Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

88360681 .. 88363633

Gene Structure 2953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAAGCTGCTGCTTCTTCTGCTAATTTCCTCAAGATCCATTCGAAACAACTCCTAGAAAAAAGGTCGATCATCAATCCGATCATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCTAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCTTTCGAGGAATCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGATGAGGACTTAATTGACCCGAACCTTGTGGTCCTCGTCCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

262

Amino Acids

30.08

Weight (kDa)

4.7

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	80 - 194	5.2e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	31, 204
AcoI	YGGCCR	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	3 cut(s)	631, 654, 719
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	420, 453
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	429, 488
AluBI	AGCT	6 cut(s)	8, 323, 338, 481, 647, 659
AluI	AGCT	6 cut(s)	8, 323, 338, 481, 647, 659
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	31, 204
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	2 cut(s)	249, 367
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 656
BccI	CCATC	2 cut(s)	288, 620
BciT130I	CCWGG	2 cut(s)	431, 490
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	2 cut(s)	679, 724
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	56, 98
BfmI	CTRYAG	2 cut(s)	442, 648
BfuI	GTATCC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	431, 490
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmrFI	CCNGG	2 cut(s)	431, 490
BmsI	GCATC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	602
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	431, 490
BseGI	GGATG	6 cut(s)	161, 299, 307, 570, 619, 682
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 656
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	169, 553
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	2 cut(s)	687, 727
BspMAI	CTGCAG	1 cut(s)	446
BspPI	GGATC	2 cut(s)	31, 204
BspQI	GCTCTTC	1 cut(s)	471
BspT104I	TTCGAA	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	552
BssMI	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
BssNI	GRCGYC	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	431, 490
Bst4CI	ACNGT	3 cut(s)	313, 509, 634
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	368, 590
BstF5I	GGATG	6 cut(s)	161, 299, 307, 570, 619, 682
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	7 cut(s)	39, 72, 84, 199, 682, 687, 727
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
BstNI	CCWGG	2 cut(s)	431, 490
BstNSI	RCATGY	2 cut(s)	424, 457
BstSCI	CCNGG	2 cut(s)	429, 488
BstSFI	CTRYAG	2 cut(s)	442, 648
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 656
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	6 cut(s)	161, 299, 307, 570, 619, 682
BtsIMutI	CAGTG	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	589
CciI	TCATGA	2 cut(s)	687, 727
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	772
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	630, 653, 718
CviAII	CATG	7 cut(s)	85, 247, 421, 454, 688, 728, 786
CviQI	GTAC	3 cut(s)	630, 653, 718
DdeI	CTNAG	2 cut(s)	368, 590
DpnI	GATC	7 cut(s)	38, 71, 83, 198, 681, 686, 726
DpnII	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	429, 488
FaeI	CATG	7 cut(s)	88, 250, 424, 457, 691, 731, 789
FatI	CATG	7 cut(s)	84, 246, 420, 453, 687, 727, 785
FbaI	TGATCA	2 cut(s)	679, 724
FokI	GGATG	6 cut(s)	168, 306, 314, 577, 626, 689
FspBI	CTAG	2 cut(s)	56, 98
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	169, 553
HgaI	GACGC	1 cut(s)	591
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	7 cut(s)	88, 250, 424, 457, 691, 731, 789
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	347, 691
HpaII	CCGG	2 cut(s)	169, 553
HphI	GGTGA	2 cut(s)	249, 367
Hpy188I	TCNGA	6 cut(s)	81, 401, 591, 607, 684, 696
Hpy188III	TCNNGA	6 cut(s)	34, 153, 332, 688, 711, 728
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	313, 509, 634
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	426, 444, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
HpyF3I	CTNAG	2 cut(s)	368, 590
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	7 cut(s)	88, 250, 424, 457, 691, 731, 789
Ksp22I	TGATCA	2 cut(s)	679, 724
Kzo9I	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 656
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	56, 98
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	7 cut(s)	38, 71, 83, 198, 681, 686, 726
MboI	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
MboII	GAAGA	4 cut(s)	9, 191, 246, 488
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	577
MlsI	TGGCCA	1 cut(s)	493
MluCI	AATT	4 cut(s)	25, 136, 704, 753
MluNI	TGGCCA	1 cut(s)	493
Mox20I	TGGCCA	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	493
MseI	TTAA	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	493
MspA1I	CMGCKG	2 cut(s)	647, 659
MspI	CCGG	2 cut(s)	169, 553
MspR9I	CCNGG	2 cut(s)	431, 490
MvaI	CCWGG	2 cut(s)	431, 490
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
NdeII	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
NlaIII	CATG	7 cut(s)	88, 250, 424, 457, 691, 731, 789
NspI	RCATGY	2 cut(s)	424, 457
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	2 cut(s)	687, 727
PciI	ACATGT	2 cut(s)	420, 453
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	347, 691
PscI	ACATGT	2 cut(s)	420, 453
Psp1406I	AACGTT	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	429, 488
PspGI	CCWGG	2 cut(s)	429, 488
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	647, 659
RsaI	GTAC	3 cut(s)	631, 654, 719
RsaNI	GTAC	3 cut(s)	630, 653, 718
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	752
Sau3AI	GATC	7 cut(s)	36, 69, 81, 196, 679, 684, 724
Sau96I	GGNCC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	431, 490
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	2 cut(s)	442, 648
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	25, 136, 704, 753
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	56, 98
StyD4I	CCNGG	2 cut(s)	429, 488
TaaI	ACNGT	3 cut(s)	313, 509, 634
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	44, 68, 342
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	4 cut(s)	25, 136, 704, 753
TfiI	GAWTC	2 cut(s)	347, 691
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TscAI	CASTG	1 cut(s)	582
TspDTI	ATGAA	4 cut(s)	17, 573, 678, 704
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	772
XceI	RCATGY	2 cut(s)	424, 457
XspI	CTAG	2 cut(s)	56, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.