	650, 662
MspI	CCGG	3 cut(s)	169, 556, 821
MspR9I	CCNGG	2 cut(s)	434, 493
MvaI	CCWGG	2 cut(s)	434, 493
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	20, 210, 450, 502
NdeII	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
NlaIII	CATG	9 cut(s)	88, 250, 427, 460, 694, 734, 793, 802, 864
NspI	RCATGY	2 cut(s)	427, 460
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	3 cut(s)	690, 730, 860
PciI	ACATGT	2 cut(s)	423, 456
PciSI	GCTCTTC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	347, 694
PscI	ACATGT	2 cut(s)	423, 456
Psp1406I	AACGTT	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	432, 491
PspGI	CCWGG	2 cut(s)	432, 491
PspPI	GGNCC	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	650, 662
RsaI	GTAC	3 cut(s)	634, 657, 722
RsaNI	GTAC	3 cut(s)	633, 656, 721
RseI	CAYNNNNRTG	1 cut(s)	803
SapI	GCTCTTC	1 cut(s)	474
Sau3AI	GATC	9 cut(s)	36, 69, 81, 196, 682, 687, 727, 792, 857
Sau96I	GGNCC	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	434, 493
SduI	GDGCHC	2 cut(s)	580, 765
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	445, 651
SfuI	TTCGAA	1 cut(s)	44
SgrAI	CRCCGGYG	1 cut(s)	820
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	25, 136, 707
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	56, 98
StyD4I	CCNGG	2 cut(s)	432, 491
TaaI	ACNGT	3 cut(s)	313, 512, 637
TaiI	ACGT	2 cut(s)	127, 855
TaqI	TCGA	3 cut(s)	44, 68, 342
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	25, 136, 707
TfiI	GAWTC	2 cut(s)	347, 694
TscAI	CASTG	1 cut(s)	585
TspDTI	ATGAA	4 cut(s)	17, 576, 681, 707
TspRI	CASTG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	776
XceI	RCATGY	2 cut(s)	427, 460
XspI	CTAG	2 cut(s)	56, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.