Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

50491101 .. 50493935

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCTTGTTTGACAGCCAGAACAGGGCGGCATAGACAGCGGTACGAGGATCAATTGAGGCTTGTTTCAGGATGTATACCTTATAAGTTTGAAGAGACGGTAGGGAGTAGCAATTGCAATGTAGAGAAAAAGTTGCTTGTTCTCATGATTTCTTCACCAGATCGAGATGATCTTGTCTTTCCAAAGGGAGGATGGGAGAATGACGAAACCATGCATGAAGCTGCTTGTCGCGAGGCCTTAGAAGAAGCAGGAGTGAAGGGAGTTCTTGGTGAAACTCCACTAGGACAATGGGAGTTCAGAAGCAAGAGCAAACAGAACAATGGCAGCCTGCAAGGTGGTTGTAGAGGTTACATGTTTGCACTAAGGGTTACTGAAGAGCTCGACTCCTGGCCCGAGCAGGCCATCTACGGAAGGAAATGGGTTACCGTAGAAGACGCATTCAAATTCTGTCGGTATGACTGGATGCGAGAAGCTCTTAGAAAGCTTTTGATAGCACTCTCAGATAACACGGAAAATGGCCCGAGAGAAGAACTGGATGGATTTCCTTTGAGGCCAGTTATCTCAGAAGTCGGATCAGAGCATCAAATATCATCACCATCCGGTTGCTTTGCTAGTCATTCTAGTGTTCAGCAGCTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

5.37

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	40 - 161	1.8e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	28, 40
AclWI	GGATC	2 cut(s)	57, 580
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	24, 188
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	92, 442
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	221, 379, 473, 484, 634, 641
AluI	AGCT	6 cut(s)	221, 379, 473, 484, 634, 641
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	57, 580
Ama87I	CYCGRG	2 cut(s)	392, 520
AoxI	GGCC	5 cut(s)	234, 389, 399, 517, 551
ApeKI	GCWGC	4 cut(s)	221, 324, 631, 638
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	390, 518
AsuHPI	GGTGA	3 cut(s)	147, 281, 585
AvaI	CYCGRG	2 cut(s)	392, 520
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	208, 336
BccI	CCATC	4 cut(s)	186, 410, 530, 604
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	281, 612, 621
BisI	GCNGC	5 cut(s)	29, 222, 325, 632, 639
BlsI	GCNGC	5 cut(s)	30, 223, 326, 633, 640
Bme1390I	CCNGG	1 cut(s)	388
BmeT110I	CYCGRG	2 cut(s)	392, 520
BmgT120I	GGNCC	2 cut(s)	390, 518
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	453, 589
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 188
Bse1I	ACTGG	3 cut(s)	464, 537, 554
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	388
BseGI	GGATG	5 cut(s)	77, 197, 468, 541, 596
BseLI	CCNNNNNNNGG	2 cut(s)	24, 188
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	513, 576
BseNI	ACTGG	3 cut(s)	464, 537, 554
BseXI	GCAGC	2 cut(s)	208, 336
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	5 cut(s)	236, 391, 401, 519, 553
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	2 cut(s)	392, 520
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	24, 188
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	5 cut(s)	236, 391, 401, 519, 553
BsoBI	CYCGRG	2 cut(s)	392, 520
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	49, 160, 169, 572
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	2 cut(s)	28, 40
BspANI	GGCC	5 cut(s)	236, 391, 401, 519, 553
BspCNI	CTCAG	2 cut(s)	512, 575
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	2 cut(s)	57, 580
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	464, 537, 554
BssMI	GATC	4 cut(s)	49, 160, 169, 572
BssNAI	GTATAC	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	100, 427
Bst6I	CTCTTC	2 cut(s)	87, 369
BstC8I	GCNNGC	3 cut(s)	329, 399, 636
BstDEI	CTNAG	5 cut(s)	238, 362, 476, 499, 562
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	5 cut(s)	77, 197, 468, 541, 596
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	52, 163, 172, 575
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	49, 160, 169, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	208, 336
BstV2I	GAAGAC	1 cut(s)	438
BstZ17I	GTATAC	1 cut(s)	77
BsuRI	GGCC	5 cut(s)	236, 391, 401, 519, 553
BtsCI	GGATG	5 cut(s)	77, 197, 468, 541, 596
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	329, 399, 636
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	390, 518
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	4 cut(s)	145, 211, 215, 352
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	5 cut(s)	238, 362, 476, 499, 562
DpnI	GATC	4 cut(s)	51, 162, 171, 574
DpnII	GATC	4 cut(s)	49, 160, 169, 572
Eam1104I	CTCTTC	2 cut(s)	87, 369
EarI	CTCTTC	2 cut(s)	87, 369
Ecl136II	GAGCTC	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	392, 520
Eco91I	GGTNACC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	148, 214, 218, 355
FaiI	YATR	8 cut(s)	33, 77, 84, 146, 212, 216, 353, 456
FatI	CATG	4 cut(s)	144, 210, 214, 351
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	29, 222, 325, 632, 639
FokI	GGATG	5 cut(s)	84, 204, 475, 548, 583
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	29, 222, 325, 632, 639
FspBI	CTAG	3 cut(s)	281, 612, 621
GluI	GCNGC	5 cut(s)	29, 222, 325, 632, 639
HaeIII	GGCC	5 cut(s)	236, 391, 401, 519, 553
HapII	CCGG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	148, 214, 218, 355
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	3 cut(s)	147, 281, 585
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	5 cut(s)	299, 502, 565, 572, 577
Hpy188III	TCNNGA	4 cut(s)	69, 145, 164, 230
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	250, 405
HpyCH4III	ACNGT	2 cut(s)	100, 427
HpyCH4V	TGCA	4 cut(s)	117, 214, 331, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	5 cut(s)	238, 362, 476, 499, 562
Hsp92II	CATG	4 cut(s)	148, 214, 218, 355
Kzo9I	GATC	4 cut(s)	49, 160, 169, 572
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	208, 336
LweI	GCATC	2 cut(s)	453, 589
MaeI	CTAG	3 cut(s)	281, 612, 621
MaeIII	GTNAC	3 cut(s)	347, 367, 421
MalI	GATC	4 cut(s)	51, 162, 171, 574
MboI	GATC	4 cut(s)	49, 160, 169, 572
MboII	GAAGA	6 cut(s)	104, 144, 254, 386, 443, 539
MfeI	CAATTG	2 cut(s)	53, 112
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	3 cut(s)	53, 112, 443
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	6 cut(s)	40, 51, 182, 226, 338, 543
Mph1103I	ATGCAT	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	388
MunI	CAATTG	2 cut(s)	53, 112
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	49, 160, 169, 572
NlaIII	CATG	4 cut(s)	148, 214, 218, 355
NruI	TCGCGA	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	236
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	437
PkrI	GCNGC	5 cut(s)	30, 223, 326, 633, 640
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	386
PspEI	GGTNACC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	390, 518
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	5 cut(s)	29, 222, 325, 632, 639
Sau3AI	GATC	4 cut(s)	49, 160, 169, 572
Sau96I	GGNCC	2 cut(s)	390, 518
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	9 cut(s)	82, 223, 337, 349, 381, 475, 486, 636, 643
SfaNI	GCATC	2 cut(s)	453, 589
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	3 cut(s)	53, 112, 443
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	28, 40
SspMI	CTAG	3 cut(s)	281, 612, 621
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	100, 427
TaqI	TCGA	2 cut(s)	163, 381
TasI	AATT	3 cut(s)	53, 112, 443
TauI	GCSGC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	221, 324, 631, 638
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	2 cut(s)	423, 524
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	189, 285
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	3 cut(s)	281, 612, 621
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.