Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

7951072 .. 7954164

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11530.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCCTATCTAACGGCAAGAACAGGGCGGCAGAGGCAGCGCTACGACGGTCATTTGAGGCTTGTTTCGGGGTGTATTCCTTATAGGTTTGAAAAGAGTGATGGCAGTATAGAGCAAAAATTGCTTGTTCTCATGATTTCTTCTCCAAGTCGGGACGATCTTGTGTTTCCAAAGGGTGGATGGGAGGATGACGAAACCATGAGTGAAGCTGCCTGTCGCGAGGCCTTAGAGGAAGCCGGAGTGAAAGGAGTTCTTGGTGACAATCCACTGGGAGCTTGGGAGTTTAGAAGCAAGAGCAAACAGAAGAGCTGCAGTCTGCAAGGAGGTTGTAAAGGTTTCATGTTTGCAATGGAGGTGACTGAGGAACTCGATTCCTGGCCCGAGCAGGCTAACTATGGAAGGAAATGGCTCACAATAGAAGAAGCATTCAGATCCTGTCGTTATGACTGGATGCGAGAAGCGCTACGAAAATTTGCAACAGCTCTCTCGGAGACCAGGGAAAATGACACAGGGAAAGAGCTGGATGAACTTCCTTTGAGGCCAATCTCAGAAATTGGATCAGAACATCCAATGTCATCATCGTCAACGTCCTTTGCTAATCATCCCAGCATCCAGCAGCTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

210

Amino Acids

23.59

Weight (kDa)

5.27

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	2 cut(s)	426, 565
AcsI	RAATTY	1 cut(s)	470
AfeI	AGCGCT	2 cut(s)	41, 462
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	374, 494
AluBI	AGCT	7 cut(s)	209, 275, 309, 482, 520, 619, 626
AluI	AGCT	7 cut(s)	209, 275, 309, 482, 520, 619, 626
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	426, 565
AlwNI	CAGNNNCTG	1 cut(s)	435
Ama87I	CYCGRG	1 cut(s)	380
Aor51HI	AGCGCT	2 cut(s)	41, 462
AoxI	GGCC	3 cut(s)	222, 377, 539
ApeKI	GCWGC	5 cut(s)	37, 209, 309, 616, 623
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	42, 463
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	269, 367
AvaI	CYCGRG	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	49, 196, 296
BccI	CCATC	2 cut(s)	95, 174
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	376, 496
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	2 cut(s)	43, 464
BisI	GCNGC	6 cut(s)	29, 38, 210, 310, 617, 624
BlsI	GCNGC	6 cut(s)	30, 39, 211, 311, 618, 625
Bme1390I	CCNGG	2 cut(s)	376, 496
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	376, 496
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	441, 618
BmuI	ACTGGG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	273, 452
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	376, 496
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	7 cut(s)	185, 193, 456, 529, 565, 601, 609
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	351, 561
BseNI	ACTGG	2 cut(s)	273, 452
BseXI	GCAGC	3 cut(s)	49, 196, 296
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	224, 379, 541
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	224, 379, 541
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	157, 431, 557
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	224, 379, 541
BspCNI	CTCAG	2 cut(s)	352, 560
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	314
BspPI	GGATC	2 cut(s)	426, 565
BspQI	GCTCTTC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	273, 452
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	3 cut(s)	157, 431, 557
Bst2UI	CCWGG	2 cut(s)	376, 496
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	387, 621
BstDEI	CTNAG	3 cut(s)	226, 360, 547
BstF5I	GGATG	7 cut(s)	185, 193, 456, 529, 565, 601, 609
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	2 cut(s)	43, 464
BstHHI	GCGC	2 cut(s)	42, 463
BstKTI	GATC	3 cut(s)	160, 434, 560
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	3 cut(s)	157, 431, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 37, 121, 460
BstNI	CCWGG	2 cut(s)	376, 496
BstSCI	CCNGG	2 cut(s)	374, 494
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	49, 196, 296
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	224, 379, 541
BtsCI	GGATG	7 cut(s)	185, 193, 456, 529, 565, 601, 609
BtsIMutI	CAGTG	1 cut(s)	266
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	387, 621
CaiI	CAGNNNCTG	1 cut(s)	435
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	42, 463
Cfr13I	GGNCC	1 cut(s)	378
CviAII	CATG	3 cut(s)	133, 199, 340
DdeI	CTNAG	3 cut(s)	226, 360, 547
DpnI	GATC	3 cut(s)	159, 433, 559
DpnII	GATC	3 cut(s)	157, 431, 557
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	485
Eco47III	AGCGCT	2 cut(s)	41, 462
Eco88I	CYCGRG	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	374, 494
FaeI	CATG	3 cut(s)	136, 202, 343
FaiI	YATR	7 cut(s)	84, 110, 134, 200, 341, 396, 444
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	132, 198, 339
Fnu4HI	GCNGC	6 cut(s)	29, 38, 210, 310, 617, 624
FokI	GGATG	7 cut(s)	192, 200, 463, 536, 552, 588, 596
Fsp4HI	GCNGC	6 cut(s)	29, 38, 210, 310, 617, 624
GlaI	GCGC	2 cut(s)	41, 462
GluI	GCNGC	6 cut(s)	29, 38, 210, 310, 617, 624
GsaI	CCCAGC	1 cut(s)	609
HaeII	RGCGCY	2 cut(s)	43, 464
HaeIII	GGCC	3 cut(s)	224, 379, 541
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	42, 463
Hin1II	CATG	3 cut(s)	136, 202, 343
Hin6I	GCGC	2 cut(s)	40, 461
HinP1I	GCGC	2 cut(s)	40, 461
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	269, 367
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	4 cut(s)	431, 490, 550, 562
Hpy188III	TCNNGA	3 cut(s)	133, 152, 218
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	5 cut(s)	312, 319, 347, 476, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 37, 121, 460
HpyF3I	CTNAG	3 cut(s)	226, 360, 547
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	136, 202, 343
HspAI	GCGC	2 cut(s)	40, 461
Kzo9I	GATC	3 cut(s)	157, 431, 557
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	3 cut(s)	49, 196, 296
LweI	GCATC	2 cut(s)	441, 618
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	257, 355
MalI	GATC	3 cut(s)	159, 433, 559
MboI	GATC	3 cut(s)	157, 431, 557
MboII	GAAGA	3 cut(s)	132, 316, 431
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	3 cut(s)	119, 470, 552
MnlI	CCTC	9 cut(s)	27, 51, 178, 214, 223, 317, 346, 355, 531
MseI	TTAA	1 cut(s)	628
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	376, 496
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	376, 496
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	34, 37, 121, 460
NdeII	GATC	3 cut(s)	157, 431, 557
NlaIII	CATG	3 cut(s)	136, 202, 343
NmuCI	GTSAC	2 cut(s)	257, 355
NruI	TCGCGA	1 cut(s)	219
PagI	TCATGA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	299
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	30, 39, 211, 311, 618, 625
Psp6I	CCWGG	2 cut(s)	374, 494
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	374, 494
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	6 cut(s)	29, 38, 210, 310, 617, 624
Sau3AI	GATC	3 cut(s)	157, 431, 557
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	376, 496
SfaNI	GCATC	2 cut(s)	441, 618
SfcI	CTRYAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	119, 470, 552
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	374, 494
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	1 cut(s)	369
TasI	AATT	3 cut(s)	119, 470, 552
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	257, 355
TseI	GCWGC	5 cut(s)	37, 209, 309, 616, 623
Tsp45I	GTSAC	2 cut(s)	257, 355
TspDTI	ATGAA	2 cut(s)	328, 540
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	177, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.