Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

27189692 .. 27193084

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G314600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCATCTGTGATAGCACGAACAGGGCGGCATCGGCAACGCTACGAGAACAATTTTCGCCTTGTTTCTGGGAGCCTGGAGGAGGAGAAGCATCTCCAGGTGGCAAGTTCTATGATATGTATTCCTTACCGGATGACAGAAGACGATGAAGATCACAACGGCGATATTGAAAACAGGATACAAGTTCTTATGGTTTCATCACCAGACCGTGATGACAGAGTGTTCCCAAAAGGCGGATGGGAGGATGATGAGACTGTCTTAGAAGCTGCTTGCCGTGAAGCCTTTGAGGAAGCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGCCAGAAAATAGAAAGCCTGGAAGGAGGCTGCAGAGGGTACATGTTTGCATTAGAGGTCACTGAAGAGCTTGAGAGCTGGCCAGAGCAGCAAAACCGTGATAGAAAATGGCTAAACATAAAGGAGGCATTTAGACTGTGCCGGTACGAATGGATGTGTAGAGCATTGGAGGAGTTTGTGAGAGTTATGGAAGTTTCTGATGATGATGAGGGTGGAAAAATTGAGATAGGAGGAGAAGAGAAAGGGGAGGCATCTGCCAATGTCAATGCCATGCCTAGTGTTCCTGCTGTGACAGATCATCATGTGGTGGCTGAATGTCAAATAGTGTCCTCAAACTGTTGCAAAGAGATAAAGCCGCCTTCTACTAGTCAACAACTGGTCATATCAGTTCATTGTCATGGCACCTGGCTCTCAAGGGGTTTGCCATTGAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

264

Amino Acids

29.88

Weight (kDa)

4.95

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AciI	CCGC	3 cut(s)	28, 234, 710
AcoI	YGGCCR	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	395, 500
AfiI	CCNNNNNNNGG	2 cut(s)	82, 233
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	170
AhlI	ACTAGT	1 cut(s)	719
AjnI	CCWGG	4 cut(s)	75, 96, 372, 758
AluBI	AGCT	3 cut(s)	266, 424, 432
AluI	AGCT	3 cut(s)	266, 424, 432
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	3 cut(s)	266, 384, 442
AsuHPI	GGTGA	2 cut(s)	192, 310
BalI	TGGCCA	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	253, 371, 454
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	2 cut(s)	175, 258
BciT130I	CCWGG	4 cut(s)	77, 98, 374, 760
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	245
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	2 cut(s)	630, 720
BfmI	CTRYAG	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	29, 267, 385, 443, 710
BlsI	GCNGC	5 cut(s)	30, 268, 386, 444, 711
Bme1390I	CCNGG	4 cut(s)	77, 98, 374, 760
BmiI	GGNNCC	2 cut(s)	74, 757
BmrFI	CCNGG	4 cut(s)	77, 98, 374, 760
BmsI	GCATC	3 cut(s)	40, 100, 614
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	80, 98
BpuEI	CTTGAG	2 cut(s)	446, 751
BsaBI	GATNNNNATC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 233
Bse118I	RCCGGY	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	4 cut(s)	77, 98, 374, 760
BseGI	GGATG	4 cut(s)	138, 242, 250, 513
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	82, 233
BseNI	ACTGG	1 cut(s)	735
BseRI	GAGGAG	5 cut(s)	95, 98, 312, 539, 600
BseXI	GCAGC	3 cut(s)	253, 371, 454
BshFI	GGCC	1 cut(s)	436
BshNI	GGYRCC	1 cut(s)	755
BsiSI	CCGG	2 cut(s)	130, 496
BslI	CCNNNNNNNGG	2 cut(s)	82, 233
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	151, 649
BspACI	CCGC	3 cut(s)	28, 234, 710
BspANI	GGCC	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	74, 757
BspMAI	CTGCAG	1 cut(s)	389
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	735
BssAI	RCCGGY	1 cut(s)	495
BssMI	GATC	2 cut(s)	151, 649
Bst2UI	CCWGG	4 cut(s)	77, 98, 374, 760
Bst4CI	ACNGT	5 cut(s)	209, 256, 452, 492, 692
Bst6I	CTCTTC	2 cut(s)	414, 585
BstC8I	GCNNGC	2 cut(s)	271, 434
BstDEI	CTNAG	2 cut(s)	259, 311
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	4 cut(s)	138, 242, 250, 513
BstKTI	GATC	2 cut(s)	154, 652
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	151, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 354, 442
BstNI	CCWGG	4 cut(s)	77, 98, 374, 760
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	75, 96, 372, 758
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	253, 371, 454
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	4 cut(s)	138, 242, 250, 513
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	271, 434
Cfr10I	RCCGGY	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	394, 499
CviAII	CATG	4 cut(s)	397, 625, 656, 752
CviQI	GTAC	2 cut(s)	394, 499
DdeI	CTNAG	2 cut(s)	259, 311
DpnI	GATC	2 cut(s)	153, 651
DpnII	GATC	2 cut(s)	151, 649
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	414, 585
EarI	CTCTTC	2 cut(s)	414, 585
EciI	GGCGGA	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	4 cut(s)	75, 96, 372, 758
FaeI	CATG	4 cut(s)	400, 628, 659, 755
FatI	CATG	4 cut(s)	396, 624, 655, 751
Fnu4HI	GCNGC	5 cut(s)	29, 267, 385, 443, 710
FokI	GGATG	4 cut(s)	145, 249, 257, 520
Fsp4HI	GCNGC	5 cut(s)	29, 267, 385, 443, 710
FspBI	CTAG	2 cut(s)	630, 720
GluI	GCNGC	5 cut(s)	29, 267, 385, 443, 710
GsuI	CTGGAG	2 cut(s)	80, 98
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	2 cut(s)	130, 496
Hin1II	CATG	4 cut(s)	400, 628, 659, 755
HincII	GTYRAC	1 cut(s)	725
HindII	GTYRAC	1 cut(s)	725
HinfI	GANTC	1 cut(s)	784
HpaII	CCGG	2 cut(s)	130, 496
HphI	GGTGA	2 cut(s)	192, 310
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	2 cut(s)	344, 553
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	371, 723
HpyCH4III	ACNGT	5 cut(s)	209, 256, 452, 492, 692
HpyCH4V	TGCA	3 cut(s)	387, 404, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 354, 442
HpyF3I	CTNAG	2 cut(s)	259, 311
Hsp92II	CATG	4 cut(s)	400, 628, 659, 755
Kzo9I	GATC	2 cut(s)	151, 649
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	3 cut(s)	253, 371, 454
LweI	GCATC	3 cut(s)	40, 100, 614
MaeI	CTAG	2 cut(s)	630, 720
MaeIII	GTNAC	2 cut(s)	412, 643
MalI	GATC	2 cut(s)	153, 651
MboI	GATC	2 cut(s)	151, 649
MboII	GAAGA	4 cut(s)	152, 161, 431, 602
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	2 cut(s)	52, 573
MluNI	TGGCCA	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	436
MspI	CCGG	2 cut(s)	130, 496
MspR9I	CCNGG	4 cut(s)	77, 98, 374, 760
MvaI	CCWGG	4 cut(s)	77, 98, 374, 760
MwoI	GCNNNNNNNGC	3 cut(s)	34, 354, 442
NdeII	GATC	2 cut(s)	151, 649
NlaIII	CATG	4 cut(s)	400, 628, 659, 755
NlaIV	GGNNCC	2 cut(s)	74, 757
NmuCI	GTSAC	2 cut(s)	412, 643
NspI	RCATGY	1 cut(s)	400
PciI	ACATGT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	30, 268, 386, 444, 711
PscI	ACATGT	1 cut(s)	396
Psp6I	CCWGG	4 cut(s)	75, 96, 372, 758
PspGI	CCWGG	4 cut(s)	75, 96, 372, 758
PspN4I	GGNNCC	2 cut(s)	74, 757
PstI	CTGCAG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	395, 500
RsaNI	GTAC	2 cut(s)	394, 499
RseI	CAYNNNNRTG	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	414
SatI	GCNGC	5 cut(s)	29, 267, 385, 443, 710
Sau3AI	GATC	2 cut(s)	151, 649
ScrFI	CCNGG	4 cut(s)	77, 98, 374, 760
SetI	ASST	6 cut(s)	102, 268, 414, 426, 434, 761
SfaNI	GCATC	3 cut(s)	40, 100, 614
SfcI	CTRYAG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	425, 766
SmoI	CTYRAG	2 cut(s)	425, 766
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	2 cut(s)	52, 573
SsiI	CCGC	3 cut(s)	28, 234, 710
SspMI	CTAG	2 cut(s)	630, 720
StyD4I	CCNGG	4 cut(s)	75, 96, 372, 758
TaaI	ACNGT	5 cut(s)	209, 256, 452, 492, 692
TasI	AATT	2 cut(s)	52, 573
TauI	GCSGC	2 cut(s)	31, 712
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	412, 643
TseI	GCWGC	3 cut(s)	266, 384, 442
Tsp45I	GTSAC	2 cut(s)	412, 643
TspDTI	ATGAA	3 cut(s)	162, 186, 734
TspRI	CASTG	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	80
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XspI	CTAG	2 cut(s)	630, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.