Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

83276197 .. 83279845

Gene Structure 3649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATCGACGTACTACTTGAGAGCTATAAGATCAACTGCTTAATTGTTCTTGAGTTTCTTAATTACCTTGTTATATATGAAAGCTGCTGCTTCTTCTGCTTAATCTCCTCAAGATCTATTAGAAACAACCAAAGAAGGTCGATCATCAATCCGATCATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCCTTCGAGGAAGCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAAGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTTTGAGAGTTGTGGCGTCAGATAAGGACGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAAATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCGGCCATGATCTCCATGCCAATGCCATTGCCGTCGCGGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

308

Amino Acids

35.35

Weight (kDa)

4.71

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	102 - 216	2.9e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccII	CGCG	2 cut(s)	333, 880
AciI	CCGC	2 cut(s)	331, 880
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	2 cut(s)	557, 846
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	4 cut(s)	12, 697, 720, 785
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	2 cut(s)	486, 519
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	2 cut(s)	495, 554
AluBI	AGCT	6 cut(s)	24, 84, 389, 547, 713, 725
AluI	AGCT	6 cut(s)	24, 84, 389, 547, 713, 725
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	2 cut(s)	557, 846
ApeKI	GCWGC	8 cut(s)	84, 87, 276, 389, 492, 507, 565, 710
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	2 cut(s)	315, 433
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	8 cut(s)	71, 74, 288, 376, 494, 504, 577, 722
BccI	CCATC	2 cut(s)	354, 686
BceAI	ACGGC	1 cut(s)	859
BciT130I	CCWGG	2 cut(s)	497, 556
BciVI	GTATCC	1 cut(s)	242
BclI	TGATCA	2 cut(s)	745, 790
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	508, 714
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	8 cut(s)	85, 88, 277, 390, 493, 508, 566, 711
BlsI	GCNGC	8 cut(s)	86, 89, 278, 391, 494, 509, 567, 712
Bme1390I	CCNGG	2 cut(s)	497, 556
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	1 cut(s)	836
BmrFI	CCNGG	2 cut(s)	497, 556
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	3 cut(s)	38, 71, 94
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	668
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	869
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	497, 556
BseGI	GGATG	6 cut(s)	233, 365, 373, 636, 748, 902
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	869
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	2 cut(s)	97, 435
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	8 cut(s)	71, 74, 288, 376, 494, 504, 577, 722
BsgI	GTGCAG	1 cut(s)	511
Bsh1236I	CGCG	2 cut(s)	333, 880
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	559, 848
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	3 cut(s)	241, 619, 845
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	559, 848
Bsp1286I	GDGCHC	2 cut(s)	643, 825
BspACI	CCGC	2 cut(s)	331, 880
BspANI	GGCC	2 cut(s)	559, 848
BspFNI	CGCG	2 cut(s)	333, 880
BspHI	TCATGA	3 cut(s)	753, 793, 920
BspMAI	CTGCAG	1 cut(s)	512
BspPI	GGATC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	869
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	618
BssNI	GRCGYC	1 cut(s)	668
Bst2UI	CCWGG	2 cut(s)	497, 556
Bst4CI	ACNGT	3 cut(s)	379, 575, 700
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	668
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	6 cut(s)	233, 365, 373, 636, 748, 902
BstFNI	CGCG	2 cut(s)	333, 880
BstMAI	GTCTC	1 cut(s)	368
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 513, 565
BstNI	CCWGG	2 cut(s)	497, 556
BstNSI	RCATGY	2 cut(s)	490, 523
BstSCI	CCNGG	2 cut(s)	495, 554
BstSFI	CTRYAG	2 cut(s)	508, 714
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	2 cut(s)	333, 880
BstV1I	GCAGC	8 cut(s)	71, 74, 288, 376, 494, 504, 577, 722
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	559, 848
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	6 cut(s)	233, 365, 373, 636, 748, 902
BtsIMutI	CAGTG	1 cut(s)	641
CciI	TCATGA	3 cut(s)	753, 793, 920
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	836
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	11, 696, 719, 784
CviAII	CATG	9 cut(s)	157, 313, 487, 520, 754, 794, 850, 859, 921
CviQI	GTAC	4 cut(s)	11, 696, 719, 784
DdeI	CTNAG	1 cut(s)	434
EaeI	YGGCCR	2 cut(s)	557, 846
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	495, 554
EcoT38I	GRGCYC	1 cut(s)	825
FaeI	CATG	9 cut(s)	160, 316, 490, 523, 757, 797, 853, 862, 924
FatI	CATG	9 cut(s)	156, 312, 486, 519, 753, 793, 849, 858, 920
FauI	CCCGC	1 cut(s)	873
FbaI	TGATCA	2 cut(s)	745, 790
Fnu4HI	GCNGC	8 cut(s)	85, 88, 277, 390, 493, 508, 566, 711
FokI	GGATG	6 cut(s)	240, 372, 380, 643, 755, 889
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	8 cut(s)	85, 88, 277, 390, 493, 508, 566, 711
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	8 cut(s)	85, 88, 277, 390, 493, 508, 566, 711
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	559, 848
HapII	CCGG	3 cut(s)	241, 619, 845
HgaI	GACGC	1 cut(s)	657
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	9 cut(s)	160, 316, 490, 523, 757, 797, 853, 862, 924
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	3 cut(s)	241, 619, 845
HphI	GGTGA	2 cut(s)	315, 433
Hpy188I	TCNGA	5 cut(s)	153, 467, 673, 750, 917
Hpy188III	TCNNGA	8 cut(s)	50, 111, 225, 398, 754, 777, 794, 921
Hpy99I	CGWCG	3 cut(s)	11, 338, 880
HpyAV	CCTTC	3 cut(s)	129, 415, 494
HpyCH4III	ACNGT	3 cut(s)	379, 575, 700
HpyCH4IV	ACGT	3 cut(s)	9, 196, 912
HpyCH4V	TGCA	3 cut(s)	492, 510, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 513, 565
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	3 cut(s)	9, 196, 912
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	9 cut(s)	160, 316, 490, 523, 757, 797, 853, 862, 924
Ksp22I	TGATCA	2 cut(s)	745, 790
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	8 cut(s)	71, 74, 288, 376, 494, 504, 577, 722
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	3 cut(s)	9, 196, 912
MaeIII	GTNAC	1 cut(s)	535
MboII	GAAGA	4 cut(s)	85, 263, 312, 554
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	643, 825
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	5 cut(s)	42, 61, 208, 770, 816
MluNI	TGGCCA	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	4 cut(s)	41, 60, 101, 815
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	559
MspA1I	CMGCKG	2 cut(s)	713, 725
MspI	CCGG	3 cut(s)	241, 619, 845
MspR9I	CCNGG	2 cut(s)	497, 556
MvaI	CCWGG	2 cut(s)	497, 556
MvnI	CGCG	2 cut(s)	333, 880
MwoI	GCNNNNNNNGC	3 cut(s)	96, 513, 565
NlaIII	CATG	9 cut(s)	160, 316, 490, 523, 757, 797, 853, 862, 924
NspI	RCATGY	2 cut(s)	490, 523
PagI	TCATGA	3 cut(s)	753, 793, 920
PciI	ACATGT	2 cut(s)	486, 519
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	757
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	8 cut(s)	86, 89, 278, 391, 494, 509, 567, 712
PscI	ACATGT	2 cut(s)	486, 519
Psp1406I	AACGTT	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	495, 554
PspGI	CCWGG	2 cut(s)	495, 554
PspPI	GGNCC	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	2 cut(s)	713, 725
RsaI	GTAC	4 cut(s)	12, 697, 720, 785
RsaNI	GTAC	4 cut(s)	11, 696, 719, 784
RseI	CAYNNNNRTG	1 cut(s)	863
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	41, 60, 101, 815
SatI	GCNGC	8 cut(s)	85, 88, 277, 390, 493, 508, 566, 711
Sau96I	GGNCC	1 cut(s)	836
ScrFI	CCNGG	2 cut(s)	497, 556
SduI	GDGCHC	2 cut(s)	643, 825
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	508, 714
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	3 cut(s)	17, 50, 109
SmoI	CTYRAG	3 cut(s)	17, 50, 109
Sse9I	AATT	5 cut(s)	42, 61, 208, 770, 816
SsiI	CCGC	2 cut(s)	331, 880
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	495, 554
TaaI	ACNGT	3 cut(s)	379, 575, 700
TaiI	ACGT	3 cut(s)	12, 199, 915
TaqI	TCGA	3 cut(s)	6, 140, 408
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	42, 61, 208, 770, 816
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	4 cut(s)	41, 60, 101, 815
Tru9I	TTAA	4 cut(s)	41, 60, 101, 815
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	8 cut(s)	84, 87, 276, 389, 492, 507, 565, 710
TspDTI	ATGAA	4 cut(s)	93, 639, 744, 770
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	836
XceI	RCATGY	2 cut(s)	490, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.