Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

100062 .. 100692

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGCAACCTCAGCCTGGAAGGTGGATGCAGAGGATATATGTTTGCATTAGAGGTCACCCAAGAGCTTGATACCTGGCCAGAGCACCAAAACCGTGACAGGAAATGGCTAAGCATAAAGGAGGCATTTAGGGTGTGCCGGTATGAATGGATGCGCAAAGCGTTGGAGCAGTTTCTGAGAGTCATGGGAGGAGGACTAGTACTTTCAGTTTGTGATGATAATGATAATATTGATGATGAGGATGGAAAAGTGAAAGTTGTGGAGATGATGATGGGATCAGAAGATGAGATGAAATTAGGAGGAGAGCTGCCACCTCCGGATTCTACCCTGCAGCCGCCGTTGTCAGATGTGGAACATGTGATGGCTGAATGTAAAATAGTGTCGTCAAACTGCTACATAAAGCCAGCTTCTTCTTCTTCTTCAAGTGCTAGTGCTAGTCAACTGGTGATATCAGTTGATTGTCATGGCACTTGGCTCTCAAGGACAAGGTGGGGTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

4.89

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	77
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	423
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	15, 74
AluBI	AGCT	3 cut(s)	67, 307, 407
AluI	AGCT	3 cut(s)	67, 307, 407
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	307, 331
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	49, 457
BalI	TGGCCA	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	294, 343
BccI	CCATC	3 cut(s)	236, 265, 355
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	17, 76
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	3 cut(s)	197, 429, 435
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	308, 332, 335
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	3 cut(s)	309, 333, 336
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	17, 76
BmrFI	CCNGG	2 cut(s)	17, 76
BmsI	GCATC	2 cut(s)	17, 141
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	17, 76
BseGI	GGATG	3 cut(s)	32, 156, 247
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	25, 167
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	2 cut(s)	204, 315
BseXI	GCAGC	2 cut(s)	294, 343
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	139, 317
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	24, 168
BspEI	TCCGGA	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	17, 76
Bst4CI	ACNGT	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	11, 110, 176
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	32, 156, 247
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	17, 76
BstNSI	RCATGY	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	15, 74
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	294, 343
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	32, 156, 247
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	3 cut(s)	184, 356, 464
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	11, 110, 176
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	15, 74
EcoRV	GATATC	1 cut(s)	450
FaeI	CATG	3 cut(s)	187, 359, 467
FaiI	YATR	8 cut(s)	39, 41, 116, 144, 185, 357, 398, 465
FatI	CATG	3 cut(s)	183, 355, 463
Fnu4HI	GCNGC	3 cut(s)	308, 332, 335
FokI	GGATG	3 cut(s)	39, 163, 254
Fsp4HI	GCNGC	3 cut(s)	308, 332, 335
FspBI	CTAG	3 cut(s)	197, 429, 435
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	308, 332, 335
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	139, 317
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	187, 359, 467
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	2 cut(s)	180, 320
HpaII	CCGG	2 cut(s)	139, 317
HphI	GGTGA	2 cut(s)	49, 457
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	177, 280, 346
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	6, 30, 47, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	3 cut(s)	11, 110, 176
Hsp92II	CATG	3 cut(s)	187, 359, 467
HspAI	GCGC	1 cut(s)	154
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	2 cut(s)	294, 343
LweI	GCATC	2 cut(s)	17, 141
MaeI	CTAG	3 cut(s)	197, 429, 435
MaeIII	GTNAC	2 cut(s)	55, 95
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	5 cut(s)	293, 402, 405, 408, 411
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	9 cut(s)	20, 26, 46, 115, 182, 185, 232, 293, 324
Mox20I	TGGCCA	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	79
Msp20I	TGGCCA	1 cut(s)	79
MspI	CCGG	2 cut(s)	139, 317
MspR9I	CCNGG	2 cut(s)	17, 76
MvaI	CCWGG	2 cut(s)	17, 76
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	187, 359, 467
NmuCI	GTSAC	2 cut(s)	55, 95
NsbI	TGCGCA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	309, 333, 336
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	15, 74
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	15, 74
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SatI	GCNGC	3 cut(s)	308, 332, 335
Sau3AI	GATC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	17, 76
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	12, 25, 57, 69, 77, 309, 316, 409, 491
SfaNI	GCATC	2 cut(s)	17, 141
SfcI	CTRYAG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	3 cut(s)	197, 429, 435
StyD4I	CCNGG	2 cut(s)	15, 74
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	320
TseFI	GTSAC	2 cut(s)	55, 95
TseI	GCWGC	2 cut(s)	307, 331
Tsp45I	GTSAC	2 cut(s)	55, 95
TspDTI	ATGAA	2 cut(s)	159, 305
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	3 cut(s)	197, 429, 435
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.