Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

59853199 .. 59858494

Gene Structure 5296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG283900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTTCTTCACCAGATCGAGATGATCTTGTCTTTCCAAAGGGAGGATGGGAGAATGACGAAACCATGCATGAAGCTGCTTGTCGCGAGGCCTTAGAAGAAGCAGGAGTGAAGGGAGTTCTTGGTGAAACTCCACTAGGACAATGGGAGTTCAGAAGCAAGAGCAAACAGAACAATGGCAGCCTGCAAGGTGGTTGTAGAGGTTACATGTTTGCACTAAGGGTTACTGAAGAGCTCGACTCCTGGCCCGAGCAGGCCATCTACGGAAGGAAATGGGTTACCGTAGAAGACGCATTCAAATTCTGTCGGTATGACTGGATGCGAGAAGCTCTTAGAAAGCTTTTGATAGCACTCTCAGATAACACGGAAAATGGCCCGAGAGAAGAACTGGATGGACTTCCTTTGAGGCCAGTTATCTCAGAAGTCGGATCAGAGCATCAAATATCATCACCATCCGGTTGCTTTGCTAGTCATTCTAGTGTTCAGCAGCTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

166

Amino Acids

18.57

Weight (kDa)

4.87

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	10 - 113	1.5e-10	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	6 cut(s)	77, 235, 329, 340, 490, 497
AluI	AGCT	6 cut(s)	77, 235, 329, 340, 490, 497
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	2 cut(s)	248, 376
AoxI	GGCC	5 cut(s)	90, 245, 255, 373, 407
ApeKI	GCWGC	4 cut(s)	77, 180, 487, 494
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	246, 374
AsuHPI	GGTGA	3 cut(s)	3, 137, 441
AvaI	CYCGRG	2 cut(s)	248, 376
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	64, 192
BccI	CCATC	4 cut(s)	42, 266, 386, 460
BciT130I	CCWGG	1 cut(s)	244
BfaI	CTAG	3 cut(s)	137, 468, 477
BisI	GCNGC	4 cut(s)	78, 181, 488, 495
BlsI	GCNGC	4 cut(s)	79, 182, 489, 496
Bme1390I	CCNGG	1 cut(s)	244
BmeT110I	CYCGRG	2 cut(s)	248, 376
BmgT120I	GGNCC	2 cut(s)	246, 374
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	309, 445
BpiI	GAAGAC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	320, 393, 410
BseBI	CCWGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	53, 324, 397, 452
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	369, 432
BseNI	ACTGG	3 cut(s)	320, 393, 410
BseXI	GCAGC	2 cut(s)	64, 192
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	92, 247, 257, 375, 409
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	2 cut(s)	248, 376
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	5 cut(s)	92, 247, 257, 375, 409
BsoBI	CYCGRG	2 cut(s)	248, 376
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	16, 25, 428
Bsp68I	TCGCGA	1 cut(s)	87
BspANI	GGCC	5 cut(s)	92, 247, 257, 375, 409
BspCNI	CTCAG	2 cut(s)	368, 431
BspFNI	CGCG	1 cut(s)	87
BspPI	GGATC	1 cut(s)	436
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	320, 393, 410
BssMI	GATC	3 cut(s)	16, 25, 428
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	185, 255, 492
BstDEI	CTNAG	5 cut(s)	94, 218, 332, 355, 418
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	53, 324, 397, 452
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	19, 28, 431
BstMBI	GATC	3 cut(s)	16, 25, 428
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	64, 192
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	92, 247, 257, 375, 409
BtsCI	GGATG	4 cut(s)	53, 324, 397, 452
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	185, 255, 492
Cfr13I	GGNCC	2 cut(s)	246, 374
CseI	GACGC	1 cut(s)	299
CviAII	CATG	3 cut(s)	67, 71, 208
DdeI	CTNAG	5 cut(s)	94, 218, 332, 355, 418
DpnI	GATC	3 cut(s)	18, 27, 430
DpnII	GATC	3 cut(s)	16, 25, 428
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	248, 376
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	3 cut(s)	70, 74, 211
FaiI	YATR	4 cut(s)	68, 72, 209, 312
FatI	CATG	3 cut(s)	66, 70, 207
Fnu4HI	GCNGC	4 cut(s)	78, 181, 488, 495
FokI	GGATG	4 cut(s)	60, 331, 404, 439
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	78, 181, 488, 495
FspBI	CTAG	3 cut(s)	137, 468, 477
GluI	GCNGC	4 cut(s)	78, 181, 488, 495
HaeIII	GGCC	5 cut(s)	92, 247, 257, 375, 409
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	70, 74, 211
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	3, 137, 441
Hpy188I	TCNGA	5 cut(s)	155, 358, 421, 428, 433
Hpy188III	TCNNGA	2 cut(s)	20, 86
HpyAV	CCTTC	2 cut(s)	106, 261
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	70, 187, 215
HpyF3I	CTNAG	5 cut(s)	94, 218, 332, 355, 418
Hsp92II	CATG	3 cut(s)	70, 74, 211
Kzo9I	GATC	3 cut(s)	16, 25, 428
LguI	GCTCTTC	1 cut(s)	225
Lsp1109I	GCAGC	2 cut(s)	64, 192
LweI	GCATC	2 cut(s)	309, 445
MaeI	CTAG	3 cut(s)	137, 468, 477
MaeIII	GTNAC	3 cut(s)	203, 223, 277
MalI	GATC	3 cut(s)	18, 27, 430
MboI	GATC	3 cut(s)	16, 25, 428
MboII	GAAGA	4 cut(s)	110, 242, 299, 395
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	4 cut(s)	38, 82, 194, 399
Mph1103I	ATGCAT	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	87
NdeII	GATC	3 cut(s)	16, 25, 428
NlaIII	CATG	3 cut(s)	70, 74, 211
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	92
PciI	ACATGT	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	79, 182, 489, 496
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	242
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	246, 374
RruI	TCGCGA	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	4 cut(s)	78, 181, 488, 495
Sau3AI	GATC	3 cut(s)	16, 25, 428
Sau96I	GGNCC	2 cut(s)	246, 374
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	79, 193, 205, 237, 331, 342, 492, 499
SfaNI	GCATC	2 cut(s)	309, 445
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	1 cut(s)	299
SseBI	AGGCCT	1 cut(s)	92
SspMI	CTAG	3 cut(s)	137, 468, 477
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	19, 237
TasI	AATT	1 cut(s)	299
TseI	GCWGC	4 cut(s)	77, 180, 487, 494
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	2 cut(s)	279, 380
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	2 cut(s)	45, 141
XspI	CTAG	3 cut(s)	137, 468, 477
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.