Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

81739596 .. 81741816

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG649000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAAGCTGCTGCTTCTTCTGCTAATTTCCTCAAGATCCATTCGAAACAACTCCTAGAAAAAAGGTCGATCATCAATCCGATCATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCTAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCTTTCGAGGAATCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGATGGTACTGTGGTAAAAGCAGCTGTAGTACCAGCTGATGAAGTCGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGATGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCAGCCATGATCTCCATGCCAATGCCATTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

284

Amino Acids

32.4

Weight (kDa)

4.76

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	80 - 194	6.9e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	31, 204
AcoI	YGGCCR	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	3 cut(s)	634, 657, 713
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	420, 453
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	429, 488
AluBI	AGCT	6 cut(s)	8, 323, 338, 481, 650, 662
AluI	AGCT	6 cut(s)	8, 323, 338, 481, 650, 662
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	31, 204
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	249, 367
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	577
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BalI	TGGCCA	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 659
BccI	CCATC	2 cut(s)	288, 623
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	2 cut(s)	431, 490
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	56, 98
BfmI	CTRYAG	2 cut(s)	442, 651
BfuI	GTATCC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	431, 490
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	767
BmrFI	CCNGG	2 cut(s)	431, 490
BmsI	GCATC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	602
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	2 cut(s)	552, 811
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	800
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	431, 490
BseGI	GGATG	6 cut(s)	161, 299, 307, 570, 619, 833
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 659
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	169, 553, 812
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	577, 756
Bsp143I	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	3 cut(s)	681, 721, 851
BspMAI	CTGCAG	1 cut(s)	446
BspPI	GGATC	2 cut(s)	31, 204
BspQI	GCTCTTC	1 cut(s)	471
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	800
BsrFI	RCCGGY	2 cut(s)	552, 811
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	2 cut(s)	552, 811
BssMI	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
BssNI	GRCGYC	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	431, 490
Bst4CI	ACNGT	3 cut(s)	313, 509, 637
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	368, 590
BstF5I	GGATG	6 cut(s)	161, 299, 307, 570, 619, 833
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	9 cut(s)	39, 72, 84, 199, 676, 681, 721, 786, 851
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
BstNI	CCWGG	2 cut(s)	431, 490
BstNSI	RCATGY	2 cut(s)	424, 457
BstSCI	CCNGG	2 cut(s)	429, 488
BstSFI	CTRYAG	2 cut(s)	442, 651
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 659
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	6 cut(s)	161, 299, 307, 570, 619, 833
BtsIMutI	CAGTG	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	589
CciI	TCATGA	3 cut(s)	681, 721, 851
Cfr10I	RCCGGY	2 cut(s)	552, 811
Cfr13I	GGNCC	1 cut(s)	767
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	633, 656, 712
CviAII	CATG	9 cut(s)	85, 247, 421, 454, 682, 722, 781, 790, 852
CviQI	GTAC	3 cut(s)	633, 656, 712
DdeI	CTNAG	2 cut(s)	368, 590
DpnI	GATC	9 cut(s)	38, 71, 83, 198, 675, 680, 720, 785, 850
DpnII	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	429, 488
EcoT38I	GRGCYC	1 cut(s)	756
FaeI	CATG	9 cut(s)	88, 250, 424, 457, 685, 725, 784, 793, 855
FatI	CATG	9 cut(s)	84, 246, 420, 453, 681, 721, 780, 789, 851
FbaI	TGATCA	1 cut(s)	718
FokI	GGATG	6 cut(s)	168, 306, 314, 577, 626, 820
FriOI	GRGCYC	1 cut(s)	756
FspBI	CTAG	2 cut(s)	56, 98
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	3 cut(s)	169, 553, 812
HgaI	GACGC	1 cut(s)	591
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	9 cut(s)	88, 250, 424, 457, 685, 725, 784, 793, 855
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	347, 685
HpaII	CCGG	3 cut(s)	169, 553, 812
HphI	GGTGA	2 cut(s)	249, 367
Hpy188I	TCNGA	7 cut(s)	81, 401, 591, 607, 678, 690, 848
Hpy188III	TCNNGA	7 cut(s)	34, 153, 332, 682, 705, 722, 852
Hpy99I	CGWCG	2 cut(s)	272, 811
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	313, 509, 637
HpyCH4IV	ACGT	2 cut(s)	124, 843
HpyCH4V	TGCA	3 cut(s)	426, 444, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
HpyF3I	CTNAG	2 cut(s)	368, 590
HpySE526I	ACGT	2 cut(s)	124, 843
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	9 cut(s)	88, 250, 424, 457, 685, 725, 784, 793, 855
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	8 cut(s)	216, 219, 222, 310, 428, 438, 511, 659
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	56, 98
MaeII	ACGT	2 cut(s)	124, 843
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	9 cut(s)	38, 71, 83, 198, 675, 680, 720, 785, 850
MboI	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
MboII	GAAGA	4 cut(s)	9, 191, 246, 488
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	577, 756
MlsI	TGGCCA	1 cut(s)	493
MluCI	AATT	4 cut(s)	25, 136, 698, 747
MluNI	TGGCCA	1 cut(s)	493
Mox20I	TGGCCA	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	493
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	493
MspA1I	CMGCKG	2 cut(s)	650, 662
MspI	CCGG	3 cut(s)	169, 553, 812
MspR9I	CCNGG	2 cut(s)	431, 490
MvaI	CCWGG	2 cut(s)	431, 490
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	20, 210, 447, 499
NdeII	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
NlaIII	CATG	9 cut(s)	88, 250, 424, 457, 685, 725, 784, 793, 855
NspI	RCATGY	2 cut(s)	424, 457
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	3 cut(s)	681, 721, 851
PciI	ACATGT	2 cut(s)	420, 453
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	347, 685
PscI	ACATGT	2 cut(s)	420, 453
Psp1406I	AACGTT	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	429, 488
PspGI	CCWGG	2 cut(s)	429, 488
PspPI	GGNCC	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	650, 662
RsaI	GTAC	3 cut(s)	634, 657, 713
RsaNI	GTAC	3 cut(s)	633, 656, 712
RseI	CAYNNNNRTG	1 cut(s)	794
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	746
Sau3AI	GATC	9 cut(s)	36, 69, 81, 196, 673, 678, 718, 783, 848
Sau96I	GGNCC	1 cut(s)	767
ScrFI	CCNGG	2 cut(s)	431, 490
SduI	GDGCHC	2 cut(s)	577, 756
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	2 cut(s)	442, 651
SfuI	TTCGAA	1 cut(s)	44
SgrAI	CRCCGGYG	1 cut(s)	811
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	25, 136, 698, 747
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	56, 98
StyD4I	CCNGG	2 cut(s)	429, 488
TaaI	ACNGT	3 cut(s)	313, 509, 637
TaiI	ACGT	2 cut(s)	127, 846
TaqI	TCGA	4 cut(s)	44, 68, 342, 672
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	4 cut(s)	25, 136, 698, 747
TfiI	GAWTC	2 cut(s)	347, 685
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	1 cut(s)	582
TspDTI	ATGAA	4 cut(s)	17, 573, 681, 698
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	767
XceI	RCATGY	2 cut(s)	424, 457
XspI	CTAG	2 cut(s)	56, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.