Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

82761945 .. 82764450

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G055360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCGTTGCTTTGTTTTCTTTCTCGTTTGTTTAATGATTGCTTTTGTAGCCTAGAAAAAAGGTCGATCATCAATCCGATCATGTCATCTGTTCTAGCAAGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCTAAAGGAGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCTTTCGAGGAATCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGCCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGACAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCGGCCATGATCTCCATGCCAATGCCATTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

284

Amino Acids

32.52

Weight (kDa)

4.64

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	79 - 193	5.3e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	2 cut(s)	488, 777
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	3 cut(s)	628, 651, 716
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	417, 450
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	426, 485
AluBI	AGCT	5 cut(s)	320, 335, 478, 644, 656
AluI	AGCT	5 cut(s)	320, 335, 478, 644, 656
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	2 cut(s)	488, 777
ApeKI	GCWGC	7 cut(s)	201, 204, 207, 320, 423, 496, 641
AspS9I	GGNCC	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	246, 364
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	7 cut(s)	213, 216, 219, 307, 435, 508, 653
BccI	CCATC	2 cut(s)	285, 617
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	2 cut(s)	428, 487
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	2 cut(s)	676, 721
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	53, 95
BfmI	CTRYAG	2 cut(s)	439, 645
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	7 cut(s)	202, 205, 208, 321, 424, 497, 642
BlsI	GCNGC	7 cut(s)	203, 206, 209, 322, 425, 498, 643
Bme1390I	CCNGG	2 cut(s)	428, 487
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	767
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	428, 487
BmsI	GCATC	1 cut(s)	552
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	599
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	2 cut(s)	549, 811
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	800
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	428, 487
BseGI	GGATG	7 cut(s)	158, 296, 304, 567, 616, 679, 833
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	7 cut(s)	213, 216, 219, 307, 435, 508, 653
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	490, 779
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	4 cut(s)	166, 550, 776, 812
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	490, 779
Bsp1286I	GDGCHC	2 cut(s)	574, 756
Bsp143I	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	490, 779
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	3 cut(s)	684, 724, 851
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	800
BsrFI	RCCGGY	2 cut(s)	549, 811
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	2 cut(s)	549, 811
BssMI	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
BssNI	GRCGYC	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	428, 487
Bst4CI	ACNGT	3 cut(s)	310, 506, 631
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	365, 587
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	7 cut(s)	158, 296, 304, 567, 616, 679, 833
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	8 cut(s)	69, 81, 196, 679, 684, 724, 786, 851
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 207, 496
BstNI	CCWGG	2 cut(s)	428, 487
BstNSI	RCATGY	2 cut(s)	421, 454
BstSCI	CCNGG	2 cut(s)	426, 485
BstSFI	CTRYAG	2 cut(s)	439, 645
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	7 cut(s)	213, 216, 219, 307, 435, 508, 653
BstV2I	GAAGAC	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	490, 779
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	7 cut(s)	158, 296, 304, 567, 616, 679, 833
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	3 cut(s)	684, 724, 851
Cfr10I	RCCGGY	2 cut(s)	549, 811
Cfr13I	GGNCC	1 cut(s)	767
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	627, 650, 715
CviAII	CATG	9 cut(s)	82, 244, 418, 451, 685, 725, 781, 790, 852
CviQI	GTAC	3 cut(s)	627, 650, 715
DdeI	CTNAG	2 cut(s)	365, 587
DpnI	GATC	8 cut(s)	68, 80, 195, 678, 683, 723, 785, 850
DpnII	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
EaeI	YGGCCR	2 cut(s)	488, 777
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	426, 485
EcoT38I	GRGCYC	1 cut(s)	756
FaeI	CATG	9 cut(s)	85, 247, 421, 454, 688, 728, 784, 793, 855
FatI	CATG	9 cut(s)	81, 243, 417, 450, 684, 724, 780, 789, 851
FbaI	TGATCA	2 cut(s)	676, 721
Fnu4HI	GCNGC	7 cut(s)	202, 205, 208, 321, 424, 497, 642
FokI	GGATG	7 cut(s)	165, 303, 311, 574, 623, 686, 820
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	7 cut(s)	202, 205, 208, 321, 424, 497, 642
FspBI	CTAG	2 cut(s)	53, 95
GluI	GCNGC	7 cut(s)	202, 205, 208, 321, 424, 497, 642
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	490, 779
HapII	CCGG	4 cut(s)	166, 550, 776, 812
HgaI	GACGC	1 cut(s)	588
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	9 cut(s)	85, 247, 421, 454, 688, 728, 784, 793, 855
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	2 cut(s)	344, 688
HpaII	CCGG	4 cut(s)	166, 550, 776, 812
HphI	GGTGA	2 cut(s)	246, 364
Hpy188I	TCNGA	7 cut(s)	78, 398, 588, 604, 681, 693, 848
Hpy188III	TCNNGA	6 cut(s)	150, 329, 685, 708, 725, 852
Hpy99I	CGWCG	2 cut(s)	269, 811
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	3 cut(s)	310, 506, 631
HpyCH4IV	ACGT	2 cut(s)	121, 843
HpyCH4V	TGCA	3 cut(s)	423, 441, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 207, 496
HpyF3I	CTNAG	2 cut(s)	365, 587
HpySE526I	ACGT	2 cut(s)	121, 843
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	9 cut(s)	85, 247, 421, 454, 688, 728, 784, 793, 855
Ksp22I	TGATCA	2 cut(s)	676, 721
Kzo9I	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	434, 577
Lsp1109I	GCAGC	7 cut(s)	213, 216, 219, 307, 435, 508, 653
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	53, 95
MaeII	ACGT	2 cut(s)	121, 843
MaeIII	GTNAC	2 cut(s)	466, 506
MalI	GATC	8 cut(s)	68, 80, 195, 678, 683, 723, 785, 850
MboI	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
MboII	GAAGA	3 cut(s)	188, 243, 485
MhlI	GDGCHC	2 cut(s)	574, 756
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	3 cut(s)	133, 701, 747
MluNI	TGGCCA	1 cut(s)	490
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	2 cut(s)	33, 746
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	490
MspA1I	CMGCKG	2 cut(s)	644, 656
MspI	CCGG	4 cut(s)	166, 550, 776, 812
MspR9I	CCNGG	2 cut(s)	428, 487
MvaI	CCWGG	2 cut(s)	428, 487
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	48, 207, 496
NdeII	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
NlaIII	CATG	9 cut(s)	85, 247, 421, 454, 688, 728, 784, 793, 855
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	2 cut(s)	421, 454
PagI	TCATGA	3 cut(s)	684, 724, 851
PciI	ACATGT	2 cut(s)	417, 450
PciSI	GCTCTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	344, 688
PkrI	GCNGC	7 cut(s)	203, 206, 209, 322, 425, 498, 643
PscI	ACATGT	2 cut(s)	417, 450
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	426, 485
PspGI	CCWGG	2 cut(s)	426, 485
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	644, 656
RsaI	GTAC	3 cut(s)	628, 651, 716
RsaNI	GTAC	3 cut(s)	627, 650, 715
RseI	CAYNNNNRTG	1 cut(s)	794
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	33, 746
SatI	GCNGC	7 cut(s)	202, 205, 208, 321, 424, 497, 642
Sau3AI	GATC	8 cut(s)	66, 78, 193, 676, 681, 721, 783, 848
Sau96I	GGNCC	1 cut(s)	767
ScrFI	CCNGG	2 cut(s)	428, 487
SduI	GDGCHC	2 cut(s)	574, 756
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	2 cut(s)	439, 645
SgrAI	CRCCGGYG	1 cut(s)	811
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	1 cut(s)	794
Sse9I	AATT	3 cut(s)	133, 701, 747
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	53, 95
StyD4I	CCNGG	2 cut(s)	426, 485
TaaI	ACNGT	3 cut(s)	310, 506, 631
TaiI	ACGT	2 cut(s)	124, 846
TaqI	TCGA	2 cut(s)	65, 339
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	133, 701, 747
TfiI	GAWTC	2 cut(s)	344, 688
Tru1I	TTAA	2 cut(s)	33, 746
Tru9I	TTAA	2 cut(s)	33, 746
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	7 cut(s)	201, 204, 207, 320, 423, 496, 641
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	570, 675, 701
TspRI	CASTG	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	285
XceI	RCATGY	2 cut(s)	421, 454
XspI	CTAG	2 cut(s)	53, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.