Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

39726964 .. 39728816

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAATGATGAGGATCATAGCAGCAGCAGCCACATTGAAAACAAGATACAGGTTCTCATGGTTTCTTCACCTGACCGCGACGACCTAGTGTTTCCAAAAGGTGGGTGGGAGGATGATGAGACTGTTTTAGAAGCTGCTAGTCGTGAAGCCTTCGAGGAAGCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAAGATGTGCAGCCTGGAAGGAGGATGCAAAGGCTACATGTTTGCATTACAAGTAACCCAAGAGCTTGACACATGGCCAGAGCAGCAAAACCGTGCTAGAGAATGGCTAAGCACGAAGGATGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTTGAGCAGTTTCTGAGAGTTATGGCGTCGTCATCAGATACGAAAGATGATGATGGTGCTGTGGGAAATAATGCAGTTGTAGTACCAGCTGATGAAGTTGTAGTGGATCATGATCAGATTATGAATCAGATGACAGCAGACTTATTAGGAGAGACGTCTGATGATCATGAACATACAATAGGGGACTTAACTGAGGAGCCCGAACCGTGTAGTCCTCGTCCGGCCATGACCTCCACGCCGTCGACATTGTTGCGGTCGCCATTGTCATCCAGCAACGTCAGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

225

Amino Acids

25.13

Weight (kDa)

4.57

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	17 - 131	6.6e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	629
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	76, 640
AclWI	GGATC	2 cut(s)	21, 501
AcoI	YGGCCR	2 cut(s)	302, 609
AcyI	GRCGYC	2 cut(s)	413, 542
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	134, 292, 476
AluI	AGCT	3 cut(s)	134, 292, 476
Alw26I	GTCTC	2 cut(s)	113, 533
AlwI	GGATC	2 cut(s)	21, 501
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	302, 609
ApeKI	GCWGC	6 cut(s)	21, 24, 27, 134, 237, 310
AsuHPI	GGTGA	2 cut(s)	60, 178
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	588
BbvI	GCAGC	6 cut(s)	33, 36, 39, 121, 249, 322
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	610
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	2 cut(s)	499, 550
BcoDI	GTCTC	2 cut(s)	113, 533
BfaI	CTAG	3 cut(s)	86, 138, 324
BisI	GCNGC	6 cut(s)	22, 25, 28, 135, 238, 311
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	6 cut(s)	23, 26, 29, 136, 239, 312
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	3 cut(s)	242, 337, 366
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	410
BsaBI	GATNNNNATC	2 cut(s)	12, 498
BsaHI	GRCGYC	2 cut(s)	413, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	363
Bse8I	GATNNNNATC	2 cut(s)	12, 498
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	5 cut(s)	118, 257, 352, 381, 653
BseJI	GATNNNNATC	2 cut(s)	12, 498
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	392, 570
BseRI	GAGGAG	2 cut(s)	180, 596
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	6 cut(s)	33, 36, 39, 121, 249, 322
BsgI	GTGCAG	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	2 cut(s)	304, 611
BsiEI	CGRYCG	1 cut(s)	644
BsiSI	CCGG	2 cut(s)	364, 608
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	113, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	304, 611
Bsp1286I	GDGCHC	2 cut(s)	388, 588
Bsp143I	GATC	5 cut(s)	13, 493, 499, 550, 668
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	76, 640
BspANI	GGCC	2 cut(s)	304, 611
BspCNI	CTCAG	2 cut(s)	393, 571
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	496, 553
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	2 cut(s)	21, 501
BsrFI	RCCGGY	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	5 cut(s)	13, 493, 499, 550, 668
BssNI	GRCGYC	2 cut(s)	413, 542
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	124, 320, 594
BstACI	GRCGYC	2 cut(s)	413, 542
BstDEI	CTNAG	4 cut(s)	179, 335, 401, 579
BstF5I	GGATG	5 cut(s)	118, 257, 352, 381, 653
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	5 cut(s)	16, 496, 502, 553, 671
BstMAI	GTCTC	2 cut(s)	113, 533
BstMBI	GATC	5 cut(s)	13, 493, 499, 550, 668
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 310
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	6 cut(s)	33, 36, 39, 121, 249, 322
BsuRI	GGCC	2 cut(s)	304, 611
BtsCI	GGATG	5 cut(s)	118, 257, 352, 381, 653
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	2 cut(s)	496, 553
Cfr10I	RCCGGY	1 cut(s)	363
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	6 cut(s)	58, 265, 300, 497, 554, 613
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	179, 335, 401, 579
DpnI	GATC	5 cut(s)	15, 495, 501, 552, 670
DpnII	GATC	5 cut(s)	13, 493, 499, 550, 668
EaeI	YGGCCR	2 cut(s)	302, 609
Eco24I	GRGCYC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	6 cut(s)	61, 268, 303, 500, 557, 616
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	6 cut(s)	57, 264, 299, 496, 553, 612
FbaI	TGATCA	2 cut(s)	499, 550
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	6 cut(s)	22, 25, 28, 135, 238, 311
FokI	GGATG	5 cut(s)	125, 264, 359, 388, 640
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	6 cut(s)	22, 25, 28, 135, 238, 311
FspBI	CTAG	3 cut(s)	86, 138, 324
GluI	GCNGC	6 cut(s)	22, 25, 28, 135, 238, 311
HaeIII	GGCC	2 cut(s)	304, 611
HapII	CCGG	2 cut(s)	364, 608
HgaI	GACGC	1 cut(s)	402
Hin1I	GRCGYC	2 cut(s)	413, 542
Hin1II	CATG	6 cut(s)	61, 268, 303, 500, 557, 616
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	364, 608
HphI	GGTGA	2 cut(s)	60, 178
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	7 cut(s)	212, 402, 424, 504, 516, 547, 668
Hpy188III	TCNNGA	4 cut(s)	143, 497, 554, 672
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	3 cut(s)	83, 418, 631
HpyAV	CCTTC	3 cut(s)	160, 239, 337
HpyCH4III	ACNGT	3 cut(s)	124, 320, 594
HpyCH4IV	ACGT	2 cut(s)	542, 663
HpyCH4V	TGCA	5 cut(s)	237, 255, 272, 350, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 310
HpyF3I	CTNAG	4 cut(s)	179, 335, 401, 579
HpySE526I	ACGT	2 cut(s)	542, 663
Hsp92I	GRCGYC	2 cut(s)	413, 542
Hsp92II	CATG	6 cut(s)	61, 268, 303, 500, 557, 616
Ksp22I	TGATCA	2 cut(s)	499, 550
Kzo9I	GATC	5 cut(s)	13, 493, 499, 550, 668
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	6 cut(s)	33, 36, 39, 121, 249, 322
LweI	GCATC	3 cut(s)	242, 337, 366
MaeI	CTAG	3 cut(s)	86, 138, 324
MaeII	ACGT	2 cut(s)	542, 663
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	5 cut(s)	15, 495, 501, 552, 670
MboI	GATC	5 cut(s)	13, 493, 499, 550, 668
MboII	GAAGA	2 cut(s)	57, 241
MhlI	GDGCHC	2 cut(s)	388, 588
MlsI	TGGCCA	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	8 cut(s)	4, 103, 148, 201, 242, 574, 612, 628
Mox20I	TGGCCA	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	364, 608
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	27, 310
NdeII	GATC	5 cut(s)	13, 493, 499, 550, 668
NlaIII	CATG	6 cut(s)	61, 268, 303, 500, 557, 616
NlaIV	GGNNCC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	268
PagI	TCATGA	2 cut(s)	496, 553
PciI	ACATGT	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	23, 26, 29, 136, 239, 312
PscI	ACATGT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	6 cut(s)	22, 25, 28, 135, 238, 311
Sau3AI	GATC	5 cut(s)	13, 493, 499, 550, 668
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	388, 588
SfaNI	GCATC	3 cut(s)	242, 337, 366
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SsiI	CCGC	2 cut(s)	76, 640
SspMI	CTAG	3 cut(s)	86, 138, 324
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	124, 320, 594
TaiI	ACGT	2 cut(s)	545, 666
TaqI	TCGA	2 cut(s)	153, 629
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TseI	GCWGC	6 cut(s)	21, 24, 27, 134, 237, 310
TspDTI	ATGAA	5 cut(s)	17, 384, 495, 524, 570
Van91I	CCANNNNNTGG	1 cut(s)	101
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	3 cut(s)	86, 138, 324
ZraI	GACGTC	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.