Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002072.1

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

40389 .. 47287

Gene Structure 6899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002072.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggtgctccagaacgatattgatttgcttcacccaccagctgacctcgagaagaggaagcacaagctcaagaggctcgtgcagacccctaattcattcttcatggacgtcaaatgccagggatgcttcaacataaccactgtgttcagccactcgcaaacagttgtggtgtgcggaaactgccagacagttttgtgccagccaactggtgggcgtgccaggctcactgagggattatcaaaaatcatgtcttgtttgacagccagaacagggcggcagagacagcggtacgaggatcaattgaggcttgtttcaggatgtataccttataagtttgaagagacggtagggagtagcaattgcaatgtagagaaaaagttgcttgttctcatgatttcttcaccagatcgagatgatcttgtctttccaaagggaggatgggagaatgacgaaaccatgcatgaagctgcttgtcgcgaggccttagaagaagcaggagtgaagggagttcttggtgaaactccactaggacaatgggagttcagaagcaagagcaaacagaacaatggcagcctgcaaggtggttgtagaggttacatgtttgcactaagggttactgaagagctcgactcctggcccgagcaggccatctacggaaggaaatgggttaccgtagaagacgcattcaaattctgtcggtatgactggatgcgagaagctcttagaaagcttttgatagcactctcagataacacggaaaatggcccgagagaagaactggatggatttcctttgaggccagttatctcagaagtcggatcagagcatcaaatatcatcaccatccggttgctttgctagtcattctagtgttcagcagctcgcagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

296

Amino Acids

33.24

Weight (kDa)

6.34

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AatII	GACGTC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	477
AciI	CCGC	3 cut(s)	174, 274, 286
AclWI	GGATC	2 cut(s)	303, 826
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	209, 270, 434
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	3 cut(s)	130, 338, 688
AjnI	CCWGG	3 cut(s)	117, 218, 632
AluBI	AGCT	8 cut(s)	41, 67, 467, 625, 719, 730, 880, 887
AluI	AGCT	8 cut(s)	41, 67, 467, 625, 719, 730, 880, 887
Alw21I	GWGCWC	2 cut(s)	9, 627
Alw26I	GTCTC	2 cut(s)	274, 335
AlwI	GGATC	2 cut(s)	303, 826
Ama87I	CYCGRG	3 cut(s)	47, 638, 766
AoxI	GGCC	5 cut(s)	480, 635, 645, 763, 797
ApeKI	GCWGC	4 cut(s)	467, 570, 877, 884
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	2 cut(s)	636, 764
AsuHPI	GGTGA	4 cut(s)	23, 393, 527, 831
AvaI	CYCGRG	3 cut(s)	47, 638, 766
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	9, 627
BbvI	GCAGC	2 cut(s)	454, 582
BccI	CCATC	4 cut(s)	432, 656, 776, 850
BciT130I	CCWGG	3 cut(s)	119, 220, 634
BcoDI	GTCTC	2 cut(s)	274, 335
BfaI	CTAG	3 cut(s)	527, 858, 867
BisI	GCNGC	5 cut(s)	275, 468, 571, 878, 885
BlsI	GCNGC	5 cut(s)	276, 469, 572, 879, 886
Bme1390I	CCNGG	3 cut(s)	119, 220, 634
BmeT110I	CYCGRG	3 cut(s)	47, 638, 766
BmgT120I	GGNCC	2 cut(s)	636, 764
BmrFI	CCNGG	3 cut(s)	119, 220, 634
BmsI	GCATC	3 cut(s)	113, 699, 835
BpiI	GAAGAC	1 cut(s)	684
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 270, 434
Bse1I	ACTGG	4 cut(s)	211, 710, 783, 800
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	119, 220, 634
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	6 cut(s)	128, 323, 443, 714, 787, 842
BseLI	CCNNNNNNNGG	3 cut(s)	209, 270, 434
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	3 cut(s)	219, 759, 822
BseNI	ACTGG	4 cut(s)	211, 710, 783, 800
BseXI	GCAGC	2 cut(s)	454, 582
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	5 cut(s)	482, 637, 647, 765, 799
BsiHKAI	GWGCWC	2 cut(s)	9, 627
BsiHKCI	CYCGRG	3 cut(s)	47, 638, 766
BsiSI	CCGG	1 cut(s)	846
BslI	CCNNNNNNNGG	3 cut(s)	209, 270, 434
BsmAI	GTCTC	2 cut(s)	274, 335
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	5 cut(s)	482, 637, 647, 765, 799
BsoBI	CYCGRG	3 cut(s)	47, 638, 766
Bsp1286I	GDGCHC	2 cut(s)	9, 627
Bsp143I	GATC	4 cut(s)	295, 406, 415, 818
Bsp68I	TCGCGA	1 cut(s)	477
BspACI	CCGC	3 cut(s)	174, 274, 286
BspANI	GGCC	5 cut(s)	482, 637, 647, 765, 799
BspCNI	CTCAG	3 cut(s)	220, 758, 821
BspFNI	CGCG	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	390
BspPI	GGATC	2 cut(s)	303, 826
BspQI	GCTCTTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	4 cut(s)	211, 710, 783, 800
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	295, 406, 415, 818
BssNAI	GTATAC	1 cut(s)	323
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	3 cut(s)	119, 220, 634
Bst4CI	ACNGT	5 cut(s)	142, 163, 190, 346, 673
Bst6I	CTCTTC	3 cut(s)	47, 333, 615
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	5 cut(s)	200, 216, 575, 645, 882
BstDEI	CTNAG	6 cut(s)	228, 484, 608, 722, 745, 808
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	6 cut(s)	128, 323, 443, 714, 787, 842
BstFNI	CGCG	1 cut(s)	477
BstKTI	GATC	4 cut(s)	298, 409, 418, 821
BstMAI	GTCTC	2 cut(s)	274, 335
BstMBI	GATC	4 cut(s)	295, 406, 415, 818
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 123, 180, 220, 283
BstNI	CCWGG	3 cut(s)	119, 220, 634
BstNSI	RCATGY	1 cut(s)	601
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	117, 218, 632
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	454, 582
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	323
BsuRI	GGCC	5 cut(s)	482, 637, 647, 765, 799
BtsCI	GGATG	6 cut(s)	128, 323, 443, 714, 787, 842
BtsIMutI	CAGTG	2 cut(s)	138, 225
BtuMI	TCGCGA	1 cut(s)	477
Cac8I	GCNNGC	5 cut(s)	200, 216, 575, 645, 882
CciI	TCATGA	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	636, 764
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	6 cut(s)	103, 247, 391, 457, 461, 598
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	6 cut(s)	228, 484, 608, 722, 745, 808
DpnI	GATC	4 cut(s)	297, 408, 417, 820
DpnII	GATC	4 cut(s)	295, 406, 415, 818
Eam1104I	CTCTTC	3 cut(s)	47, 333, 615
EarI	CTCTTC	3 cut(s)	47, 333, 615
Ecl136II	GAGCTC	1 cut(s)	625
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	3 cut(s)	47, 638, 766
Eco91I	GGTNACC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	667
EcoRII	CCWGG	3 cut(s)	117, 218, 632
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	6 cut(s)	106, 250, 394, 460, 464, 601
FatI	CATG	6 cut(s)	102, 246, 390, 456, 460, 597
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	275, 468, 571, 878, 885
FokI	GGATG	6 cut(s)	135, 330, 450, 721, 794, 829
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	5 cut(s)	275, 468, 571, 878, 885
FspBI	CTAG	3 cut(s)	527, 858, 867
GluI	GCNGC	5 cut(s)	275, 468, 571, 878, 885
HaeIII	GGCC	5 cut(s)	482, 637, 647, 765, 799
HapII	CCGG	1 cut(s)	846
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	6 cut(s)	106, 250, 394, 460, 464, 601
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	4 cut(s)	23, 393, 527, 831
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	5 cut(s)	545, 748, 811, 818, 823
Hpy188III	TCNNGA	7 cut(s)	10, 49, 70, 315, 391, 410, 476
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	496, 651
HpyCH4III	ACNGT	5 cut(s)	142, 163, 190, 346, 673
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	5 cut(s)	82, 363, 460, 577, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 123, 180, 220, 283
HpyF3I	CTNAG	6 cut(s)	228, 484, 608, 722, 745, 808
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	106, 250, 394, 460, 464, 601
Kzo9I	GATC	4 cut(s)	295, 406, 415, 818
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	2 cut(s)	454, 582
LweI	GCATC	3 cut(s)	113, 699, 835
MaeI	CTAG	3 cut(s)	527, 858, 867
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	593, 613, 667
MalI	GATC	4 cut(s)	297, 408, 417, 820
MboI	GATC	4 cut(s)	295, 406, 415, 818
MboII	GAAGA	8 cut(s)	64, 91, 350, 390, 500, 632, 689, 785
MfeI	CAATTG	2 cut(s)	299, 358
MhlI	GDGCHC	2 cut(s)	9, 627
MluCI	AATT	4 cut(s)	91, 299, 358, 689
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	796
Mph1103I	ATGCAT	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	867
MspA1I	CMGCKG	2 cut(s)	41, 286
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	3 cut(s)	119, 220, 634
MunI	CAATTG	2 cut(s)	299, 358
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	3 cut(s)	119, 220, 634
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	5 cut(s)	73, 123, 180, 220, 283
NdeII	GATC	4 cut(s)	295, 406, 415, 818
NlaIII	CATG	6 cut(s)	106, 250, 394, 460, 464, 601
NruI	TCGCGA	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	482
PciI	ACATGT	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	615
PctI	GAATGC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	276, 469, 572, 879, 886
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PscI	ACATGT	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	117, 218, 632
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	3 cut(s)	117, 218, 632
PspPI	GGNCC	2 cut(s)	636, 764
PvuII	CAGCTG	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	477
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	867
SacI	GAGCTC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	615
SatI	GCNGC	5 cut(s)	275, 468, 571, 878, 885
Sau3AI	GATC	4 cut(s)	295, 406, 415, 818
Sau96I	GGNCC	2 cut(s)	636, 764
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	3 cut(s)	119, 220, 634
SduI	GDGCHC	2 cut(s)	9, 627
SfaNI	GCATC	3 cut(s)	113, 699, 835
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
Sse9I	AATT	4 cut(s)	91, 299, 358, 689
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	3 cut(s)	174, 274, 286
SspMI	CTAG	3 cut(s)	527, 858, 867
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	117, 218, 632
TaaI	ACNGT	5 cut(s)	142, 163, 190, 346, 673
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	48, 409, 627
TasI	AATT	4 cut(s)	91, 299, 358, 689
TauI	GCSGC	1 cut(s)	277
TscAI	CASTG	2 cut(s)	145, 232
TseI	GCWGC	4 cut(s)	467, 570, 877, 884
TspDTI	ATGAA	3 cut(s)	84, 91, 477
TspGWI	ACGGA	2 cut(s)	669, 770
TspRI	CASTG	2 cut(s)	145, 232
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	3 cut(s)	206, 435, 531
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	3 cut(s)	527, 858, 867
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.