Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

221165 .. 223151

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1001600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCATCTTCTGTGCTACTAGCGCGAACTGGGCGACATCGGCAACGCTATGACAACAATTTCCGACTCGTTTCTGGATGCATTCCTTACCGGATAGCAGAAGACGATGGAGACGACCAATTTGGTGATATTGAGAACAGGATACAAGTTCTTATGGTTTCTTCACCAGATCGTCATGACAGAGTCTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGTGAAGCCTTTGAGGAAGCAGGGGTCAAAGGAACCCTAAGAGAAACTCCGCTGGGAGTATGGGAGTTCAGAAGCAAAAGTAGAGAGGAAATGTGCAGCCTCAGCCTGGATGGAGGATGCAGAGGATACATGTTTGCGTTGGAGGTCACTCTAGAGCTTGATACCTGGCCAGAGCAGCTAAACCGTGACAGAAAATGGCTAAGCATAAAGGAGGCTTTTAGAGTCTGCCGGTATGAATGGATGCGCAAAGCGCTGGAGCAGTTTCTAAGAGTTATGGCAGAAGTTTCAATCTGTGATGATGATGATGATATTGATGAAGGTGTACAAGTGAAAGTTGTGGAGATGATGACGGGAGAAGATCAGATGAAAGGAGAGGAGCTGCCATCTTCGGATTCTACCCTGCACCCACTGCCGCAGGCGGCCTCTTCATCAGATGTGGAGCATGTGGTGGCTGAATGTAAAATAGTGTCGTCAAACTGCTACATAAAGCCTGCTTCTTCAAGTGCTAGTCAAATGGTGATCAGTTCATTGTCATGGCCAAGGGGTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

264

Amino Acids

29.82

Weight (kDa)

4.76

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	49 - 166	6.1e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	25
AciI	CCGC	3 cut(s)	287, 650, 656
AcoI	YGGCCR	2 cut(s)	404, 773
AfaI	GTAC	1 cut(s)	561
AfeI	AGCGCT	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	197, 343
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	525, 738
AjnI	CCWGG	2 cut(s)	342, 401
AluBI	AGCT	4 cut(s)	230, 394, 415, 616
AluI	AGCT	4 cut(s)	230, 394, 415, 616
Alw26I	GTCTC	2 cut(s)	105, 209
Aor51HI	AGCGCT	1 cut(s)	489
AoxI	GGCC	3 cut(s)	404, 657, 773
ApeKI	GCWGC	4 cut(s)	230, 333, 412, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	3 cut(s)	25, 483, 490
AsuHPI	GGTGA	3 cut(s)	137, 156, 766
BalI	TGGCCA	2 cut(s)	406, 775
BbsI	GAAGAC	2 cut(s)	108, 178
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	217, 345, 424, 603
BccI	CCATC	4 cut(s)	101, 195, 341, 628
BciT130I	CCWGG	2 cut(s)	344, 403
BciVI	GTATCC	2 cut(s)	135, 356
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	2 cut(s)	105, 209
BfaI	CTAG	3 cut(s)	20, 389, 744
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	2 cut(s)	135, 356
BisI	GCNGC	6 cut(s)	231, 334, 413, 617, 650, 657
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	6 cut(s)	232, 335, 414, 618, 651, 658
Bme1390I	CCNGG	2 cut(s)	344, 403
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	344, 403
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	3 cut(s)	68, 344, 468
BmuI	ACTGGG	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	108, 178
BpmI	CTGGAG	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	776
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 343
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	344, 403
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	6 cut(s)	83, 206, 214, 352, 359, 483
BseLI	CCNNNNNNNGG	2 cut(s)	197, 343
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	4 cut(s)	217, 345, 424, 603
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	2 cut(s)	352, 623
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	406, 659, 775
BsiSI	CCGG	2 cut(s)	91, 466
BslI	CCNNNNNNNGG	2 cut(s)	197, 343
BsmAI	GTCTC	2 cut(s)	105, 209
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	406, 659, 775
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	169, 595, 756
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	3 cut(s)	287, 650, 656
BspANI	GGCC	3 cut(s)	406, 659, 775
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	3 cut(s)	169, 595, 756
BssT1I	CCWWGG	1 cut(s)	776
Bst2UI	CCWGG	2 cut(s)	344, 403
Bst4CI	ACNGT	2 cut(s)	220, 422
Bst6I	CTCTTC	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstAUI	TGTACA	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	654, 729
BstDEI	CTNAG	4 cut(s)	275, 338, 437, 503
BstF5I	GGATG	6 cut(s)	83, 206, 214, 352, 359, 483
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	25, 483, 490
BstKTI	GATC	3 cut(s)	172, 598, 759
BstMAI	GTCTC	2 cut(s)	105, 209
BstMBI	GATC	3 cut(s)	169, 595, 756
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 31, 40, 339, 412, 487, 646
BstNI	CCWGG	2 cut(s)	344, 403
BstNSI	RCATGY	2 cut(s)	370, 683
BstSCI	CCNGG	2 cut(s)	342, 401
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	4 cut(s)	217, 345, 424, 603
BstV2I	GAAGAC	2 cut(s)	108, 178
BsuI	GTATCC	2 cut(s)	135, 356
BsuRI	GGCC	3 cut(s)	406, 659, 775
BtsCI	GGATG	6 cut(s)	83, 206, 214, 352, 359, 483
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	654, 729
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	3 cut(s)	25, 483, 490
Cfr10I	RCCGGY	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	4 cut(s)	176, 367, 680, 771
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	4 cut(s)	275, 338, 437, 503
DpnI	GATC	3 cut(s)	171, 597, 758
DpnII	GATC	3 cut(s)	169, 595, 756
EaeI	YGGCCR	2 cut(s)	404, 773
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	776
Eco47III	AGCGCT	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	342, 401
EcoT14I	CCWWGG	1 cut(s)	776
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	776
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	4 cut(s)	179, 370, 683, 774
FatI	CATG	4 cut(s)	175, 366, 679, 770
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	6 cut(s)	231, 334, 413, 617, 650, 657
FokI	GGATG	6 cut(s)	90, 213, 221, 359, 366, 490
Fsp4HI	GCNGC	6 cut(s)	231, 334, 413, 617, 650, 657
FspBI	CTAG	3 cut(s)	20, 389, 744
FspI	TGCGCA	1 cut(s)	482
GlaI	GCGC	3 cut(s)	24, 482, 489
GluI	GCNGC	6 cut(s)	231, 334, 413, 617, 650, 657
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	512
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	406, 659, 775
HapII	CCGG	2 cut(s)	91, 466
HhaI	GCGC	3 cut(s)	25, 483, 490
Hin1II	CATG	4 cut(s)	179, 370, 683, 774
Hin6I	GCGC	3 cut(s)	23, 481, 488
HinP1I	GCGC	3 cut(s)	23, 481, 488
HinfI	GANTC	4 cut(s)	66, 183, 459, 629
HpaII	CCGG	2 cut(s)	91, 466
HphI	GGTGA	3 cut(s)	137, 156, 766
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	5 cut(s)	65, 308, 600, 628, 670
Hpy188III	TCNNGA	4 cut(s)	75, 176, 239, 389
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	2 cut(s)	220, 422
HpyCH4V	TGCA	4 cut(s)	81, 333, 357, 640
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 31, 40, 339, 412, 487, 646
HpyF3I	CTNAG	4 cut(s)	275, 338, 437, 503
Hsp92II	CATG	4 cut(s)	179, 370, 683, 774
HspAI	GCGC	3 cut(s)	23, 481, 488
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	3 cut(s)	169, 595, 756
LmnI	GCTCC	3 cut(s)	493, 613, 676
Lsp1109I	GCAGC	4 cut(s)	217, 345, 424, 603
LweI	GCATC	3 cut(s)	68, 344, 468
MaeI	CTAG	3 cut(s)	20, 389, 744
MaeIII	GTNAC	2 cut(s)	382, 422
MalI	GATC	3 cut(s)	171, 597, 758
MboI	GATC	3 cut(s)	169, 595, 756
MboII	GAAGA	7 cut(s)	113, 153, 178, 605, 615, 654, 726
MlsI	TGGCCA	2 cut(s)	406, 775
MluCI	AATT	2 cut(s)	58, 119
MluNI	TGGCCA	2 cut(s)	406, 775
MlyI	GAGTC	3 cut(s)	60, 192, 468
MmeI	TCCRAC	2 cut(s)	88, 357
Mox20I	TGGCCA	2 cut(s)	406, 775
Mph1103I	ATGCAT	1 cut(s)	83
MscI	TGGCCA	2 cut(s)	406, 775
MslI	CAYNNNNRTG	1 cut(s)	769
Msp20I	TGGCCA	2 cut(s)	406, 775
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	91, 466
MspR9I	CCNGG	2 cut(s)	344, 403
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	344, 403
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	7 cut(s)	22, 31, 40, 339, 412, 487, 646
NdeII	GATC	3 cut(s)	169, 595, 756
NlaIII	CATG	4 cut(s)	179, 370, 683, 774
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	382, 422
NsbI	TGCGCA	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	2 cut(s)	370, 683
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	6 cut(s)	232, 335, 414, 618, 651, 658
PleI	GAGTC	3 cut(s)	60, 191, 467
PpsI	GAGTC	3 cut(s)	60, 191, 467
PscI	ACATGT	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	342, 401
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	342, 401
PspN4I	GGNNCC	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	769
SatI	GCNGC	6 cut(s)	231, 334, 413, 617, 650, 657
Sau3AI	GATC	3 cut(s)	169, 595, 756
SchI	GAGTC	3 cut(s)	60, 192, 468
ScrFI	CCNGG	2 cut(s)	344, 403
SetI	ASST	8 cut(s)	199, 232, 384, 396, 404, 417, 559, 618
SfaNI	GCATC	3 cut(s)	68, 344, 468
SmiMI	CAYNNNNRTG	1 cut(s)	769
Sse9I	AATT	2 cut(s)	58, 119
SsiI	CCGC	3 cut(s)	287, 650, 656
SspMI	CTAG	3 cut(s)	20, 389, 744
StyD4I	CCNGG	2 cut(s)	342, 401
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	2 cut(s)	220, 422
TasI	AATT	2 cut(s)	58, 119
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	2 cut(s)	652, 659
TfiI	GAWTC	1 cut(s)	629
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	2 cut(s)	382, 422
TseI	GCWGC	4 cut(s)	230, 333, 412, 616
Tsp45I	GTSAC	2 cut(s)	382, 422
TspDTI	ATGAA	5 cut(s)	486, 567, 617, 654, 753
TspRI	CASTG	1 cut(s)	651
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	197
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	370, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	3 cut(s)	20, 389, 744
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.