Nudix hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_tran | PF00005 | 177 - 358 | 1.3e-14 | ABC transporter |
| ABC2_membrane | PF01061 | 513 - 724 | 2.9e-44 | ABC-2 type transporter |
| PDR_assoc | PF08370 | 729 - 782 | 1.1e-18 | Plant PDR ABC transporter associated |
| ABC_tran | PF00005 | 820 - 971 | 1.5e-20 | ABC transporter |
| ABC2_membrane | PF01061 | 1116 - 1330 | 1.6e-58 | ABC-2 type transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AarI | CACCTGC | 1 cut(s) | 3643 |
| Acc16I | TGCGCA | 1 cut(s) | 3651 |
| Acc36I | ACCTGC | 1 cut(s) | 3643 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 593, 1333 |
| AccBSI | CCGCTC | 1 cut(s) | 3589 |
| AccI | GTMKAC | 4 cut(s) | 1239, 1401, 2403, 3600 |
| AciI | CCGC | 5 cut(s) | 132, 711, 2070, 3162, 3589 |
| AclI | AACGTT | 1 cut(s) | 152 |
| AclWI | GGATC | 7 cut(s) | 265, 934, 974, 1356, 1473, 1672, 3523 |
| AcoI | YGGCCR | 1 cut(s) | 1006 |
| AcuI | CTGAAG | 5 cut(s) | 1109, 1157, 3567, 3668, 3775 |
| AfaI | GTAC | 7 cut(s) | 1361, 1367, 1657, 3626, 3674, 3778, 4017 |
| AfeI | AGCGCT | 1 cut(s) | 3081 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 141, 593, 1307, 1330, 1333, 2912, 3168, 3296, 3366 |
| AgeI | ACCGGT | 1 cut(s) | 3185 |
| AhlI | ACTAGT | 2 cut(s) | 2803, 4117 |
| AjnI | CCWGG | 5 cut(s) | 586, 2485, 3127, 3408, 3901 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1026, 1058, 3192, 3224 |
| Alw21I | GWGCWC | 3 cut(s) | 74, 2332, 3457 |
| Alw26I | GTCTC | 4 cut(s) | 959, 1181, 1788, 2577 |
| AlwI | GGATC | 7 cut(s) | 265, 934, 974, 1356, 1473, 1672, 3523 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2030, 2419, 3861 |
| Ama87I | CYCGRG | 1 cut(s) | 1922 |
| Aor51HI | AGCGCT | 1 cut(s) | 3081 |
| AoxI | GGCC | 6 cut(s) | 129, 580, 885, 1006, 1247, 3636 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2949, 2981 |
| AsiGI | ACCGGT | 1 cut(s) | 3185 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 423, 1566, 2014, 4056 |
| AspA2I | CCTAGG | 1 cut(s) | 2314 |
| AspLEI | GCGC | 7 cut(s) | 162, 619, 1581, 1630, 2844, 3082, 3652 |
| AsuC2I | CCSGG | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 6 cut(s) | 817, 2314, 2990, 3175, 3667, 4018 |
| AvaI | CYCGRG | 1 cut(s) | 1922 |
| AvaII | GGWCC | 8 cut(s) | 36, 649, 1046, 2005, 3188, 3847, 3905, 3960 |
| AvrII | CCTAGG | 1 cut(s) | 2314 |
| BalI | TGGCCA | 1 cut(s) | 1008 |
| BanII | GRGCYC | 1 cut(s) | 2367 |
| BauI | CACGAG | 1 cut(s) | 3896 |
| BbsI | GAAGAC | 5 cut(s) | 111, 710, 1115, 1380, 3965 |
| Bbv12I | GWGCWC | 3 cut(s) | 74, 2332, 3457 |
| BbvI | GCAGC | 9 cut(s) | 108, 198, 788, 2036, 2920, 2942, 3418, 3519, 3802 |
| BceAI | ACGGC | 1 cut(s) | 2864 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2156, 2190 |
| BciT130I | CCWGG | 5 cut(s) | 588, 2487, 3129, 3410, 3903 |
| BclI | TGATCA | 2 cut(s) | 291, 3657 |
| BcnI | CCSGG | 1 cut(s) | 653 |
| BcoDI | GTCTC | 4 cut(s) | 959, 1181, 1788, 2577 |
| BcuI | ACTAGT | 2 cut(s) | 2803, 4117 |
| BfoI | RGCGCY | 2 cut(s) | 620, 3083 |
| BfuAI | ACCTGC | 1 cut(s) | 3643 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 588 |
| BglII | AGATCT | 2 cut(s) | 2744, 3994 |
| BlnI | CCTAGG | 1 cut(s) | 2314 |
| BmcAI | AGTACT | 1 cut(s) | 1361 |
| Bme1390I | CCNGG | 6 cut(s) | 588, 653, 2487, 3129, 3410, 3903 |
| Bme18I | GGWCC | 8 cut(s) | 36, 649, 1046, 2005, 3188, 3847, 3905, 3960 |
| BmeT110I | CYCGRG | 1 cut(s) | 1922 |
| BmiI | GGNNCC | 2 cut(s) | 1830, 3135 |
| BmrFI | CCNGG | 6 cut(s) | 588, 653, 2487, 3129, 3410, 3903 |
| BmrI | ACTGGG | 2 cut(s) | 3000, 3830 |
| BmsI | GCATC | 5 cut(s) | 555, 1486, 2006, 2911, 3443 |
| BmuI | ACTGGG | 2 cut(s) | 3000, 3830 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2241 |
| BpiI | GAAGAC | 5 cut(s) | 111, 710, 1115, 1380, 3965 |
| BpmI | CTGGAG | 3 cut(s) | 570, 2508, 3409 |
| BpuEI | CTTGAG | 2 cut(s) | 492, 629 |
| BpuMI | CCSGG | 1 cut(s) | 653 |
| Bsa29I | ATCGAT | 1 cut(s) | 1477 |
| BsaI | GGTCTC | 1 cut(s) | 1181 |
| BsaWI | WCCGGW | 1 cut(s) | 3185 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 141, 593, 1307, 1330, 1333, 2912, 3168, 3296, 3366 |
| Bse118I | RCCGGY | 2 cut(s) | 318, 3185 |
| Bse1I | ACTGG | 9 cut(s) | 771, 1367, 2476, 2569, 3006, 3392, 3737, 3836, 3855 |
| Bse3DI | GCAATG | 2 cut(s) | 1623, 1741 |
| BseBI | CCWGG | 5 cut(s) | 588, 2487, 3129, 3410, 3903 |
| BseCI | ATCGAT | 1 cut(s) | 1477 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 141, 593, 1307, 1330, 1333, 2912, 3168, 3296, 3366 |
| BseMI | GCAATG | 2 cut(s) | 1623, 1741 |
| BseNI | ACTGG | 9 cut(s) | 771, 1367, 2476, 2569, 3006, 3392, 3737, 3836, 3855 |
| BseRI | GAGGAG | 2 cut(s) | 3550, 3619 |
| BseXI | GCAGC | 9 cut(s) | 108, 198, 788, 2036, 2920, 2942, 3418, 3519, 3802 |
| BseYI | CCCAGC | 2 cut(s) | 3082, 3252 |
| BshFI | GGCC | 6 cut(s) | 131, 582, 887, 1008, 1249, 3638 |
| BshTI | ACCGGT | 1 cut(s) | 3185 |
| BshVI | ATCGAT | 1 cut(s) | 1477 |
| BsiHKAI | GWGCWC | 3 cut(s) | 74, 2332, 3457 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1922 |
| BsiSI | CCGG | 3 cut(s) | 319, 652, 3186 |
| BslFI | GGGAC | 2 cut(s) | 372, 839 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 141, 593, 1307, 1330, 1333, 2912, 3168, 3296, 3366 |
| BsmAI | GTCTC | 4 cut(s) | 959, 1181, 1788, 2577 |
| BsmFI | GGGAC | 2 cut(s) | 372, 839 |
| BsmI | GAATGC | 1 cut(s) | 3026 |
| BsnI | GGCC | 6 cut(s) | 131, 582, 887, 1008, 1249, 3638 |
| Bso31I | GGTCTC | 1 cut(s) | 1181 |
| BsoBI | CYCGRG | 1 cut(s) | 1922 |
| Bsp1286I | GDGCHC | 4 cut(s) | 74, 2332, 2367, 3457 |
| Bsp1407I | TGTACA | 1 cut(s) | 3776 |
| Bsp19I | CCATGG | 2 cut(s) | 1243, 1384 |
| BspACI | CCGC | 5 cut(s) | 132, 711, 2070, 3162, 3589 |
| BspANI | GGCC | 6 cut(s) | 131, 582, 887, 1008, 1249, 3638 |
| BspDI | ATCGAT | 1 cut(s) | 1477 |
| BspHI | TCATGA | 1 cut(s) | 918 |
| BspLI | GGNNCC | 2 cut(s) | 1830, 3135 |
| BspMAI | CTGCAG | 5 cut(s) | 16, 79, 126, 1747, 3199 |
| BspMI | ACCTGC | 1 cut(s) | 3643 |
| BspPI | GGATC | 7 cut(s) | 265, 934, 974, 1356, 1473, 1672, 3523 |
| BspTNI | GGTCTC | 1 cut(s) | 1181 |
| BsrBI | CCGCTC | 1 cut(s) | 3589 |
| BsrDI | GCAATG | 2 cut(s) | 1623, 1741 |
| BsrFI | RCCGGY | 2 cut(s) | 318, 3185 |
| BsrGI | TGTACA | 1 cut(s) | 3776 |
| BsrI | ACTGG | 9 cut(s) | 771, 1367, 2476, 2569, 3006, 3392, 3737, 3836, 3855 |
| BssAI | RCCGGY | 2 cut(s) | 318, 3185 |
| BssNAI | GTATAC | 2 cut(s) | 1240, 3601 |
| BssSI | CACGAG | 1 cut(s) | 3896 |
| BssT1I | CCWWGG | 6 cut(s) | 943, 1243, 1384, 2001, 2180, 2314 |
| Bst1107I | GTATAC | 2 cut(s) | 1240, 3601 |
| Bst2BI | CACGAG | 1 cut(s) | 3896 |
| Bst2UI | CCWGG | 5 cut(s) | 588, 2487, 3129, 3410, 3903 |
| Bst6I | CTCTTC | 2 cut(s) | 1544, 2679 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1553 |
| BstAUI | TGTACA | 1 cut(s) | 3776 |
| BstDSI | CCRYGG | 3 cut(s) | 1243, 1384, 2239 |
| BstEII | GGTNACC | 1 cut(s) | 3181 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1328 |
| BstH2I | RGCGCY | 2 cut(s) | 620, 3083 |
| BstHHI | GCGC | 7 cut(s) | 162, 619, 1581, 1630, 2844, 3082, 3652 |
| BstMAI | GTCTC | 4 cut(s) | 959, 1181, 1788, 2577 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 588, 1553, 2848, 2930, 3299, 3472 |
| BstNI | CCWGG | 5 cut(s) | 588, 2487, 3129, 3410, 3903 |
| BstNSI | RCATGY | 3 cut(s) | 56, 275, 1551 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2241 |
| BstPI | GGTNACC | 1 cut(s) | 3181 |
| BstSCI | CCNGG | 6 cut(s) | 586, 651, 2485, 3127, 3408, 3901 |
| BstV1I | GCAGC | 9 cut(s) | 108, 198, 788, 2036, 2920, 2942, 3418, 3519, 3802 |
| BstV2I | GAAGAC | 5 cut(s) | 111, 710, 1115, 1380, 3965 |
| BstX2I | RGATCY | 5 cut(s) | 939, 979, 1677, 2744, 3994 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 450, 1159, 1385 |
| BstYI | RGATCY | 5 cut(s) | 939, 979, 1677, 2744, 3994 |
| BstZ17I | GTATAC | 2 cut(s) | 1240, 3601 |
| Bsu15I | ATCGAT | 1 cut(s) | 1477 |
| BsuRI | GGCC | 6 cut(s) | 131, 582, 887, 1008, 1249, 3638 |
| BsuTUI | ATCGAT | 1 cut(s) | 1477 |
| BtgI | CCRYGG | 3 cut(s) | 1243, 1384, 2239 |
| BtsI | GCAGTG | 6 cut(s) | 72, 131, 1740, 1782, 2868, 3779 |
| BveI | ACCTGC | 1 cut(s) | 3643 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2030, 2419, 3861 |
| CciI | TCATGA | 1 cut(s) | 918 |
| CfoI | GCGC | 7 cut(s) | 162, 619, 1581, 1630, 2844, 3082, 3652 |
| Cfr10I | RCCGGY | 2 cut(s) | 318, 3185 |
| ClaI | ATCGAT | 1 cut(s) | 1477 |
| CseI | GACGC | 1 cut(s) | 1877 |
| Csp6I | GTAC | 7 cut(s) | 1360, 1366, 1656, 3625, 3673, 3777, 4016 |
| CspAI | ACCGGT | 1 cut(s) | 3185 |
| CviQI | GTAC | 7 cut(s) | 1360, 1366, 1656, 3625, 3673, 3777, 4016 |
| DraI | TTTAAA | 2 cut(s) | 2343, 3355 |
| EaeI | YGGCCR | 1 cut(s) | 1006 |
| Eam1104I | CTCTTC | 2 cut(s) | 1544, 2679 |
| EarI | CTCTTC | 2 cut(s) | 1544, 2679 |
| Eco130I | CCWWGG | 6 cut(s) | 943, 1243, 1384, 2001, 2180, 2314 |
| Eco24I | GRGCYC | 1 cut(s) | 2367 |
| Eco31I | GGTCTC | 1 cut(s) | 1181 |
| Eco32I | GATATC | 3 cut(s) | 538, 1077, 2274 |
| Eco47I | GGWCC | 8 cut(s) | 36, 649, 1046, 2005, 3188, 3847, 3905, 3960 |
| Eco47III | AGCGCT | 1 cut(s) | 3081 |
| Eco57I | CTGAAG | 5 cut(s) | 1109, 1157, 3567, 3668, 3775 |
| Eco88I | CYCGRG | 1 cut(s) | 1922 |
| Eco91I | GGTNACC | 1 cut(s) | 3181 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1328 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoO65I | GGTNACC | 1 cut(s) | 3181 |
| EcoRI | GAATTC | 1 cut(s) | 2168 |
| EcoRII | CCWGG | 5 cut(s) | 586, 2485, 3127, 3408, 3901 |
| EcoRV | GATATC | 3 cut(s) | 538, 1077, 2274 |
| EcoT14I | CCWWGG | 6 cut(s) | 943, 1243, 1384, 2001, 2180, 2314 |
| EcoT22I | ATGCAT | 1 cut(s) | 58 |
| EcoT38I | GRGCYC | 1 cut(s) | 2367 |
| ErhI | CCWWGG | 6 cut(s) | 943, 1243, 1384, 2001, 2180, 2314 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 1536, 1568, 2336, 2368, 3192, 3224, 4145 |
| FaqI | GGGAC | 2 cut(s) | 372, 839 |
| FauI | CCCGC | 1 cut(s) | 3169 |
| FauNDI | CATATG | 1 cut(s) | 2623 |
| FbaI | TGATCA | 2 cut(s) | 291, 3657 |
| FblI | GTMKAC | 4 cut(s) | 1239, 1401, 2403, 3600 |
| FriOI | GRGCYC | 1 cut(s) | 2367 |
| FspI | TGCGCA | 1 cut(s) | 3651 |
| GlaI | GCGC | 7 cut(s) | 161, 618, 1580, 1629, 2843, 3081, 3651 |
| GsaI | CCCAGC | 2 cut(s) | 3086, 3256 |
| GsuI | CTGGAG | 3 cut(s) | 570, 2508, 3409 |
| HaeII | RGCGCY | 2 cut(s) | 620, 3083 |
| HaeIII | GGCC | 6 cut(s) | 131, 582, 887, 1008, 1249, 3638 |
| HapII | CCGG | 3 cut(s) | 319, 652, 3186 |
| HgaI | GACGC | 1 cut(s) | 1877 |
| HhaI | GCGC | 7 cut(s) | 162, 619, 1581, 1630, 2844, 3082, 3652 |
| Hin6I | GCGC | 7 cut(s) | 160, 617, 1579, 1628, 2842, 3080, 3650 |
| HinP1I | GCGC | 7 cut(s) | 160, 617, 1579, 1628, 2842, 3080, 3650 |
| HincII | GTYRAC | 2 cut(s) | 1402, 2404 |
| HindII | GTYRAC | 2 cut(s) | 1402, 2404 |
| HindIII | AAGCTT | 2 cut(s) | 466, 3101 |
| HinfI | GANTC | 7 cut(s) | 484, 568, 860, 1148, 1849, 2687, 3239 |
| HpaII | CCGG | 3 cut(s) | 319, 652, 3186 |
| HphI | GGTGA | 6 cut(s) | 817, 2314, 2990, 3175, 3667, 4018 |
| Hpy166II | GTNNAC | 5 cut(s) | 1240, 1402, 2404, 3601, 3779 |
| Hpy8I | GTNNAC | 5 cut(s) | 1240, 1402, 2404, 3601, 3779 |
| HpyCH4IV | ACGT | 2 cut(s) | 152, 2713 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 588, 1553, 2848, 2930, 3299, 3472 |
| HpySE526I | ACGT | 2 cut(s) | 152, 2713 |
| HspAI | GCGC | 7 cut(s) | 160, 617, 1579, 1628, 2842, 3080, 3650 |
| Ksp22I | TGATCA | 2 cut(s) | 291, 3657 |
| LmnI | GCTCC | 9 cut(s) | 69, 2182, 2282, 2519, 2866, 3077, 3346, 3452, 3563 |
| Lsp1109I | GCAGC | 9 cut(s) | 108, 198, 788, 2036, 2920, 2942, 3418, 3519, 3802 |
| LweI | GCATC | 5 cut(s) | 555, 1486, 2006, 2911, 3443 |
| MaeII | ACGT | 2 cut(s) | 152, 2713 |
| MbiI | CCGCTC | 1 cut(s) | 3589 |
| MfeI | CAATTG | 2 cut(s) | 969, 1130 |
| MflI | RGATCY | 5 cut(s) | 939, 979, 1677, 2744, 3994 |
| MhlI | GDGCHC | 4 cut(s) | 74, 2332, 2367, 3457 |
| MlsI | TGGCCA | 1 cut(s) | 1008 |
| MluNI | TGGCCA | 1 cut(s) | 1008 |
| MlyI | GAGTC | 3 cut(s) | 478, 562, 2696 |
| MmeI | TCCRAC | 1 cut(s) | 1417 |
| Mox20I | TGGCCA | 1 cut(s) | 1008 |
| Mph1103I | ATGCAT | 1 cut(s) | 58 |
| MroXI | GAANNNNTTC | 4 cut(s) | 423, 1566, 2014, 4056 |
| MscI | TGGCCA | 1 cut(s) | 1008 |
| MseI | TTAA | 7 cut(s) | 462, 633, 2048, 2342, 3044, 3354, 3965 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1389, 1494, 3247 |
| Msp20I | TGGCCA | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 1 cut(s) | 2933 |
| MspI | CCGG | 3 cut(s) | 319, 652, 3186 |
| MspR9I | CCNGG | 6 cut(s) | 588, 653, 2487, 3129, 3410, 3903 |
| MunI | CAATTG | 2 cut(s) | 969, 1130 |
| Mva1269I | GAATGC | 1 cut(s) | 3026 |
| MvaI | CCWGG | 5 cut(s) | 588, 2487, 3129, 3410, 3903 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 588, 1553, 2848, 2930, 3299, 3472 |
| NciI | CCSGG | 1 cut(s) | 653 |
| NcoI | CCATGG | 2 cut(s) | 1243, 1384 |
| NdeI | CATATG | 1 cut(s) | 2623 |
| NlaIV | GGNNCC | 2 cut(s) | 1830, 3135 |
| NmuCI | GTSAC | 5 cut(s) | 823, 1114, 2654, 3181, 4040 |
| NsbI | TGCGCA | 1 cut(s) | 3651 |
| NsiI | ATGCAT | 1 cut(s) | 58 |
| NspI | RCATGY | 3 cut(s) | 56, 275, 1551 |
| PaeI | GCATGC | 2 cut(s) | 56, 1551 |
| PagI | TCATGA | 1 cut(s) | 918 |
| PaqCI | CACCTGC | 1 cut(s) | 3643 |
| PctI | GAATGC | 1 cut(s) | 3026 |
| PdmI | GAANNNNTTC | 4 cut(s) | 423, 1566, 2014, 4056 |
| PfeI | GAWTC | 4 cut(s) | 860, 1148, 1849, 3239 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 593, 1333 |
| PinAI | ACCGGT | 1 cut(s) | 3185 |
| PleI | GAGTC | 3 cut(s) | 478, 562, 2695 |
| PpsI | GAGTC | 3 cut(s) | 478, 562, 2695 |
| PpuMI | RGGWCCY | 1 cut(s) | 36 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2241 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp1406I | AACGTT | 1 cut(s) | 152 |
| Psp5II | RGGWCCY | 1 cut(s) | 36 |
| Psp6I | CCWGG | 5 cut(s) | 586, 2485, 3127, 3408, 3901 |
| PspEI | GGTNACC | 1 cut(s) | 3181 |
| PspFI | CCCAGC | 2 cut(s) | 3082, 3252 |
| PspGI | CCWGG | 5 cut(s) | 586, 2485, 3127, 3408, 3901 |
| PspN4I | GGNNCC | 2 cut(s) | 1830, 3135 |
| PspPPI | RGGWCCY | 1 cut(s) | 36 |
| PstI | CTGCAG | 5 cut(s) | 16, 79, 126, 1747, 3199 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2030, 2419, 3861 |
| PsuI | RGATCY | 5 cut(s) | 939, 979, 1677, 2744, 3994 |
| PvuII | CAGCTG | 1 cut(s) | 2933 |
| RsaI | GTAC | 7 cut(s) | 1361, 1367, 1657, 3626, 3674, 3778, 4017 |
| RsaNI | GTAC | 7 cut(s) | 1360, 1366, 1656, 3625, 3673, 3777, 4016 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1389, 1494, 3247 |
| SalI | GTCGAC | 2 cut(s) | 1400, 2402 |
| SaqAI | TTAA | 7 cut(s) | 462, 633, 2048, 2342, 3044, 3354, 3965 |
| ScaI | AGTACT | 1 cut(s) | 1361 |
| SchI | GAGTC | 3 cut(s) | 478, 562, 2696 |
| ScrFI | CCNGG | 6 cut(s) | 588, 653, 2487, 3129, 3410, 3903 |
| SduI | GDGCHC | 4 cut(s) | 74, 2332, 2367, 3457 |
| SfaNI | GCATC | 5 cut(s) | 555, 1486, 2006, 2911, 3443 |
| SinI | GGWCC | 8 cut(s) | 36, 649, 1046, 2005, 3188, 3847, 3905, 3960 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1389, 1494, 3247 |
| SmlI | CTYRAG | 2 cut(s) | 507, 644 |
| SmoI | CTYRAG | 2 cut(s) | 507, 644 |
| SpeI | ACTAGT | 2 cut(s) | 2803, 4117 |
| SphI | GCATGC | 2 cut(s) | 56, 1551 |
| SsiI | CCGC | 5 cut(s) | 132, 711, 2070, 3162, 3589 |
| SspI | AATATT | 1 cut(s) | 2396 |
| StyD4I | CCNGG | 6 cut(s) | 586, 651, 2485, 3127, 3408, 3901 |
| StyI | CCWWGG | 6 cut(s) | 943, 1243, 1384, 2001, 2180, 2314 |
| TaiI | ACGT | 2 cut(s) | 155, 2716 |
| TaqI | TCGA | 8 cut(s) | 248, 385, 1401, 1477, 2403, 2778, 2831, 3030 |
| TaqII | GACCGA | 1 cut(s) | 3922 |
| TatI | WGTACW | 4 cut(s) | 1359, 3624, 3776, 4015 |
| TauI | GCSGC | 2 cut(s) | 134, 2073 |
| TfiI | GAWTC | 4 cut(s) | 860, 1148, 1849, 3239 |
| Tru1I | TTAA | 7 cut(s) | 462, 633, 2048, 2342, 3044, 3354, 3965 |
| Tru9I | TTAA | 7 cut(s) | 462, 633, 2048, 2342, 3044, 3354, 3965 |
| TseFI | GTSAC | 5 cut(s) | 823, 1114, 2654, 3181, 4040 |
| Tsp45I | GTSAC | 5 cut(s) | 823, 1114, 2654, 3181, 4040 |
| TspGWI | ACGGA | 3 cut(s) | 1280, 1976, 3660 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 593, 1333 |
| VpaK11BI | GGWCC | 8 cut(s) | 36, 649, 1046, 2005, 3188, 3847, 3905, 3960 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1328 |
| XceI | RCATGY | 3 cut(s) | 56, 275, 1551 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2893 |
| XmaJI | CCTAGG | 1 cut(s) | 2314 |
| XmiI | GTMKAC | 4 cut(s) | 1239, 1401, 2403, 3600 |
| XmnI | GAANNNNTTC | 4 cut(s) | 423, 1566, 2014, 4056 |
| ZrmI | AGTACT | 1 cut(s) | 1361 |
| Zsp2I | ATGCAT | 1 cut(s) | 58 |