Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

38933641 .. 38935282

Gene Structure 1642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGTCAAACGCTTCTTCCTTTCTAGGCATATCAACAAACACCATTCGTGCACCAATCCATTATCCTGTACTTCAAAAACTTCTCTCTATCTTCTCTAATGGCTTCCACTACCAAAGAAACCGCCTCAGATTTTCTTCCTCTTATCACAGTCTTCAAAGATCACAGAGTCATGGGCTCACCATATGTGACCCCATCTCTTCAAAACCCAGAAACAAATTTCTTCTCCAAACTCATCACCAATGCAGTCGCAGTGAGACCATCGATTCCGTTCCCAAGGAGATAGACACAGAGCTTCTCCCATTTCTCAGAATCTACAAAGACGGCTCTGTTGAACGACTCATGGGCTCCCCATATGTACCCCCAACACTTGATGACCCAGATTCAGGAGTGTCATCAAAAGACATCACAATTTCACAAAATCCTTTGATTTCTGCCAGACTCTTCCTCCCAAAACTCAATGAGCCTCACAAGAAAATACCCACATTGGTTTACTACCACGGTGGAGCTTTCTGCGTCGAATCCGCCTTCTCTTTTGATCACCACAGGTTTCTCAACAGCTTGGTGTCCCAAGCCAAAGTTGTTGCTGTGTCAGTCGAGTACAGAATGGCTCCTGAGCACTCTCTCCCCATTGCATATGACGATAGCTGGGCTGCACTGAATTGGGTTGCCTTGCATTTTGCTGATAATGGCATCAATGAAGAGCCCTGGTTGATCAGTCACGGCGACCCGAATCGGTTATTTCTGGGTGGTGATAGTGCAGGAGCCAACATTGCTCATAACGTGGCAATGAGAGTTGGGAAAGAAGGATTGCCTAATGGTATAAACTTGTTGGGAGTCTTTCTTACACACCCTTTTTTTTGGGGCTCCAAGCCAATTGAGGGAGACGCTTGTGAAGAGCCTGAGAAGGATTTGGCTTGTTTGGTTTGGGACATGGCATACCCTTCAGCGCCTGGTGGGATTGATAATCCAGTGATCAATCCTGTTGCTCCAGAAGCACCAAGCTTGGCTGGACTTGGTTGTTCAAGGGTGCTTGTTAGTGTTTCTGAGAATGATGAGCTGAGGCATAGAGGTCTGGGTTACTATGAGGCAGTGAAAAGAAGTGGGTTTGAAGGTGAAGCAGAGTTGGTTGAAGTGGAAGGAGAGGATCATGCATTTCATATTTTGAAATTTGAGACTCGGAAAGCTAAGGAATTGACAAAAAAGTTGGCTGATTTCCTCCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

409

Amino Acids

45.37

Weight (kDa)

6.05

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	149 - 265	6.1e-08	Carboxylesterase family
BD-FAE	PF20434	155 - 269	2.2e-08	BD-FAE
Abhydrolase_3	PF07859	163 - 387	1.9e-46	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	124, 525
AclWI	GGATC	1 cut(s)	1155
AcsI	RAATTY	2 cut(s)	218, 1169
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	3 cut(s)	72, 360, 602
AfiI	CCNNNNNNNGG	2 cut(s)	386, 881
AgsI	TTSAA	8 cut(s)	77, 158, 204, 335, 1026, 1112, 1133, 1168
AjnI	CCWGG	2 cut(s)	707, 952
AluBI	AGCT	7 cut(s)	295, 509, 561, 648, 1005, 1060, 1187
AluI	AGCT	7 cut(s)	295, 509, 561, 648, 1005, 1060, 1187
Alw21I	GWGCWC	2 cut(s)	55, 621
Alw26I	GTCTC	3 cut(s)	251, 879, 1169
Alw44I	GTGCAC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	1155
AlwNI	CAGNNNCTG	1 cut(s)	953
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	218, 1169
AspLEI	GCGC	1 cut(s)	952
AsuHPI	GGTGA	5 cut(s)	172, 230, 533, 764, 1127
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	4 cut(s)	180, 350, 708, 869
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	55, 621
BbvCI	CCTCAGC	1 cut(s)	1061
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	203, 269
BceAI	ACGGC	2 cut(s)	340, 739
BciT130I	CCWGG	2 cut(s)	709, 954
BclI	TGATCA	3 cut(s)	538, 714, 975
BcoDI	GTCTC	3 cut(s)	251, 879, 1169
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	953
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	2 cut(s)	709, 954
BmiI	GGNNCC	4 cut(s)	349, 612, 766, 868
BmrFI	CCNGG	2 cut(s)	709, 954
BmsI	GCATC	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	3 cut(s)	615, 1061, 1188
BpuEI	CTTGAG	1 cut(s)	1208
Bsa29I	ATCGAT	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	276, 499, 707
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 881
Bse1I	ACTGG	1 cut(s)	971
Bse3DI	GCAATG	3 cut(s)	630, 771, 795
BseBI	CCWGG	2 cut(s)	709, 954
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	276, 499, 707
BseLI	CCNNNNNNNGG	2 cut(s)	386, 881
BseMI	GCAATG	3 cut(s)	630, 771, 795
BseMII	CTCAG	6 cut(s)	142, 322, 606, 894, 1038, 1052
BseNI	ACTGG	1 cut(s)	971
BseRI	GAGGAG	1 cut(s)	1211
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	640
BseYI	CCCAGC	1 cut(s)	648
BsgI	GTGCAG	2 cut(s)	639, 780
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	55, 621
BslFI	GGGAC	2 cut(s)	553, 944
BslI	CCNNNNNNNGG	2 cut(s)	386, 881
BsmAI	GTCTC	3 cut(s)	251, 879, 1169
BsmBI	CGTCTC	1 cut(s)	879
BsmFI	GGGAC	2 cut(s)	553, 944
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	6 cut(s)	55, 180, 350, 621, 708, 869
Bsp143I	GATC	5 cut(s)	161, 538, 714, 975, 1147
BspACI	CCGC	2 cut(s)	124, 525
BspCNI	CTCAG	6 cut(s)	141, 321, 607, 895, 1039, 1053
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	349, 612, 766, 868
BspPI	GGATC	1 cut(s)	1155
BspQI	GCTCTTC	2 cut(s)	696, 891
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	3 cut(s)	630, 771, 795
BsrI	ACTGG	1 cut(s)	971
BssECI	CCNNGG	3 cut(s)	276, 499, 707
BssMI	GATC	5 cut(s)	161, 538, 714, 975, 1147
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	709, 954
Bst4CI	ACNGT	2 cut(s)	152, 503
Bst6I	CTCTTC	4 cut(s)	205, 449, 696, 891
BstDEI	CTNAG	7 cut(s)	128, 308, 615, 903, 1047, 1061, 1188
BstDSI	CCRYGG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	5 cut(s)	164, 541, 717, 978, 1150
BstMAI	GTCTC	3 cut(s)	251, 879, 1169
BstMBI	GATC	5 cut(s)	161, 538, 714, 975, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 995
BstNI	CCWGG	2 cut(s)	709, 954
BstSCI	CCNGG	2 cut(s)	707, 952
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	259, 1098
BtsIMutI	CAGTG	4 cut(s)	259, 656, 978, 1098
CaiI	CAGNNNCTG	1 cut(s)	953
CfoI	GCGC	1 cut(s)	952
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	2 cut(s)	505, 896
Csp6I	GTAC	3 cut(s)	71, 359, 601
CviAII	CATG	4 cut(s)	173, 343, 934, 1151
CviQI	GTAC	3 cut(s)	71, 359, 601
DdeI	CTNAG	7 cut(s)	128, 308, 615, 903, 1047, 1061, 1188
DpnI	GATC	5 cut(s)	163, 540, 716, 977, 1149
DpnII	GATC	5 cut(s)	161, 538, 714, 975, 1147
Eam1104I	CTCTTC	4 cut(s)	205, 449, 696, 891
EarI	CTCTTC	4 cut(s)	205, 449, 696, 891
EciI	GGCGGA	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	4 cut(s)	180, 350, 708, 869
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	930
EcoRII	CCWGG	2 cut(s)	707, 952
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	1156
EcoT38I	GRGCYC	4 cut(s)	180, 350, 708, 869
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	879
FaeI	CATG	4 cut(s)	176, 346, 937, 1154
FaqI	GGGAC	2 cut(s)	553, 944
FatI	CATG	4 cut(s)	172, 342, 933, 1150
FauNDI	CATATG	3 cut(s)	185, 355, 637
FbaI	TGATCA	3 cut(s)	538, 714, 975
Fnu4HI	GCNGC	1 cut(s)	654
FriOI	GRGCYC	4 cut(s)	180, 350, 708, 869
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	1 cut(s)	654
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	1 cut(s)	975
HaeII	RGCGCY	1 cut(s)	953
HgaI	GACGC	2 cut(s)	505, 896
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	4 cut(s)	176, 346, 937, 1154
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HindIII	AAGCTT	1 cut(s)	1003
HphI	GGTGA	5 cut(s)	172, 230, 533, 764, 1127
Hpy166II	GTNNAC	2 cut(s)	53, 493
Hpy188I	TCNGA	4 cut(s)	131, 311, 1048, 1182
Hpy188III	TCNNGA	3 cut(s)	387, 614, 992
Hpy8I	GTNNAC	2 cut(s)	53, 493
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	6 cut(s)	538, 800, 901, 954, 1106, 1133
HpyCH4III	ACNGT	2 cut(s)	152, 503
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	7 cut(s)	53, 246, 635, 656, 676, 761, 1154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 995
HpyF3I	CTNAG	7 cut(s)	128, 308, 615, 903, 1047, 1061, 1188
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	176, 346, 937, 1154
HspAI	GCGC	1 cut(s)	950
Ksp22I	TGATCA	3 cut(s)	538, 714, 975
Kzo9I	GATC	5 cut(s)	161, 538, 714, 975, 1147
LguI	GCTCTTC	2 cut(s)	696, 891
LmnI	GCTCC	6 cut(s)	353, 506, 616, 764, 872, 994
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	3 cut(s)	188, 719, 1079
MalI	GATC	5 cut(s)	163, 540, 716, 977, 1149
MboI	GATC	5 cut(s)	161, 538, 714, 975, 1147
MboII	GAAGA	9 cut(s)	9, 85, 129, 146, 192, 215, 436, 713, 908
MfeI	CAATTG	1 cut(s)	876
MhlI	GDGCHC	6 cut(s)	55, 180, 350, 621, 708, 869
MluCI	AATT	6 cut(s)	218, 411, 661, 876, 1169, 1193
MlyI	GAGTC	5 cut(s)	178, 333, 435, 846, 1171
Mph1103I	ATGCAT	1 cut(s)	1156
MspR9I	CCNGG	2 cut(s)	709, 954
MunI	CAATTG	1 cut(s)	876
MvaI	CCWGG	2 cut(s)	709, 954
MwoI	GCNNNNNNNGC	2 cut(s)	773, 995
NdeI	CATATG	3 cut(s)	185, 355, 637
NdeII	GATC	5 cut(s)	161, 538, 714, 975, 1147
NlaIII	CATG	4 cut(s)	176, 346, 937, 1154
NlaIV	GGNNCC	4 cut(s)	349, 612, 766, 868
NmuCI	GTSAC	2 cut(s)	188, 719
NsiI	ATGCAT	1 cut(s)	1156
PciSI	GCTCTTC	2 cut(s)	696, 891
PfeI	GAWTC	5 cut(s)	266, 312, 383, 521, 733
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	5 cut(s)	177, 333, 435, 845, 1171
PpsI	GAGTC	5 cut(s)	177, 333, 435, 845, 1171
Psp6I	CCWGG	2 cut(s)	707, 952
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	2 cut(s)	707, 952
PspN4I	GGNNCC	4 cut(s)	349, 612, 766, 868
PstNI	CAGNNNCTG	1 cut(s)	953
RsaI	GTAC	3 cut(s)	72, 360, 602
RsaNI	GTAC	3 cut(s)	71, 359, 601
SapI	GCTCTTC	2 cut(s)	696, 891
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	5 cut(s)	161, 538, 714, 975, 1147
SchI	GAGTC	5 cut(s)	178, 333, 435, 846, 1171
ScrFI	CCNGG	2 cut(s)	709, 954
SduI	GDGCHC	6 cut(s)	55, 180, 350, 621, 708, 869
SfaNI	GCATC	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	1223
SmoI	CTYRAG	1 cut(s)	1223
Sse9I	AATT	6 cut(s)	218, 411, 661, 876, 1169, 1193
SsiI	CCGC	2 cut(s)	124, 525
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	707, 952
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	152, 503
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	3 cut(s)	264, 519, 597
TasI	AATT	6 cut(s)	218, 411, 661, 876, 1169, 1193
TatI	WGTACW	2 cut(s)	70, 600
TfiI	GAWTC	5 cut(s)	266, 312, 383, 521, 733
TscAI	CASTG	4 cut(s)	259, 663, 978, 1098
TseFI	GTSAC	2 cut(s)	188, 719
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	188, 719
TspDTI	ATGAA	2 cut(s)	714, 1148
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	4 cut(s)	259, 663, 978, 1098
VneI	GTGCAC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	218, 1169
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.