Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

22630308 .. 22635539

Gene Structure 5232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G212800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTTGTTTAACAGCAAGAACAGGGAGGCAGAGACAACGTTATGAGGGCCATTTGAGGCTTGTTTCAGGGTGTATTCCTTATAAGTTTGAAAAGAGTGTTGGGGGTTGCAATCGCAGTATGGAGAAAGAATTGCTTGTTCTCATGATTTCTTCACCAAGTCGGGATGATCTTGTGTTTCCAAAGGGCGGATGGGAGGATGATGAAACGATGAGTGAAGCTGCCTGTCGTGAGGCCTGGGAGGAAGCAGGAGTGAAGGGAGTTCTTGGTGAAACTCCACTGGGAGATTGGGAGTTCAGAAGCAAGAGCAAACAGAATAGCTGCAGCCTGCAAGGAGGTTGTAGAGGTTTCATGTTTGCAATGGAGGTGACTGAAGAGCTCGACTCCTGGCCCGAGCAGGCTAACTATGGAAGGAAATGGCTTACCAAAGAAGAAGCATTCAGAGTCTGTCGGTATGACTGGATGCGGGAAGCGCTTAAAAAATTTGTGACAGCTCTCGCAGAGAGCAGGGAAAATGACACAATAAAAGAACTGGAAGAACTTCCTTTGAGGCCAATCTCAGAAGTTGAGCATCAAATGCCATCACAAGGCTGCTTTGGCAGTCATCCTAGCATCCAGCAGCTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

211

Amino Acids

23.91

Weight (kDa)

5.31

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AciI	CCGC	2 cut(s)	189, 466
AclI	AACGTT	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	393
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	2 cut(s)	188, 587
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	236, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	6 cut(s)	221, 321, 379, 494, 622, 629
AluI	AGCT	6 cut(s)	221, 321, 379, 494, 622, 629
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	392
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	4 cut(s)	49, 234, 389, 551
ApeKI	GCWGC	6 cut(s)	221, 321, 324, 591, 619, 626
ApoI	RAATTY	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	49, 390
AsuHPI	GGTGA	3 cut(s)	147, 281, 379
AvaI	CYCGRG	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	208, 308, 336, 578
BccI	CCATC	2 cut(s)	186, 589
BciT130I	CCWGG	2 cut(s)	238, 388
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	6 cut(s)	222, 322, 325, 592, 620, 627
BlsI	GCNGC	6 cut(s)	223, 323, 326, 593, 621, 628
Bme1390I	CCNGG	2 cut(s)	238, 388
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	49, 390
BmrFI	CCNGG	2 cut(s)	238, 388
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	453, 580, 621
BmuI	ACTGGG	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 587
Bse1I	ACTGG	3 cut(s)	285, 464, 537
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	238, 388
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	6 cut(s)	172, 197, 205, 468, 604, 612
BseLI	CCNNNNNNNGG	2 cut(s)	188, 587
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	3 cut(s)	285, 464, 537
BseXI	GCAGC	4 cut(s)	208, 308, 336, 578
BshFI	GGCC	4 cut(s)	51, 236, 391, 553
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	188, 587
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	4 cut(s)	51, 236, 391, 553
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	189, 466
BspANI	GGCC	4 cut(s)	51, 236, 391, 553
BspCNI	CTCAG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	285, 464, 537
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	238, 388
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	329, 399, 624
BstDEI	CTNAG	1 cut(s)	559
BstF5I	GGATG	6 cut(s)	172, 197, 205, 468, 604, 612
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 577, 597
BstNI	CCWGG	2 cut(s)	238, 388
BstSCI	CCNGG	2 cut(s)	236, 386
BstSFI	CTRYAG	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	208, 308, 336, 578
BsuRI	GGCC	4 cut(s)	51, 236, 391, 553
BtsCI	GGATG	6 cut(s)	172, 197, 205, 468, 604, 612
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	329, 399, 624
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	49, 390
CviAII	CATG	2 cut(s)	145, 352
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	236, 386
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	2 cut(s)	148, 355
FaiI	YATR	7 cut(s)	45, 84, 122, 146, 353, 408, 456
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	2 cut(s)	144, 351
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	6 cut(s)	222, 322, 325, 592, 620, 627
FokI	GGATG	6 cut(s)	179, 204, 212, 475, 591, 599
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	6 cut(s)	222, 322, 325, 592, 620, 627
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	6 cut(s)	222, 322, 325, 592, 620, 627
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	51, 236, 391, 553
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	148, 355
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	2 cut(s)	383, 444
HphI	GGTGA	3 cut(s)	147, 281, 379
Hpy188I	TCNGA	3 cut(s)	299, 443, 562
Hpy188III	TCNNGA	3 cut(s)	145, 164, 230
HpyAV	CCTTC	2 cut(s)	250, 405
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	111, 324, 331, 359, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 577, 597
HpyF3I	CTNAG	1 cut(s)	559
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	148, 355
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	4 cut(s)	208, 308, 336, 578
LweI	GCATC	3 cut(s)	453, 580, 621
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	367, 487
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	4 cut(s)	144, 386, 443, 548
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	131, 482
MlyI	GAGTC	2 cut(s)	377, 453
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	2 cut(s)	11, 477
MspR9I	CCNGG	2 cut(s)	238, 388
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	238, 388
MwoI	GCNNNNNNNGC	3 cut(s)	472, 577, 597
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	148, 355
NmuCI	GTSAC	2 cut(s)	367, 487
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	540
PkrI	GCNGC	6 cut(s)	223, 323, 326, 593, 621, 628
PleI	GAGTC	2 cut(s)	377, 452
PpsI	GAGTC	2 cut(s)	377, 452
PsiI	TTATAA	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	236, 386
PspGI	CCWGG	2 cut(s)	236, 386
PspPI	GGNCC	2 cut(s)	49, 390
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	11, 477
SatI	GCNGC	6 cut(s)	222, 322, 325, 592, 620, 627
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	49, 390
SchI	GAGTC	2 cut(s)	377, 453
ScrFI	CCNGG	2 cut(s)	238, 388
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	453, 580, 621
SfcI	CTRYAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	131, 482
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	189, 466
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	236, 386
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	131, 482
Tru1I	TTAA	2 cut(s)	11, 477
Tru9I	TTAA	2 cut(s)	11, 477
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	367, 487
TseI	GCWGC	6 cut(s)	221, 321, 324, 591, 619, 626
Tsp45I	GTSAC	2 cut(s)	367, 487
TspDTI	ATGAA	2 cut(s)	219, 340
TspRI	CASTG	1 cut(s)	285
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	2 cut(s)	189, 285
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.